mRNA_H-paniculata_contig6292.14059.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6292.14059.1
Unique NamemRNA_H-paniculata_contig6292.14059.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6292.14059.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 335 bits (860), Expect = 7.170e-107
Identity = 166/260 (63.85%), Postives = 194/260 (74.62%), Query Frame = 2
Query:  185 GVLSAASALKVVTPTDDLTVIADSTYTVEWENTEKDHRYEIDLYYCNSYCTEGDCGEWVTALCPYGENGCPDNDGDYDVVMPEPMTGT-GSGKQGRYKVRVADVDEESNMDCSPPFYLLPSDEAPVAGDVDGPYLKVTSPTNGDMAMAGDEYTVEFDYNNGLGSKINRFKIDLYKKGGSGDCGTWVTSICDKPAIGCKDSMGDYDVSIPEDTPVGQYAIRVGVFEDDTVFGCSGTFEVEP---SNVDAGYGAPHSMSYMF 952
            G+L AA+ALKV TP+  LTVIAD TYTVEW  T  D+R+EIDLYYC S C E DCG+WVTALCPYGE+GCPDN+GDYD+VMPEPM GT GSG    YKVRV D+ +E + DCS  FYLL S EAP  GD DGP L+VTSP +GD+A    EYTVEFDY+NG+GS ++RF IDLY+  G GDCGT+V SICDKP IGCKDSMGDYDV IP DT  G+Y IRV  FEDD+++ CSGTF +E    S+         S+SY F
Sbjct:   12 GMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSG----YKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDSDXXXXXEDAFSLSYRF 267          
BLAST of mRNA_H-paniculata_contig6292.14059.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 330 bits (845), Expect = 1.620e-104
Identity = 157/236 (66.53%), Postives = 185/236 (78.39%), Query Frame = 2
Query:  191 LSAASALKVVTPTDDLTVIADSTYTVEWENTEKDHRYEIDLYYCNSYCTEGDCGEWVTALCPYGENGCPDNDGDYDVVMPEPMTGT-GSGKQGRYKVRVADVDEESNMDCSPPFYLLPSDEAPVAGDVDGPYLKVTSPTNGDMAMAGDEYTVEFDYNNGLGSKINRFKIDLYKKGGSGDCGTWVTSICDKPAIGCKDSMGDYDVSIPEDTPVGQYAIRVGVFEDDTVFGCSGTFEV 895
            L AASAL+VVTP +   V+A   YTVEW  T  ++RYEIDLYYC S C E +CG+WVTALCPYGE+GCPDN+GDYD+VMPEPM+GT GSG    YKVRVADVD++ + DCS  FYL+   EAP AGD  GPY+ VTSP++GD A AG+EYTVEFDY+NGLGS + RF IDLY   GSGDCGT++ ++CDKP IGCKDSMGDYDV IPED   G Y IRVG FEDD+V+GCS  FE+
Sbjct:    2 LGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSG----YKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEI 233          
BLAST of mRNA_H-paniculata_contig6292.14059.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 326 bits (836), Expect = 1.970e-103
Identity = 160/257 (62.26%), Postives = 190/257 (73.93%), Query Frame = 2
Query:  185 GVLSAASALKVVTPTDDLTVIADSTYTVEWENTEKDHRYEIDLYYCNSYCTEGDCGEWVTALCPYGENGCPDNDGDYDVVMPEPMTGT-GSGKQGRYKVRVADVDEESNMDCSPPFYLLPSDEAPVAGDVDGPYLKVTSPTNGDMAMAGDEYTVEFDYNNGLGSKINRFKIDLYKKGGSGDCGTWVTSICDKPAIGCKDSMGDYDVSIPEDTPVGQYAIRVGVFEDDTVFGCSGTFEVEPSNVDAGYGAPHSMSYMF 952
            G+L  ASAL+VVTP     V++   YTVEW  T  + R+EIDLYYCNS C E +CGEWVTALCPYGE+GCPDN+GDYD+VMPEPM+GT GSG    YKVRVADVD+E + DCS  FYL+   +AP A D  GPY+ VTSP+ GD A AG+EYTVEFDY+NGLGS + RF IDLY   GSGDCGT++ ++CDKP IGCKDSMGDYDV IPED   G Y IRVG FED++V+GCS  FE+  ++         SMSY F
Sbjct:   13 GMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSG----YKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGAD-------DSSMSYRF 258          
