mRNA_H-paniculata_contig62936.14063.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: A0A6B7EUY5_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EUY5_9PHAE) HSP 1 Score: 118 bits (296), Expect = 1.810e-33 Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 1
Query: 10 MTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSYF 228
MTFFSLFSILLNILLI IILIRSPNEQSLQENL PFKLFESSRRAETSIDKL+QILT+LYF +AICYVI SYF
Sbjct: 1 MTFFSLFSILLNILLILIILIRSPNEQSLQENLIPFKLFESSRRAETSIDKLLQILTILYFTIAICYVIGSYF 73
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: D1J765_ECTSI (Uncharacterized protein ycf47 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J765_ECTSI) HSP 1 Score: 108 bits (269), Expect = 2.590e-29 Identity = 60/75 (80.00%), Postives = 65/75 (86.67%), Query Frame = 1
Query: 4 NCMTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSYF 228
N T FS+ SILLNILLISIILIRSPNEQSLQENL PFK FESS RAE SIDKLIQILT+ YFI+A+ Y+IQSYF
Sbjct: 2 NYTTIFSIISILLNILLISIILIRSPNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTIFYFIIALIYIIQSYF 76
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: A0A5A4MI59_9PHAE (Uncharacterized protein n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MI59_9PHAE) HSP 1 Score: 105 bits (262), Expect = 3.020e-28 Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query: 4 NCMTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSYF 228
N MT F + SILLNILLI +IL+RSPNEQSLQENL PFKLFESS RAE SIDK IQ+LTVLYF++A+ YVIQSYF
Sbjct: 2 NYMTIFGVLSILLNILLILVILVRSPNEQSLQENLAPFKLFESSSRAEKSIDKFIQLLTVLYFLLALIYVIQSYF 76
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: A0A344PF79_9PHAE (Uncharacterized protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PF79_9PHAE) HSP 1 Score: 102 bits (253), Expect = 7.120e-27 Identity = 56/75 (74.67%), Postives = 65/75 (86.67%), Query Frame = 1
Query: 4 NCMTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSYF 228
N MT F + SI+LNILLI IILIRSPNEQSLQENL PF+LFESS RAE SIDK+IQ+LT+ YF++A+ YVIQSYF
Sbjct: 2 NSMTLFGILSIMLNILLILIILIRSPNEQSLQENLAPFRLFESSSRAEKSIDKVIQLLTIGYFLLALLYVIQSYF 76
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: A0A0R6LUQ0_UNDPI (Probable protein-export membrane protein SecG n=23 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUQ0_UNDPI) HSP 1 Score: 96.3 bits (238), Expect = 1.380e-24 Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 1
Query: 19 FSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSYF 228
FS+ SI+LN L+ IIL+RSPNEQSLQENL PFKLFESS RAE SIDKLIQILT+LYF++A+ Y IQ YF
Sbjct: 7 FSILSIILNFSLVLIILVRSPNEQSLQENLDPFKLFESSSRAEKSIDKLIQILTILYFVLALVYTIQRYF 76
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: A0A8F0F7T2_9PHAE (Probable protein-export membrane protein SecG n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7T2_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 2.780e-24 Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query: 4 NCMTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSYF 228
N FSL SI NILLI +IL+RSPNEQSLQENL P KLFESS +AE SIDKLIQIL + YF++A+CY IQSYF
Sbjct: 2 NYKDIFSLLSITSNILLILVILVRSPNEQSLQENLDPLKLFESSSKAEKSIDKLIQILAIFYFVLALCYNIQSYF 76
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: A0A141BSB1_9PHAE (Probable protein-export membrane protein SecG n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSB1_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 1.000e-21 Identity = 47/72 (65.28%), Postives = 60/72 (83.33%), Query Frame = 1
Query: 10 MTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSY 225
M FFS+ SI++N L+ IILIRSPNEQSLQENL PFK+FESS +AE SID LI+ILT++YF +A+ Y I++Y
Sbjct: 1 MKFFSIISIIVNFFLVLIILIRSPNEQSLQENLDPFKIFESSSKAENSIDNLIKILTIIYFSIALAYNIKNY 72
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: A0A2R4QPS9_9PHAE (Hypothetical chloroplast protein ycf47 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPS9_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 6.260e-21 Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query: 4 NCMTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSYF 228
C F S+ SI +NI+LI IILIRSPNEQSLQENL PFK FESS +AE ID LIQIL VLYF +A+ Y I++YF
Sbjct: 2 TCTKFLSIISIGINIILIFIILIRSPNEQSLQENLDPFKFFESSSKAEIFIDNLIQILVVLYFSLALLYNIKNYF 76
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: A0A8F0F9M4_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9M4_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 5.140e-20 Identity = 46/73 (63.01%), Postives = 57/73 (78.08%), Query Frame = 1
Query: 10 MTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSYF 228
M F + + +LNI+LI +IL+RSPNEQSLQENL PF LFESS RAE SID+LI+ LT +YF +A+ Y IQ YF
Sbjct: 4 MNIFGILTTILNIVLILVILVRSPNEQSLQENLDPFNLFESSSRAEKSIDRLIKRLTFMYFFLALFYAIQGYF 76
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Match: A0A8F0FBW8_9PHAE (Uncharacterized protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FBW8_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 4.210e-19 Identity = 46/75 (61.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query: 4 NCMTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDKLIQILTVLYFIVAICYVIQSYF 228
N M F + SI+LNI +IRSPNEQSLQENL PF+LFESS +AE SIDK I++LT LYFI+ I Y +Q YF
Sbjct: 2 NFMNVFGIISIVLNIXXXXXXIIRSPNEQSLQENLAPFQLFESSTKAEESIDKFIRLLTALYFILGIFYSLQKYF 76 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62936.14063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig62936.14063.1 >prot_H-paniculata_contig62936.14063.1 ID=prot_H-paniculata_contig62936.14063.1|Name=mRNA_H-paniculata_contig62936.14063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp MTFFSLFSILLNILLISIILIRSPNEQSLQENLTPFKLFESSRRAETSIDback to top mRNA from alignment at H-paniculata_contig62936:521..751- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig62936.14063.1 ID=mRNA_H-paniculata_contig62936.14063.1|Name=mRNA_H-paniculata_contig62936.14063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig62936:521..751- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig62936:521..751- >mRNA_H-paniculata_contig62936.14063.1 ID=mRNA_H-paniculata_contig62936.14063.1|Name=mRNA_H-paniculata_contig62936.14063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig62936:521..751- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |