mRNA_H-paniculata_contig62707.14032.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62707.14032.1
Unique NamemRNA_H-paniculata_contig62707.14032.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig62707.14032.1 vs. uniprot
Match: A0A6G6D7F4_ECTSI (Putative peroxiredoxin ycf42 n=5 Tax=Ectocarpales TaxID=2877 RepID=A0A6G6D7F4_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 1.520e-91
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 
Query:    1 PTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSYNILHDSGVALRGLFIIDKKGIIQYSTTNNLSFGRSVDETLRILQAIQYITENPDEVCPSDWEPGDETISL 402
            PTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSYNILHDSGVALRGLFIIDKKGIIQYSTTNNLSFGRSVDETLRILQAIQYITENPDEVCPSDWEPGDETISL
Sbjct:   53 PTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSYNILHDSGVALRGLFIIDKKGIIQYSTTNNLSFGRSVDETLRILQAIQYITENPDEVCPSDWEPGDETISL 186
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BLAST of mRNA_H-paniculata_contig62707.14032.1 vs. uniprot
Match: A0A6B7IKH9_9PHAE (Putative peroxiredoxin ycf42 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A6B7IKH9_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 5.660e-87
Identity = 127/134 (94.78%), Postives = 132/134 (98.51%), Query Frame = 1 
Query:    1 PTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSYNILHDSGVALRGLFIIDKKGIIQYSTTNNLSFGRSVDETLRILQAIQYITENPDEVCPSDWEPGDETISL 402
            PTEITAFSDRF+EFSSLDTEVLGVSVDSEYSHLLWTQTKRE+GGVGLL YPLVSDIKKEISNSYNIL +SGVALRGLFIIDKKG+IQYSTTNNLSFGRSVDETLRILQAIQYITENPDEVCPSDWEPGD+TISL
Sbjct:   53 PTEITAFSDRFKEFSSLDTEVLGVSVDSEYSHLLWTQTKREDGGVGLLEYPLVSDIKKEISNSYNILDESGVALRGLFIIDKKGVIQYSTTNNLSFGRSVDETLRILQAIQYITENPDEVCPSDWEPGDDTISL 186
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BLAST of mRNA_H-paniculata_contig62707.14032.1 vs. uniprot
Match: A0A516ICQ5_9PHAE (Putative peroxiredoxin ycf42 n=29 Tax=Laminariales TaxID=2886 RepID=A0A516ICQ5_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 1.040e-82
Identity = 120/134 (89.55%), Postives = 129/134 (96.27%), Query Frame = 1 
Query:    1 PTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSYNILHDSGVALRGLFIIDKKGIIQYSTTNNLSFGRSVDETLRILQAIQYITENPDEVCPSDWEPGDETISL 402
            PTEIT+FSDRF+EFSSLDTEVL VSVDSEYSHL W QTKRE+GG+G L+YPLVSD+KKEISNSYNILHDSGVALRGLFIIDKKG+IQYSTTNNLSFGRSVDETLRILQAIQ+ITENPDEVCPSDWEPGDETI +
Sbjct:   53 PTEITSFSDRFKEFSSLDTEVLAVSVDSEYSHLSWVQTKREDGGLGPLSYPLVSDLKKEISNSYNILHDSGVALRGLFIIDKKGVIQYSTTNNLSFGRSVDETLRILQAIQHITENPDEVCPSDWEPGDETIYI 186
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BLAST of mRNA_H-paniculata_contig62707.14032.1 vs. uniprot
Match: A0A1L2F1U3_9PHAE (Ycf42 n=17 Tax=Fucales TaxID=3009 RepID=A0A1L2F1U3_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 3.030e-75
Identity = 110/134 (82.09%), Postives = 120/134 (89.55%), Query Frame = 1 
Query:    1 PTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSYNILHDSGVALRGLFIIDKKGIIQYSTTNNLSFGRSVDETLRILQAIQYITENPDEVCPSDWEPGDETISL 402
            PTEIT+FSDRFEEF  LDTE+LGVSVDSEYSHL W Q +REEGG+G L YPLVSD+KKEI+ SYN+L DSGVALRGLFIIDKKG+IQYSTTNNLS GRSVDETLRILQA+QY+TENPDE CP  WEPGDETI L
Sbjct:   53 PTEITSFSDRFEEFMDLDTEILGVSVDSEYSHLAWLQIEREEGGLGELTYPLVSDLKKEITLSYNVLDDSGVALRGLFIIDKKGVIQYSTTNNLSVGRSVDETLRILQAVQYVTENPDEACPVGWEPGDETIYL 186
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BLAST of mRNA_H-paniculata_contig62707.14032.1 vs. uniprot
Match: A0A8F0JZM2_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZM2_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 1.230e-74
Identity = 110/132 (83.33%), Postives = 121/132 (91.67%), Query Frame = 1 
Query:    1 PTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSYNILHDSGVALRGLFIIDKKGIIQYSTTNNLSFGRSVDETLRILQAIQYITENPDEVCPSDWEPGDETI 396
            PTEIT+FSDRF EFSSLDTE+LGVSVDS+YSHL W QT+R+EGG+GLL YPLVSD+ KEISN+YNIL DSGVALRGLFIIDK+GIIQYST NNLSFGRSVDETLRILQAIQ++TENPDE CP DW PGD TI
Sbjct:   53 PTEITSFSDRFYEFSSLDTEILGVSVDSKYSHLTWLQTERDEGGLGLLTYPLVSDLDKEISNAYNILIDSGVALRGLFIIDKEGIIQYSTINNLSFGRSVDETLRILQAIQHVTENPDEACPVDWNPGDVTI 184
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BLAST of mRNA_H-paniculata_contig62707.14032.1 vs. uniprot
Match: A0A8E5XRD7_9PHAE (Uncharacterized protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRD7_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 2.630e-71
Identity = 101/134 (75.37%), Postives = 118/134 (88.06%), Query Frame = 1 
Query:    1 PTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSYNILHDSGVALRGLFIIDKKGIIQYSTTNNLSFGRSVDETLRILQAIQYITENPDEVCPSDWEPGDETISL 402
            PTEI AFSDRFEEFSSL  E+LG+S+DSEYSHL W QT RE GG+G LNYPL+SDI KE+S  YN+L  SGVALRGLFI+DK+G+IQYS+ NNLSFGRSVDETLRILQAIQY+ ++PDEVCP+DW PGDETI++
Sbjct:   54 PTEIIAFSDRFEEFSSLGAEILGISIDSEYSHLAWLQTHRENGGLGRLNYPLISDITKEVSRGYNVLLSSGVALRGLFIVDKEGVIQYSSANNLSFGRSVDETLRILQAIQYVQQSPDEVCPADWNPGDETINI 187
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BLAST of mRNA_H-paniculata_contig62707.14032.1 vs. uniprot
Match: A0A8F0JXH3_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXH3_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 8.180e-70
Identity = 100/132 (75.76%), Postives = 119/132 (90.15%), Query Frame = 1 
Query:    1 PTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSYNILHDSGVALRGLFIIDKKGIIQYSTTNNLSFGRSVDETLRILQAIQYITENPDEVCPSDWEPGDETI 396
            PTEIT+FSDRF EF++LDTE+LGVSVDS+Y+HL W QT REEGG+G L YPLV+D++KEIS +YN+L +SGVALRGLFIIDK+GIIQY+T NNLS GRSVDETLR+LQAIQY++ENPDE CP DW PGDET+
Sbjct:   55 PTEITSFSDRFNEFAALDTEILGVSVDSKYAHLTWLQTDREEGGLGELEYPLVADLRKEISKAYNVLLNSGVALRGLFIIDKEGIIQYATINNLSVGRSVDETLRVLQAIQYVSENPDEACPVDWTPGDETV 186
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BLAST of mRNA_H-paniculata_contig62707.14032.1 vs. uniprot
Match: A0A830I1C9_9CHLO (Thioredoxin-dependent peroxiredoxin n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830I1C9_9CHLO)

HSP 1 Score: 213 bits (543), Expect = 9.130e-68
Identity = 97/132 (73.48%), Postives = 119/132 (90.15%), Query Frame = 1 
Query:    1 PTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSYNILHDSGVALRGLFIIDKKGIIQYSTTNNLSFGRSVDETLRILQAIQYITENPDEVCPSDWEPGDETI 396
            PTEITAFSDR+EEFS++DTEVLGVSVDS++SHL W QT R+EGG+G L YPLVSD+KKEI+++Y +L D GVALRGLFIIDK+G++Q+ST NNL+FGRSVDETLR+LQAIQY+  NPDEVCP+ W+PGD T+
Sbjct:   97 PTEITAFSDRYEEFSAIDTEVLGVSVDSQFSHLAWVQTDRKEGGLGDLKYPLVSDLKKEIASAYQVLSDEGVALRGLFIIDKEGVVQHSTINNLAFGRSVDETLRVLQAIQYVQNNPDEVCPAGWKPGDVTM 228
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BLAST of mRNA_H-paniculata_contig62707.14032.1 vs. uniprot