BLAST of mRNA_H-paniculata_contig6292.14059.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 2.030e-102
Identity = 159/254 (62.60%), Postives = 188/254 (74.02%), Query Frame = 2
Query:  191 LSAASALKVVTPTDDLTVIADSTYTVEWENTEKDHRYEIDLYYCNSYCTEGDCGEWVTALCPYGENGCPDNDGDYDVVMPEPMTGTGSGKQGRYKVRVADVDEESNMDCSPPFYLLPSDEAPVAGDVDGPYLKVTSPTNGDMAMAGDEYTVEFDYNNGLGSKINRFKIDLYKKGGSGDCGTWVTSICDKPAIGCKDSMGDYDVSIPEDTPVGQYAIRVGVFEDDTVFGCSGTFEVEPSNVDAGYGAPHSMSYMF 952
            L AA+AL+VVTP+ DL V+AD TYTVEW   +   R+EIDLY+C S C E  CG+WVTALCPYGE GCPDN+GDYD+VMPEPM+G  +     YKVRV DV +E +MDCS  FYL+ S++AP AG   G +L VTSP  GD A AG+EYTVEFDY+NG+GSK++RF IDLY   G GDCGT+VTSICDKP+IGCKDSMGDYDV IP DT  G Y IRVG FED+ ++GCSGTF +         G   SMSY F
Sbjct:   14 LGAANALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSG---YKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMG-------GDDESMSYDF 256          
BLAST of mRNA_H-paniculata_contig6292.14059.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 5.080e-98
Identity = 154/237 (64.98%), Postives = 180/237 (75.95%), Query Frame = 2
Query:  185 GVLSAASALKVVTPTDDLTVIADSTYTVEWENTEKDHRYEIDLYYCNSYCTEGDCGEWVTALCPYGENGCPDNDGDYDVVMPEPMTGTGSGKQGRYKVRVADVDEESNMDCSPPFYLLPSDEAPVAGDVDGPYLKVTSPTNGDMAMAGDEYTVEFDYNNGLGSKINRFKIDLYKKGGSGDCGTWVTSICDKPAIGCKDSMGDYDVSIPEDTPVGQYAIRVGVFEDDTVFGCSGTFEV 895
            G+L AA+AL+VV+P     V+ADS YTVEW       RY+IDLYYC S C E +CG+WVTALCPYG++GCPD  GDYDVVMPEPM GT SG    YKV V D  +ES+  CS  F L+ S EAP A D+ G Y+ VTSP++GD AMAG EYTVEFDY+NGLGS +NRF IDLY  GGSGDCGT+VT+ICDKP+IGCKDS GDYDV IP  T  G Y+IRVGVFEDD V+GCS +FE+
Sbjct:   12 GMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSG-RYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSG----YKVMVTDSSDESDYGCSGDFTLIASTEAPDATDM-GAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEI 242          
BLAST of mRNA_H-paniculata_contig6292.14059.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 303 bits (776), Expect = 1.410e-94
Identity = 144/241 (59.75%), Postives = 188/241 (78.01%), Query Frame = 2
Query:  185 GVLSAASALKVVTPTDDLTVIADSTYTVEWENTEKDHRYEIDLYYCNSYCTEGDCGEWVTALCPYGENGCPDNDGDYDVVMPEPMTGTGSGKQGRYKVRVADVDEESNMDCSPPFYLLPSDEAPVAGDVDGPYLKVTSPTNGDMAMAGDEYTVEFDYNNGLGSKINRFKIDLYKKGGSGDCGTWVTSICDKPAIGCKDSMGDYDVSIPEDTPVGQYAIRVGVFEDDTVFGCSGTFEVEPSN 907
            G+LSAA+AL+VV+P   ++V+AD  YTVEW  T    R+EIDLYYCNS+C +  CG+WVTALCPYG +GCPD+ GDYD++MPEPM+GT SG    YKV V + ++ES+M CS  F L+ S++AP AG++ G  L VTSP++GD AMAG+ YTVE+DY NG GS  +RF +DLY  GG+GDCGT+VT++CD+P+IGC DS GDYDV IP DTP G Y+IRVGVF+D+ ++ CS TFEV+ S+
Sbjct:   12 GMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTG-RFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSSG----YKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEM-GYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSD 246          
