mRNA_H-paniculata_contig62954.14066.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62954.14066.1
Unique NamemRNA_H-paniculata_contig62954.14066.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig62954.14066.1 vs. uniprot
Match: UPI001F033C1B (secreted RxLR effector protein 161-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F033C1B)

HSP 1 Score: 153 bits (387), Expect = 1.270e-43
Identity = 75/154 (48.70%), Postives = 107/154 (69.48%), Query Frame = 1
Query:    4 NDHGLEGFVDADWAEDVEGRKSTTGYVFKLSGGTISWCSRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGPGAHCRTKHIGVRWHGIREWIWEGILTLKYVQTGDQLADILTKGLSRVLFQKLRNLL 465
            ND  L G+ DADW  D+  R+STTGY+++++G T+SWCS++Q  VA S+TKAEY +   A +E V+LR+LL SI    +  T ++EDN+ AI LS+ P  H RTKHI V +H +R+ + E I+++KY  + + LADI TKG S+  FQK RN+L
Sbjct:   94 NDPILSGYTDADWGGDIVTRRSTTGYIYQINGNTMSWCSKRQGCVARSTTKAEYESLSTACQEGVWLRKLLDSISITQQEPTIIYEDNQGAIELSRNPKFHSRTKHIDVAYHYVRQKVHENIISVKYCSSENMLADIFTKGFSKDTFQKFRNML 247          
BLAST of mRNA_H-paniculata_contig62954.14066.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY)

HSP 1 Score: 152 bits (385), Expect = 2.410e-43
Identity = 80/152 (52.63%), Postives = 104/152 (68.42%), Query Frame = 1
Query:    4 NDHGLEGFVDADWAEDVEGRKSTTGYVFKLSGGTISWCSRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGPGAHCRTKHIGVRWHGIREWIWEGILTLKYVQTGDQLADILTKGLSRVLFQKLRN 459
            +D  + GF D+D+A DV+ RKSTTGYVF ++ G I+WCSR+QQ  + S+T+AEYVAA EA KE ++LR LL  I      +  L+ DN+SAI L K P  H RTKHI VR+H I+E    G + ++YV++ DQLADILTK L  V F KLR 
Sbjct:   97 SDEPVHGFSDSDYASDVDTRKSTTGYVFNMANGAITWCSRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKEKFQNGDIKIEYVRSEDQLADILTKPLVSVKFNKLRT 248          
BLAST of mRNA_H-paniculata_contig62954.14066.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 157 bits (398), Expect = 1.090e-41
Identity = 76/145 (52.41%), Postives = 100/145 (68.97%), Query Frame = 1
Query:   16 LEGFVDADWAEDVEGRKSTTGYVFKLSGGTISWCSRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGPGAHCRTKHIGVRWHGIREWIWEGILTLKYVQTGDQLADILTKGLSRVLFQK 450
            L G+VDADWA DV  R+S +GY F L+GG +SW S+KQ   A SST+AEY+AA  A KE  +LR  LG IG  C+ +T L  DN+SA+ +++ P  H RTKHI VR+H +RE +  G + L+YV TGDQ+AD+LTKGL +    K
Sbjct:  983 LTGYVDADWAGDVNDRRSISGYTFLLAGGAVSWSSKKQNTTALSSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAKHDK 1127          
BLAST of mRNA_H-paniculata_contig62954.14066.1 vs. uniprot
Match: A0A6H5I0U2_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I0U2_9HYME)

HSP 1 Score: 147 bits (370), Expect = 1.400e-41
Identity = 72/144 (50.00%), Postives = 98/144 (68.06%), Query Frame = 1
Query:    4 NDHGLEGFVDADWAEDVEGRKSTTGYVFKLSGGTISWCSRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGPGAHCRTKHIGVRWHGIREWIWEGILTLKYVQTGDQLADILTKGLSR 435
            ++ GL+GF DADW  D+  RKS +GYVF LS G ISWCS+KQ+ VA SST+AEY++  +A KE +YL  LL  +GF     T ++ DN+SA  L+  P  H R+KHI +R H +RE + +G  TL+Y+ T D +ADILTK L +
Sbjct:   53 DEKGLKGFADADWGSDITDRKSYSGYVFSLSNGAISWCSKKQKSVALSSTEAEYMSLSDAAKEAIYLSGLLTELGFTDLSRTIIYNDNQSAGKLATNPVFHARSKHIDIRAHFVREALKDGKFTLEYLPTEDMIADILTKALPK 196          
BLAST of mRNA_H-paniculata_contig62954.14066.1 vs. uniprot
Match: A0A4Z0A7X3_9AGAM (Uncharacterized protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Z0A7X3_9AGAM)