Match: A0A7S1T6Y8_9CHLO (Thioredoxin-dependent peroxiredoxin n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T6Y8_9CHLO)

HSP 1 Score: 212 bits (540), Expect = 3.050e-67
Identity = 96/132 (72.73%), Postives = 120/132 (90.91%), Query Frame = 1 
Query:    1 PTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSYNILHDSGVALRGLFIIDKKGIIQYSTTNNLSFGRSVDETLRILQAIQYITENPDEVCPSDWEPGDETI 396
            PTEITAFSDR+ EFSS++TEVLGVSVDS++SHL W QT R+EGG+G L YPLVSD+KKEIS +YN+L D G+ALRGLFIID++G+IQ+ST NNL+FGRSVDETLR+LQAIQY+ +NPDEVCP+ W+PG++T+
Sbjct:  102 PTEITAFSDRYSEFSSINTEVLGVSVDSQFSHLAWLQTDRKEGGLGDLTYPLVSDLKKEISEAYNVLTDEGIALRGLFIIDREGVIQHSTINNLAFGRSVDETLRVLQAIQYVQDNPDEVCPAGWKPGEKTM 233
[Close]
BLAST of mRNA_H-paniculata_contig62707.14032.1 vs. uniprot
Match: A0A2I4Q2C8_9PHAE (Putative peroxiredoxin ycf42 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2C8_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 3.320e-67
Identity = 99/132 (75.00%), Postives = 113/132 (85.61%), Query Frame = 1 
Query:    1 PTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSYNILHDSGVALRGLFIIDKKGIIQYSTTNNLSFGRSVDETLRILQAIQYITENPDEVCPSDWEPGDETI 396
            PTEIT+F D F+ FS LDTE+LG+SVDSE+SHL W  T+RE GG+GLLNYPLVSD+ KEIS SYN+L DSGVALRGLFIIDK GIIQYST  NLS GRSV+ETLRILQAIQY+  NPDE CP+DW PG++TI
Sbjct:   49 PTEITSFDDYFDTFSDLDTEILGISVDSEFSHLTWLDTEREYGGIGLLNYPLVSDLTKEISKSYNVLLDSGVALRGLFIIDKDGIIQYSTITNLSVGRSVEETLRILQAIQYVNNNPDESCPADWVPGEKTI 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62707.14032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G6D7F4_ECTSI1.520e-91100.00Putative peroxiredoxin ycf42 n=5 Tax=Ectocarpales ... [more]
A0A6B7IKH9_9PHAE5.660e-8794.78Putative peroxiredoxin ycf42 n=5 Tax=Scytosiphonac... [more]
A0A516ICQ5_9PHAE1.040e-8289.55Putative peroxiredoxin ycf42 n=29 Tax=Laminariales... [more]
A0A1L2F1U3_9PHAE3.030e-7582.09Ycf42 n=17 Tax=Fucales TaxID=3009 RepID=A0A1L2F1U3... [more]
A0A8F0JZM2_9PHAE1.230e-7483.33Thioredoxin domain-containing protein n=1 Tax=Desm... [more]
A0A8E5XRD7_9PHAE2.630e-7175.37Uncharacterized protein n=1 Tax=Ishige okamurae Ta... [more]
A0A8F0JXH3_9PHAE8.180e-7075.76Thioredoxin domain-containing protein n=1 Tax=Prot... [more]
A0A830I1C9_9CHLO9.130e-6873.48Thioredoxin-dependent peroxiredoxin n=2 Tax=Pycnoc... [more]
A0A7S1T6Y8_9CHLO3.050e-6772.73Thioredoxin-dependent peroxiredoxin n=1 Tax=Tetras... [more]
A0A2I4Q2C8_9PHAE3.320e-6775.00Putative peroxiredoxin ycf42 n=1 Tax=Dictyopteris ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62707contigH-paniculata_contig62707:478..882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score272.7
Seed ortholog evalue9.2e-71
Seed eggNOG ortholog2880.D1J761
Preferred nameycf42
KEGG koko:K03386,ko:K13279
KEGG Pathwayko04146,ko04214,map04146,map04214
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009056,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009636,GO:0009941,GO:0009987,GO:0010319,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0031967,GO:0031975,GO:0042221,GO:0042737,GO:0042742,GO:0042743,GO:0042744,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0050896,GO:0051186,GO:0051187,GO:0051704,GO:0051707,GO:0051716,GO:0051920,GO:0055114,GO:0070887,GO:0072593,GO:0097237,GO:0098542,GO:0098754,GO:0098869,GO:1990748
EggNOG free text desc.peroxiredoxin activity
EggNOG OGsCOG0450@1,KOG0852@2759
EC1.11.1.15
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Exons1
Model size405
Cds size405
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930716.6834817-CDS-H-paniculata_contig62707:477..8821622930716.6834817-CDS-H-paniculata_contig62707:477..882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62707 478..882 -
1691481420.2904863-CDS-H-paniculata_contig62707:477..8821691481420.2904863-CDS-H-paniculata_contig62707:477..882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62707 478..882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62707.14032.1prot_H-paniculata_contig62707.14032.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62707 478..882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62707.14032.1

>prot_H-paniculata_contig62707.14032.1 ID=prot_H-paniculata_contig62707.14032.1|Name=mRNA_H-paniculata_contig62707.14032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
PTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNY
PLVSDIKKEISNSYNILHDSGVALRGLFIIDKKGIIQYSTTNNLSFGRSV
DETLRILQAIQYITENPDEVCPSDWEPGDETISL*
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mRNA from alignment at H-paniculata_contig62707:478..882-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62707.14032.1 ID=mRNA_H-paniculata_contig62707.14032.1|Name=mRNA_H-paniculata_contig62707.14032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at H-paniculata_contig62707:478..882- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGACAGAAATAACAGCATTCAGTGATCGATTCGAAGAATTTAGTTCCCT
GGATACGGAAGTTTTAGGGGTTTCAGTCGACAGTGAATATTCACATTTAT
TATGGACTCAGACTAAACGTGAAGAAGGTGGTGTTGGATTATTAAATTAC
CCTTTAGTTTCTGATATAAAAAAGGAAATTAGCAATTCTTATAATATTTT
ACATGATTCAGGTGTTGCTCTAAGAGGCCTATTTATTATTGATAAAAAAG
GTATTATTCAGTATTCAACAACTAATAATTTATCTTTTGGACGTAGTGTG
GATGAAACTTTAAGAATTTTACAAGCAATCCAATATATAACAGAAAATCC
TGACGAGGTTTGTCCAAGTGATTGGGAACCTGGTGATGAAACAATCTCTC
TCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig62707:478..882-

>mRNA_H-paniculata_contig62707.14032.1 ID=mRNA_H-paniculata_contig62707.14032.1|Name=mRNA_H-paniculata_contig62707.14032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig62707:478..882- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGACAGAAATAACAGCATTCAGTGATCGATTCGAAGAATTTAGTTCCCT
GGATACGGAAGTTTTAGGGGTTTCAGTCGACAGTGAATATTCACATTTAT
TATGGACTCAGACTAAACGTGAAGAAGGTGGTGTTGGATTATTAAATTAC
CCTTTAGTTTCTGATATAAAAAAGGAAATTAGCAATTCTTATAATATTTT
ACATGATTCAGGTGTTGCTCTAAGAGGCCTATTTATTATTGATAAAAAAG
GTATTATTCAGTATTCAACAACTAATAATTTATCTTTTGGACGTAGTGTG
GATGAAACTTTAAGAATTTTACAAGCAATCCAATATATAACAGAAAATCC
TGACGAGGTTTGTCCAAGTGATTGGGAACCTGGTGATGAAACAATCTCTC
TCTAACCGACAGAAATAACAGCATTCAGTGATCGATTCGAAGAATTTAGT
TCCCTGGATACGGAAGTTTTAGGGGTTTCAGTCGACAGTGAATATTCACA
TTTATTATGGACTCAGACTAAACGTGAAGAAGGTGGTGTTGGATTATTAA
ATTACCCTTTAGTTTCTGATATAAAAAAGGAAATTAGCAATTCTTATAAT
ATTTTACATGATTCAGGTGTTGCTCTAAGAGGCCTATTTATTATTGATAA
AAAAGGTATTATTCAGTATTCAACAACTAATAATTTATCTTTTGGACGTA
GTGTGGATGAAACTTTAAGAATTTTACAAGCAATCCAATATATAACAGAA
AATCCTGACGAGGTTTGTCCAAGTGATTGGGAACCTGGTGATGAAACAAT
CTCTCTCTAA
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