BLAST of mRNA_H-paniculata_contig6292.14059.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 302 bits (774), Expect = 2.780e-94
Identity = 150/244 (61.48%), Postives = 181/244 (74.18%), Query Frame = 2
Query:  185 GVLSAASALKVVTPTDDLTVIADSTYTVEWENTEKDHRYEIDLYYCNSYCTEGDCGEWVTALCPYGENGCPDNDGDYDVVMPEPMTGTGSGKQGRYKVRVADVDEESNMDCSPPFYLLPSDEAPVAGDVDGPYLKVTSPTNGDMAMAGDEYTVEFDYNNGLGSKINRFKIDLYKKG-GSGDCGTWVTSICDKPAIGCKDSMGDYDVSIPEDTPVGQYAIRVGVFEDDTVFGCSGTFEVEPSNVD 913
            G+L AA+AL+VV+P   ++VIAD TYTVEW  T  D R+EIDLYYC S+C E +CG+WVTALCPYG +GCPD  GDYD+VMPEPM GT SG    YKV V D ++ES+M CS  F L+ S +AP AG+V G  L VTSP++GD AMAG  YTVE+DY NGLGS  +RF IDLY  G G+GDCGT+V ++CDKP+IGC DS GDYDV IP DTP G Y++RVGVF DD +F CS  FE+     D
Sbjct:   12 GMLGAANALEVVSPAAGISVIADRTYTVEWTGTS-DSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTSSG----YKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEV-GYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTD 249          
BLAST of mRNA_H-paniculata_contig6292.14059.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 9.410e-87
Identity = 135/200 (67.50%), Postives = 159/200 (79.50%), Query Frame = 2
Query:  185 GVLSAASALKVVTPTDDLTVIADSTYTVEWENTEKDHRYEIDLYYCNSYCTEGDCGEWVTALCPYGENGCPDNDGDYDVVMPEPMTGT-GSGKQGRYKVRVADVDEESNMDCSPPFYLLPSDEAPVAGDVDGPYLKVTSPTNGDMAMAGDEYTVEFDYNNGLGSKINRFKIDLYKKGGSGDCGTWVTSICDKPAIGCKDS 781
            G+L AA+ALKV TP+  LTVIAD TYTVEW  T  D+R+EIDLYYC S C E DCG+WVTALCPYGE+GCPDN+GDYD+VMPEPM+GT GSG    YKVRV D+ +E + DCS  FYL+ S EAP  GD DGP L+VTSP +GD+A    EYTVEFDY+NG+GS+++RF IDLY+  G GDCGT+V SICDKP IGCKDS
Sbjct:   13 GMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSG----YKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208          
BLAST of mRNA_H-paniculata_contig6292.14059.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 4.860e-81
Identity = 131/191 (68.59%), Postives = 151/191 (79.06%), Query Frame = 2
Query:  338 EGDCGEWVTALCPYGENGCPDNDGDYDVVMPEPMTGT-GSGKQGRYKVRVADVDEESNMDCSPPFYLLPSDEAPVAGDVDGPYLKVTSPTNGDMAMAGDEYTVEFDYNNGLGSKINRFKIDLYKKGGSGDCGTWVTSICDKPAIGCKDSMGDYDVSIPEDTPVGQYAIRVGVFEDDTVFGCSGTFEVEPSN 907
            E +CGEWVTALCPYG  GCPDN+GDYD+VMPEPM+GT GSG    YKVRVADVD   + DCS  FYL+ S EAPV G  D PYL VTSP+ GD A AG EYTVEFDY+NG+GS+++RFKIDLY  GG+GDCGTWV ++CDK AIGCKDSMGDYDV IPE    G Y+IRVG FEDD ++GCSG FE+  S+
Sbjct:   13 EDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSG----YKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVGSS 199          
BLAST of mRNA_H-paniculata_contig6292.14059.1 vs. uniprot
Match: A0A6H5KR87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR87_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 8.420e-74
Identity = 118/193 (61.14%), Postives = 144/193 (74.61%), Query Frame = 2
Query:  338 EGDCGEWVTALCPYGENGCPDNDGDYDVVMPEPMTGTGSGKQGRYKVRVADVDEESNMDCSPPFYLLPSDEAPVAGDVDGPYLKVTSPTNGDMAMAGDEYTVEFDYNNGLGSKINRFKIDLYKKG-GSGDCGTWVTSICDKPAIGCKDSMGDYDVSIPEDTPVGQYAIRVGVFEDDTVFGCSGTFEVEPSNVD 913
            E DCG+WVTALCPYG +GCPD  GDYD+VMPEPM GT SG    YK+ V D ++ES+M CS  F L+ S +AP AG+V G  L V SP++GD+AMAG+ YTVE+DYNNGLGS  +RF IDLY  G G+GDCGT+V ++CDKP IGC DS GDYDV IP DTP G Y++RVGVF D+ +F CS  FE+   + D
Sbjct:    2 EDDCGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTSSG----YKIMVTDSNDESSMGCSGDFTLVASTDAPAAGEV-GYSLTVNSPSDGDIAMAGEVYTVEWDYNNGLGSSKDRFAIDLYTYGTGTGDCGTYVATLCDKPTIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDEIMFDCSEAFEIVNDSTD 189          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6292.14059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JRG9_9PHAE7.170e-10763.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI46_ECTSI1.620e-10466.53EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JFT9_9PHAE1.970e-10362.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI2.030e-10262.60EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7G3E8_ECTSI5.080e-9864.98Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JY62_9PHAE1.410e-9459.75GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
D7G3F0_ECTSI2.780e-9461.48EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FH21_ECTSI9.410e-8767.50Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JEJ8_9PHAE4.860e-8168.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR87_9PHAE8.420e-7461.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6292contigH-paniculata_contig6292:1317..5033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSecreted protein similar to EsV-1-163
Ec32 orthologEc-26_003200.1
Exons5
Model size2204
Cds size810
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930720.3099217-UTR-H-paniculata_contig6292:1316..25651622930720.3099217-UTR-H-paniculata_contig6292:1316..2565Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6292 1317..2565 -
1691481421.8888266-UTR-H-paniculata_contig6292:1316..25651691481421.8888266-UTR-H-paniculata_contig6292:1316..2565Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6292 1317..2565 -
1622930720.4435961-UTR-H-paniculata_contig6292:4888..50331622930720.4435961-UTR-H-paniculata_contig6292:4888..5033Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6292 4889..5033 -
1691481421.962449-UTR-H-paniculata_contig6292:4888..50331691481421.962449-UTR-H-paniculata_contig6292:4888..5033Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6292 4889..5033 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930720.3352692-CDS-H-paniculata_contig6292:2565..27381622930720.3352692-CDS-H-paniculata_contig6292:2565..2738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6292 2566..2738 -
1691481421.9011295-CDS-H-paniculata_contig6292:2565..27381691481421.9011295-CDS-H-paniculata_contig6292:2565..2738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6292 2566..2738 -
1622930720.3649683-CDS-H-paniculata_contig6292:2939..30751622930720.3649683-CDS-H-paniculata_contig6292:2939..3075Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6292 2940..3075 -
1691481421.9124095-CDS-H-paniculata_contig6292:2939..30751691481421.9124095-CDS-H-paniculata_contig6292:2939..3075Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6292 2940..3075 -
1622930720.3836796-CDS-H-paniculata_contig6292:3298..36041622930720.3836796-CDS-H-paniculata_contig6292:3298..3604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6292 3299..3604 -
1691481421.930051-CDS-H-paniculata_contig6292:3298..36041691481421.930051-CDS-H-paniculata_contig6292:3298..3604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6292 3299..3604 -
1622930720.4115515-CDS-H-paniculata_contig6292:4399..44841622930720.4115515-CDS-H-paniculata_contig6292:4399..4484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6292 4400..4484 -
1691481421.941723-CDS-H-paniculata_contig6292:4399..44841691481421.941723-CDS-H-paniculata_contig6292:4399..4484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6292 4400..4484 -
1622930720.4287195-CDS-H-paniculata_contig6292:4778..48881622930720.4287195-CDS-H-paniculata_contig6292:4778..4888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6292 4779..4888 -
1691481421.9532743-CDS-H-paniculata_contig6292:4778..48881691481421.9532743-CDS-H-paniculata_contig6292:4778..4888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6292 4779..4888 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6292.14059.1prot_H-paniculata_contig6292.14059.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6292 2566..4888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6292.14059.1

>prot_H-paniculata_contig6292.14059.1 ID=prot_H-paniculata_contig6292.14059.1|Name=mRNA_H-paniculata_contig6292.14059.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=270bp
MVSSCAFVTVAVAGVLSAASALKVVTPTDDLTVIADSTYTVEWENTEKDH
RYEIDLYYCNSYCTEGDCGEWVTALCPYGENGCPDNDGDYDVVMPEPMTG
TGSGKQGRYKVRVADVDEESNMDCSPPFYLLPSDEAPVAGDVDGPYLKVT
SPTNGDMAMAGDEYTVEFDYNNGLGSKINRFKIDLYKKGGSGDCGTWVTS
ICDKPAIGCKDSMGDYDVSIPEDTPVGQYAIRVGVFEDDTVFGCSGTFEV
EPSNVDAGYGAPHSMSYMF*
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mRNA from alignment at H-paniculata_contig6292:1317..5033-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6292.14059.1 ID=mRNA_H-paniculata_contig6292.14059.1|Name=mRNA_H-paniculata_contig6292.14059.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3717bp|location=Sequence derived from alignment at H-paniculata_contig6292:1317..5033- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTCCACCCACCACATCACCCACCCTTCTCACAATCTCTCCACACGAAC ATTCATCCCCACACGACATACATCACATACCTCGTGTAAACACTGCTGTG AACGAAGTCGCAGCTAATCACTACACCAACGCAAAGTCAATCAAGATGGT GTCTTCTTGTGCCTTCGTAACTGTGGCTGTGGCCGGTGTGCTTAGCGCCG CCAGCGCTCTGAAGGTCGTCACTCCTACGGATGATCTGACTGTCATCGCA GACAGGTGAGGTCGGAACGACACCTTTAGGGAAAAGGTGTGTAGTGAGCG AGCTGTGCCATTTAGGAGGGACGGCTGCGGTGCAAACAGGCAGTCAGGGT CAACGATGACTGATTGTGGGTATATTTTTTGTGGATGTTCTGGTAAAGAG AATAATGTTCGATTACTTGCTCTTCGTATATCCTGGATATTGCGTCAACC AGTTTTTTTCTCCCGAAAGTATGTGAGAATGGAGTCGTTAAATGATTCCT ACGTCGTGCTAATCCATTCCATCGGACTGTCTCATCCCTCGCTGTGCAGC ACATACACGGTAGAATGGGAAAACACTGAGAAGGACCACCGGTACGAGAT TGATCTCTACTACTGCAACTCGTACTGCACAGAGGTGAGCGCCGAGCTTG CTAGTCAAGTATCTCTGTTCTAGGGCTATCGCAATATATATGCATGTCCC AAGTTTGGCCACTTATTTATTGTTCAGCCATGGTTCTTCCGTCTTCGGCC GAAGCAACCCCACGCATGTAATCCGTAACCAGAACCGATGTCTGGTTGTG TCAATTAGATGTGCATGAGAAGCTTACTCGCCATGTAGTTTGCTGTGGTA CAGGCGAATTCATGAAGAGACCGGAGTTTGTTGCCAAAATTACTCTCACC CATGTTTGTCTTAGATTTCATCCCACCAAACATGCGGCAGGGATCTGTGA CGGAAATGGGTCCGATATTATTTAATTTTAGTCCTCTATGCTCTTGTATT CATCGGGTTGCCGCATCTTTTGGTTCTGATACGTTATCGGTTGGATAGCG GAGCACGCGATATCATTCACAATCGTGGTTGAACGTGCTCGTACGCCGAG CTACTCGTTGCTATCGGACTCGAGCGGAAAATATAAGAATAATGAGCGGA TGCAGCTCATGAATATTCCAGCGGCTCTGATGTATTCGTGTTCGTGACCT TGCGTCATATGATGCTTCCGTTGAAGCATGGCGAAGTTGTTCGGCCGCAC TGAAGCAAGAGTCAACTCTTGCCTCGAGTATCAGATACCCCAGCGCATGC CATGTCCGACCCTGATGAACGTGAATCATTTTTGCGTTGTACTTTTGGAG TCGGGGAAGGTGTTTATATATGTATATATATATTGAGTTCCGTCTTAAGG TATTAATTCACATCTGATCCTACTAACAGGGCGACTGCGGAGAATGGGTA ACTGCCCTGTGCCCTTACGGTGAGAACGGTTGCCCGGACAATGACGGTGA TTACGACGTCGTCATGCCGGAGCCCATGACGGGAACTGGATCTGGGAAGC AGGGCCGCTACAAGGTGCGCGTGGCTGACGTCGATGAAGAGTCCAACATG GACTGCTCCCCCCCTTTCTACCTTCTTCCGTCCGACGAGGCTCCTGTTGC GGGAGATGTGGATGGACCTTACCTCAAGGTCACCTCCCCCACGAACGGTG ATATGGCAATGGCCGGTGATGAGTACACTGTCGAGGTGAGGATTCAATTA TCAATGCCTCTGAGTGTATCGATAGTAATGAAACCTGAATCATTGTAGGG TTCAAATCTGGTGGTTCGTCGTAGAGACCCGGTATGAACGGTTAGTAGAA GTAATAAAAGGGTTTTGGATGTCTTGATGCCATGCAACATTAGTGTTGGG GGGGCAGTTTATTTTTGGAAGTTTGTCCCTGACGACTTCCCATTGAACTC TTCGGCAGTTCGACTACAACAACGGTCTCGGCTCCAAGATTAACCGTTTC AAGATTGACCTGTACAAGAAGGGCGGCTCTGGTGATTGCGGAACGTGGGT CACGTCTATCTGTGACAAGCCGGCCATTGGTTGCAAAGATTCAAGTGAGT GGCGTGTATGTGGTACATTGTCAGAAGGCACTTTGCCTCACGAGTGAGAA GATGTCATGAAGTAATGTAAAGTCAAGGTAGGTGAGTGAATGGGATGTTC TTCTCAAGCTCTTGAGTCCCCGAAGACGGTGGTGTTATAGTACGTCTCCT CACTATGCCTTTGCTCGCATTTTTTTCCGTTCTGAATCGTGACAGTGGGC GACTACGATGTGTCTATTCCCGAGGACACCCCGGTGGGCCAATACGCAAT CCGCGTTGGCGTCTTCGAAGATGACACTGTGTTCGGTTGCTCAGGTACCT TCGAAGTCGAGCCATCAAATGTAGATGCTGGTTACGGCGCGCCCCACAGC ATGTCGTACATGTTCTAAGTTTTGCCGTTGTTATACGGGGCAGAAATGTT TTCGTGTACCATTTAGTCGTGGGTTGTGGTAGCTGACGAGCGCCCAGGCA GCGATGCCTTCGAGTAGTTGCTCCGCACCATATCCGTTTCGAGTGCTCGT TCTTTTTTTGAGGCTCCCATAGTTAACTTTGGATCGGCAGTCGTGGCATT CGTCTCGGTCGTTGATTTTGTATCGGGGTGTTCAGTTGTCGCCTTGGCGA TTGGTCTCGTGCGTTCATGGCATATCGTAACCCTGCCGTCAGACATGACC TCGATATTTATCTGTATTTTGTCGAGGTTCCCGTCACATTAAGTGCTGGG GTAGGTTAGGTTTTGTTCTTGGTTGTCACGTAAATGAATCTTTTTACCTT GCATTTAGTCTCGTTTTTTACATGTCCTTGCGTATAAACATGTTGGTCAG GGTGAATCTTGGAATATGACGATTGATGAGTTAAGACGAAGATTTCATGA CGGGATGGTTCGTTTTTGGTGTATGCTGCCGCTGACTGGTACACGCCTTG GTGTTGACCGTACAGTTGCGCGCTTCAACAGTTTTTCTTTCGCTTTGTAT GACAGTTGGTGTTTCAACAACTGCGGCAGTCGACATCATCTGTATGGTAA CAGGCGTTTTACATTTTTGTAGAAATCTTTTTCGTGTATGTACAGGGATT TGCCCAACGTTAGTTGAACATCTCGTCCGTCTTGTAGTTTCATTTATATC GGACGAAGCGAAGAATGTCTTGATACTCGAGGTACTAAACGTAAGTCCCT GACATTCCGTCCGCGGTTCGTATCTAAAATTGTGTTGATGTTGAACAATG GTGTGGTCGTGAATAGCTTGTACGTTAAAACTGCAATTTGCACGAAAGTG TTGGTTTTTGTAGTCACGTACTGCCTGCCGCTCAATTTTATTGAAGAATG TGATGTCGATCTTCAAATACGTTCCATAAAGTGGATGAAAAGCTTGTCGA TTTCGGGTAACCCTTGTGCACTCGTGCCAAGGCTCAGCTGTTACCGGAAC TCTATTGTGCCAGCTGGAAAATGACTGGATGGTGGAAGTGATTTTTTGAT CCAACTTTTCCACTTTGTCGAATCACCACTGTAATATTCTCTAATTTGGA TGGGGGAAAAGAATAACCATATAAACTTCAATCTCGTATCCGCGCGCTGG ACAGTTCGGAGTGTAGGACATATCCAAGGTTCCACGGACCTACGCCCGAA CGGGTACTGTAGCTGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig6292:1317..5033-

>mRNA_H-paniculata_contig6292.14059.1 ID=mRNA_H-paniculata_contig6292.14059.1|Name=mRNA_H-paniculata_contig6292.14059.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1620bp|location=Sequence derived from alignment at H-paniculata_contig6292:1317..5033- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTCTTCTTGTGCCTTCGTAACTGTGGCTGTGGCCGGTGTGCTTAG
CGCCGCCAGCGCTCTGAAGGTCGTCACTCCTACGGATGATCTGACTGTCA
TCGCAGACAGATGGTGTCTTCTTGTGCCTTCGTAACTGTGGCTGTGGCCG
GTGTGCTTAGCGCCGCCAGCGCTCTGAAGGTCGTCACTCCTACGGATGAT
CTGACTGTCATCGCAGACAGCACATACACGGTAGAATGGGAAAACACTGA
GAAGGACCACCGGTACGAGATTGATCTCTACTACTGCAACTCGTACTGCA
CAGAGCACATACACGGTAGAATGGGAAAACACTGAGAAGGACCACCGGTA
CGAGATTGATCTCTACTACTGCAACTCGTACTGCACAGAGGGCGACTGCG
GAGAATGGGTAACTGCCCTGTGCCCTTACGGTGAGAACGGTTGCCCGGAC
AATGACGGTGATTACGACGTCGTCATGCCGGAGCCCATGACGGGAACTGG
ATCTGGGAAGCAGGGCCGCTACAAGGTGCGCGTGGCTGACGTCGATGAAG
AGTCCAACATGGACTGCTCCCCCCCTTTCTACCTTCTTCCGTCCGACGAG
GCTCCTGTTGCGGGAGATGTGGATGGACCTTACCTCAAGGTCACCTCCCC
CACGAACGGTGATATGGCAATGGCCGGTGATGAGTACACTGTCGAGGGCG
ACTGCGGAGAATGGGTAACTGCCCTGTGCCCTTACGGTGAGAACGGTTGC
CCGGACAATGACGGTGATTACGACGTCGTCATGCCGGAGCCCATGACGGG
AACTGGATCTGGGAAGCAGGGCCGCTACAAGGTGCGCGTGGCTGACGTCG
ATGAAGAGTCCAACATGGACTGCTCCCCCCCTTTCTACCTTCTTCCGTCC
GACGAGGCTCCTGTTGCGGGAGATGTGGATGGACCTTACCTCAAGGTCAC
CTCCCCCACGAACGGTGATATGGCAATGGCCGGTGATGAGTACACTGTCG
AGTTCGACTACAACAACGGTCTCGGCTCCAAGATTAACCGTTTCAAGATT
GACCTGTACAAGAAGGGCGGCTCTGGTGATTGCGGAACGTGGGTCACGTC
TATCTGTGACAAGCCGGCCATTGGTTGCAAAGATTCAATTCGACTACAAC
AACGGTCTCGGCTCCAAGATTAACCGTTTCAAGATTGACCTGTACAAGAA
GGGCGGCTCTGGTGATTGCGGAACGTGGGTCACGTCTATCTGTGACAAGC
CGGCCATTGGTTGCAAAGATTCAATGGGCGACTACGATGTGTCTATTCCC
GAGGACACCCCGGTGGGCCAATACGCAATCCGCGTTGGCGTCTTCGAAGA
TGACACTGTGTTCGGTTGCTCAGGTACCTTCGAAGTCGAGCCATCAAATG
TAGATGCTGGTTACGGCGCGCCCCACAGCATGTCGTACATGTTCTAATGG
GCGACTACGATGTGTCTATTCCCGAGGACACCCCGGTGGGCCAATACGCA
ATCCGCGTTGGCGTCTTCGAAGATGACACTGTGTTCGGTTGCTCAGGTAC
CTTCGAAGTCGAGCCATCAAATGTAGATGCTGGTTACGGCGCGCCCCACA
GCATGTCGTACATGTTCTAA
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