HSP 1 Score: 146 bits (368), Expect = 5.200e-41
Identity = 73/145 (50.34%), Postives = 96/145 (66.21%), Query Frame = 1
Query:   16 LEGFVDADWAEDVEGRKSTTGYVFKLSGGTISWCSRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGPGAHCRTKHIGVRWHGIREWIWEGILTLKYVQTGDQLADILTKGLSRVLFQK 450
            L G+VDADWA DV  R S +GY F L+GG ISW S+KQ + A SST+AEY+AA  A KE  +L   L  IG  C+ +T L  DN+SA+ ++  P  H +TKHI VR+H +RE +  G + L+YV  GDQ+AD+LTKGL +    K
Sbjct:   79 LTGYVDADWAGDVNDRHSISGYTFLLAGGAISWSSKKQNMTALSSTEAEYIAAAHAAKEATWLCTFLSEIGRPCKAATLLLMDNQSAMAIAWNPVFHVQTKHIDVRYHFLREKVEAGAINLQYVPMGDQVADVLTKGLVKAKHDK 223          
BLAST of mRNA_H-paniculata_contig62954.14066.1 vs. uniprot
Match: A0A4Y9ZSL8_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZSL8_9AGAM)

HSP 1 Score: 149 bits (375), Expect = 5.530e-41
Identity = 73/145 (50.34%), Postives = 96/145 (66.21%), Query Frame = 1
Query:   16 LEGFVDADWAEDVEGRKSTTGYVFKLSGGTISWCSRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGPGAHCRTKHIGVRWHGIREWIWEGILTLKYVQTGDQLADILTKGLSRVLFQK 450
            L G+VDADWA DV  R+S +GY F L+GG ISW S+KQ   A SST+AEY+ A  A KE  +LR  L  IG  C+ +T L  DN+SA+ ++  P  H RTKHI +R+H +RE +  G + L+YV TGDQ+AD+L KGL +    K
Sbjct:  177 LTGYVDADWAGDVNDRRSISGYTFLLAGGAISWSSKKQNTTALSSTEAEYIVATHAAKEATWLRTFLSKIGRPCKAATLLLMDNQSAMAIAWNPAFHARTKHIDMRYHFLREKVEAGAINLQYVPTGDQVADVLMKGLVKAKHNK 321          
BLAST of mRNA_H-paniculata_contig62954.14066.1 vs. uniprot
Match: UPI001F04687D (secreted RxLR effector protein 161-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04687D)

HSP 1 Score: 145 bits (365), Expect = 9.170e-41
Identity = 75/150 (50.00%), Postives = 104/150 (69.33%), Query Frame = 1
Query:   16 LEGFVDADWAEDVEGRKSTTGYVFKLSGGTISWCSRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGPGAHCRTKHIGVRWHGIREWIWEGILTLKYVQTGDQLADILTKGLSRVLFQKLRNLL 465
            L G+ DAD+A +++ R+ST+GYVFKL+  TISW S+KQ  VA S+T+AEYVA  +A +E ++LR LL  +G      TT+ EDN+ AI +++ P  H RTKHI V +H +RE I    + + Y  + D +ADI+TKGLS+  FQKLRNLL
Sbjct:   63 LHGYSDADYAGNLDDRRSTSGYVFKLANSTISWSSKKQSTVARSTTEAEYVALSQATQEVIWLRRLLSDLGSKPVSPTTVHEDNQGAIEIARNPKFHNRTKHIDVAYHFVRERILSKEVKVCYCPSKDMIADIMTKGLSKDQFQKLRNLL 212          
BLAST of mRNA_H-paniculata_contig62954.14066.1 vs. uniprot
Match: UPI001AE8F203 (secreted RxLR effector protein 161-like n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI001AE8F203)

