mRNA_H-paniculata_contig6293.14061.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6293.14061.1
Unique NamemRNA_H-paniculata_contig6293.14061.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6293.14061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6293contigH-paniculata_contig6293:8878..10808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size268
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930720.5401049-CDS-H-paniculata_contig6293:8877..90541622930720.5401049-CDS-H-paniculata_contig6293:8877..9054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6293 8878..9054 +
1691481421.9836326-CDS-H-paniculata_contig6293:8877..90541691481421.9836326-CDS-H-paniculata_contig6293:8877..9054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6293 8878..9054 +
1622930720.5668778-CDS-H-paniculata_contig6293:10717..108071622930720.5668778-CDS-H-paniculata_contig6293:10717..10807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6293 10718..10807 +
1691481421.9945705-CDS-H-paniculata_contig6293:10717..108071691481421.9945705-CDS-H-paniculata_contig6293:10717..10807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6293 10718..10807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6293.14061.1prot_H-paniculata_contig6293.14061.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6293 8878..10807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6293.14061.1

>prot_H-paniculata_contig6293.14061.1 ID=prot_H-paniculata_contig6293.14061.1|Name=mRNA_H-paniculata_contig6293.14061.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
NKQKQQLHQQQRGTRLLKMFRNVGSKKIPRHGEVKQRRSRVAHPGPGRNN
RRKWSISTGTCVLLCAVVMSVYYLGLVLSPGAETGVPSA
back to top

mRNA from alignment at H-paniculata_contig6293:8878..10808+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6293.14061.1 ID=mRNA_H-paniculata_contig6293.14061.1|Name=mRNA_H-paniculata_contig6293.14061.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1931bp|location=Sequence derived from alignment at H-paniculata_contig6293:8878..10808+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAAACAGAAGCAGCAGCTGCATCAGCAGCAACGGGGTACTCGTTTGCT
GAAAATGTTCCGCAACGTGGGAAGTAAGAAGATTCCTAGGCACGGCGAGG
TGAAGCAACGGCGCTCGCGGGTGGCTCACCCTGGACCGGGACGCAATAAC
CGGAGAAAATGGTCAATTTCTACTGGGGTAAGAAAATCGGAAGCTACCAC
CTCCCTAATGTTACTGGATTGCTCTCTGCATAGGCTGACGGGACTGAATA
GCAACATCTGTTGTTCTAGCATGCGTACGATTTTGGCTTCTACAAACACA
CCCCGGCGGTGATAGTAGGGGGGGAATGTAGGTTTGTAGCACGTCGTTGG
AGGGCAGGCAGATAGCAGACAGCATGCCCTTCCTTGTTGAGGTAGAGAGC
AGAGTACCGATCATAATATAACGGAGGGAAAGGGCACGATGGCAACGTTT
GCCGCCGACAGTACATACACAGTAAGGCAGTTATCCATGTTGCTTTACCG
GTGTCGAGAGGTGATACAACAGAGTGTGATGACTGAACTCTCCAAGATCT
TGACATTCGTTTTTTCGATCGCCGGTCTGAAGATTGGTGTGTAGGTGAAT
AGACAGAAACGGTCCGCAGGGAAGATAAAATCACTCCTCACAGCATACAG
AATATCTGTGCTACAGTCCCCGCCGCAAGGTATGACAACTTTCAGGTCGT
GGATGCAGACTATCTGTCGGTAAGCTAAGTATTGGGTTTGTGACCGATTC
TCACTTGTGAACCCAACCGTAAAATGCATCATTTGAAATCTATCTACAAC
GATGTCAGAAAAAATCCATTTTTTACCCTTTGCCGTCGTGTTTTCCCGGG
AGAGCGGGATACCGGGCTTTCTGCCACCTCTGAATGACTTCCTCTAGGTA
GTAAGGAGAATCCGACATAATTTTTTTTCCGTTTTCGAGGTATATAGTTT
GACTTTGGGTCGAATTTGGGATTTCTCGGACAAAAACCTCTGAGTCTGGA
AAATTGGGCATGTTATCTAATTATACGTCCCGAGTTCGACCCAAAGCCAA
ACTACACGCCTCCGGAAACGGAAAAGAAGCGTGCCAGATTCTTCTTAATC
CCCGGAGAAAGCCCTTCCGAGGTGGCAGAAGCAGGGTATCCCAACCTCCG
GGGAAAACACGCCGGCTTAAGGCAATGTAGTGATTTTTTACCGACCGATG
TTTTTTCCAACACCATAAGACCACTTCTTATCCAACGAAACATGGCAACA
GAAAAAAGCTTGTCAGTTTTACTTGAAATTTGAGGTCAGCTGCATAATAG
CAACATGGGTATGATGGAGTTATTGGATAAGCGTTAAAGCTTAGTTATAC
TCACTGTGGTGTCCCCTAGCTCCCCCCCCCCCTCTACGTCCTCGCGGTGT
TTTGGTTTTTCTGATATATTATTAGCCAACCAGAAAGGAATCACAACGTG
AACTCTTAACACATGAACGAGGATCACTGATCCAACACGTGTTCAAGATA
CACGCCTACGCCTTGCGACAGGACACAAGTGAAAAAACAATCGAAGGACA
ACAGATGAAAACGCCCGCAATGTGTGTGTGTGTGTGTGTGTGTATGTGTA
TGACCTGAAAATATTTTGATGGCTGGATGAAAAAATAAGAAAAAGGCTAA
CTTTTGCTTGAAACGGCCGCACGAATCGTTTGTCAAACGTGAACTTATAT
TTTAGTCTCTTCAGTAGTTATTGTTATTCTTACAGCAATCGTATATTACG
TCCCGCTCCCCCCCCTATGCCCCCCTCACTGTCCCCCTCCCGAATGTCCT
CTTCTCTGGCCTCAAATCCATACACGACCATGTACACAAGACATGCGTCT
TGCTATGTGCCGTTGTCATGTCGGTGTATTACTTGGGTCTAGTATTGTCG
CCCGGCGCCGAGACAGGAGTTCCATCCGCAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6293:8878..10808+

>mRNA_H-paniculata_contig6293.14061.1 ID=mRNA_H-paniculata_contig6293.14061.1|Name=mRNA_H-paniculata_contig6293.14061.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig6293:8878..10808+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAAACAGAAGCAGCAGCTGCATCAGCAGCAACGGGGTACTCGTTTGCT
GAAAATGTTCCGCAACGTGGGAAGTAAGAAGATTCCTAGGCACGGCGAGG
TGAAGCAACGGCGCTCGCGGGTGGCTCACCCTGGACCGGGACGCAATAAC
CGGAGAAAATGGTCAATTTCTACTGGGAACAAACAGAAGCAGCAGCTGCA
TCAGCAGCAACGGGGTACTCGTTTGCTGAAAATGTTCCGCAACGTGGGAA
GTAAGAAGATTCCTAGGCACGGCGAGGTGAAGCAACGGCGCTCGCGGGTG
GCTCACCCTGGACCGGGACGCAATAACCGGAGAAAATGGTCAATTTCTAC
TGGGACATGCGTCTTGCTATGTGCCGTTGTCATGTCGGTGTATTACTTGG
GTCTAGTATTGTCGCCCGGCGCCGAGACAGGAGTTCCATCCGCAACATGC
GTCTTGCTATGTGCCGTTGTCATGTCGGTGTATTACTTGGGTCTAGTATT
GTCGCCCGGCGCCGAGACAGGAGTTCCATCCGCA
back to top