HSP 1 Score: 146 bits (368), Expect = 1.050e-40
Identity = 77/154 (50.00%), Postives = 103/154 (66.88%), Query Frame = 1
Query:    1 SNDHGLEGFVDADWAEDVEGRKSTTGYVFKLSGGTISWCSRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGPGAHCRTKHIGVRWHGIREWIWEGILTLKYVQTGDQLADILTKGLSRVLFQKLRNL 462
            SN   L GF D+DWA D + RKST+GY+F  + G ISW S+KQ+ VA S+ KAEY+A   A +E +++R LL +I   C   T +FEDN+S I+L+K P  H R KHI +R+H  RE +    +TL Y Q+ D +AD+LTKGLS+V F KL NL
Sbjct:   97 SNKGELVGFSDSDWAGDHDDRKSTSGYIFLYNEGPISWKSQKQRSVALSTVKAEYMALSAASQECIWIRNLLCNIERSCDSPTVIFEDNQSTISLTKNPQYHGRAKHIDIRYHFTRELVEANKITLVYCQSEDMVADMLTKGLSKVKFVKLLNL 250          
BLAST of mRNA_H-paniculata_contig62954.14066.1 vs. uniprot
Match: A0A1X7SFX4_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SFX4_AMPQE)

HSP 1 Score: 144 bits (363), Expect = 1.070e-40
Identity = 70/154 (45.45%), Postives = 103/154 (66.88%), Query Frame = 1
Query:    1 SNDHGLEGFVDADWAEDVEGRKSTTGYVFKLSGGTISWCSRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGPGAHCRTKHIGVRWHGIREWIWEGILTLKYVQTGDQLADILTKGLSRVLFQKLRNL 462
            S D  L G+ DADW  DV+  +STTGY+F++ G  +SW S++Q  VA S+ +AEY+A     +E V++REL   +     G TT+FEDN+SAI+++K P  H R KHIG+++H IRE +    + +KY +T D +ADI TKGL+   F++LR+L
Sbjct:   23 SEDTSLVGYSDADWGGDVDNYRSTTGYIFQIGGVAVSWKSKRQDCVALSTAEAEYMALASTAQEAVWMRELNADMNNKPNGPTTIFEDNQSAISMAKNPQFHGRAKHIGIKYHFIREQVSTESVQIKYCRTEDMVADIFTKGLTHEKFERLRSL 176          
BLAST of mRNA_H-paniculata_contig62954.14066.1 vs. uniprot
Match: H3G5T8_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5T8_PHYRM)

HSP 1 Score: 143 bits (361), Expect = 1.160e-40
Identity = 71/150 (47.33%), Postives = 103/150 (68.67%), Query Frame = 1
Query:   13 GLEGFVDADWAEDVEGRKSTTGYVFKLSGGTISWCSRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIG-FGCRGSTTLFEDNKSAINLSKGPGAHCRTKHIGVRWHGIREWIWEGILTLKYVQTGDQLADILTKGLSRVLFQKLRN 459
            GL+G+ DADWA D+E R+ST+GY F ++GG ISW S+KQ+ VA SST+AEY+A  EA +E V+L+  L  +G      +  ++EDN+ +I L+K P  H RTKHI +R+H +RE + +G + L+YV T D LAD++TK +    F  LR+
Sbjct:   24 GLQGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAIPATQFHVLRS 173          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62954.14066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F033C1B1.270e-4348.70secreted RxLR effector protein 161-like n=1 Tax=Xe... [more]
A0A1Y1N3K4_PHOPY2.410e-4352.63Uncharacterized protein n=2 Tax=Photinus pyralis T... [more]
A0A4Y9ZY34_9AGAM1.090e-4152.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5I0U2_9HYME1.400e-4150.00Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A4Z0A7X3_9AGAM5.200e-4150.34Uncharacterized protein n=1 Tax=Hericium alpestre ... [more]
A0A4Y9ZSL8_9AGAM5.530e-4150.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001F04687D9.170e-4150.00secreted RxLR effector protein 161-like n=1 Tax=Xe... [more]
UPI001AE8F2031.050e-4050.00secreted RxLR effector protein 161-like n=1 Tax=Le... [more]
A0A1X7SFX4_AMPQE1.070e-4045.45Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
H3G5T8_PHYRM1.160e-4047.33Uncharacterized protein n=5 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62954contigH-paniculata_contig62954:405..875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.4
Seed ortholog evalue1.4e-33
Seed eggNOG ortholog67593.Physo127720
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size471
Cds size471
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930720.8986013-CDS-H-paniculata_contig62954:404..8751622930720.8986013-CDS-H-paniculata_contig62954:404..875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62954 405..875 -
1691481422.1001296-CDS-H-paniculata_contig62954:404..8751691481422.1001296-CDS-H-paniculata_contig62954:404..875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62954 405..875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62954.14066.1prot_H-paniculata_contig62954.14066.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62954 405..875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62954.14066.1

>prot_H-paniculata_contig62954.14066.1 ID=prot_H-paniculata_contig62954.14066.1|Name=mRNA_H-paniculata_contig62954.14066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
SNDHGLEGFVDADWAEDVEGRKSTTGYVFKLSGGTISWCSRKQQLVAWSS
TKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGPG
AHCRTKHIGVRWHGIREWIWEGILTLKYVQTGDQLADILTKGLSRVLFQK
LRNLLM*
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mRNA from alignment at H-paniculata_contig62954:405..875-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62954.14066.1 ID=mRNA_H-paniculata_contig62954.14066.1|Name=mRNA_H-paniculata_contig62954.14066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=471bp|location=Sequence derived from alignment at H-paniculata_contig62954:405..875- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTAATGATCACGGTCTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGA TGTCGAGGGCCGAAAGTCCACAACAGGATACGTTTTCAAGCTGAGCGGTG GTACCATAAGTTGGTGCTCTAGGAAGCAACAGTTAGTCGCGTGGTCCAGT ACAAAGGCAGAGTACGTTGCTGCAGGAGAAGCGCGAAAGGAGACGGTATA TCTTAGGGAGTTACTAGGATCGATAGGTTTCGGATGCAGGGGGAGCACGA CATTGTTTGAGGACAATAAATCAGCTATTAATCTCAGTAAGGGACCAGGC GCACACTGCAGGACAAAGCACATCGGAGTGCGCTGGCACGGAATTCGAGA GTGGATTTGGGAAGGAATATTGACATTGAAATACGTGCAGACCGGCGATC AACTTGCTGACATTTTAACGAAAGGACTAAGCAGAGTACTGTTTCAGAAA CTTAGAAATTTACTCATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig62954:405..875-

>mRNA_H-paniculata_contig62954.14066.1 ID=mRNA_H-paniculata_contig62954.14066.1|Name=mRNA_H-paniculata_contig62954.14066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig62954:405..875- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTAATGATCACGGTCTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGA
TGTCGAGGGCCGAAAGTCCACAACAGGATACGTTTTCAAGCTGAGCGGTG
GTACCATAAGTTGGTGCTCTAGGAAGCAACAGTTAGTCGCGTGGTCCAGT
ACAAAGGCAGAGTACGTTGCTGCAGGAGAAGCGCGAAAGGAGACGGTATA
TCTTAGGGAGTTACTAGGATCGATAGGTTTCGGATGCAGGGGGAGCACGA
CATTGTTTGAGGACAATAAATCAGCTATTAATCTCAGTAAGGGACCAGGC
GCACACTGCAGGACAAAGCACATCGGAGTGCGCTGGCACGGAATTCGAGA
GTGGATTTGGGAAGGAATATTGACATTGAAATACGTGCAGACCGGCGATC
AACTTGCTGACATTTTAACGAAAGGACTAAGCAGAGTACTGTTTCAGAAA
CTTAGAAATTTACTCATGTGAAGTAATGATCACGGTCTGGAAGGATTCGT
TGATGCCGATTGGGCGGAAGATGTCGAGGGCCGAAAGTCCACAACAGGAT
ACGTTTTCAAGCTGAGCGGTGGTACCATAAGTTGGTGCTCTAGGAAGCAA
CAGTTAGTCGCGTGGTCCAGTACAAAGGCAGAGTACGTTGCTGCAGGAGA
AGCGCGAAAGGAGACGGTATATCTTAGGGAGTTACTAGGATCGATAGGTT
TCGGATGCAGGGGGAGCACGACATTGTTTGAGGACAATAAATCAGCTATT
AATCTCAGTAAGGGACCAGGCGCACACTGCAGGACAAAGCACATCGGAGT
GCGCTGGCACGGAATTCGAGAGTGGATTTGGGAAGGAATATTGACATTGA
AATACGTGCAGACCGGCGATCAACTTGCTGACATTTTAACGAAAGGACTA
AGCAGAGTACTGTTTCAGAAACTTAGAAATTTACTCATGTGA
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