mRNA_H-paniculata_contig62633.14024.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: UPI00092F2BFF (uncharacterized protein LOC109329337 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F2BFF) HSP 1 Score: 68.2 bits (165), Expect = 1.010e-11 Identity = 37/76 (48.68%), Postives = 48/76 (63.16%), Query Frame = 1
Query: 1 EPKYHQEAQASLEWEHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
+PK ++EA SL+ E WQ A E EM+ + N VWT V+ K+ + +YK+K DGKVE YK RLVA GYRQ
Sbjct: 194 DPKCYEEAMRSLDHEKWQEAMESEMESMKINKVWTLVDASKDIKPIGCKWVYKKKNGADGKVETYKARLVANGYRQ 269
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI) HSP 1 Score: 66.6 bits (161), Expect = 4.450e-11 Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1
Query: 1 EPKYHQEAQASLEWEHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
EP+ ++EA AS E E W+RA E E LI N WT+ + P + ++ +I+K+K D DGKV +YK RLV G+ Q
Sbjct: 564 EPQTYEEAMASNEVEQWRRAIEEEESALIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQ 639
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: A0A182HAC3_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HAC3_AEDAL) HSP 1 Score: 64.7 bits (156), Expect = 2.110e-10 Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1
Query: 1 EPKYHQEAQASLEWEHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
EP ++EA S E E W +A E Q LIDN W V+ P ++ ++ ++KRK++ DGKV+++K RLVA G+ Q
Sbjct: 349 EPTTYEEAVGSEEKEKWIKAMSEEYQSLIDNDTWELVDPPTDRNIIGSRWVFKRKLNADGKVDRFKARLVAQGFAQ 424
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A) HSP 1 Score: 62.0 bits (149), Expect = 2.640e-10 Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 1 EPKYHQEAQASLEWEHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
+P+ +EA S + E W+ A E E++ L N W V RP+ + VV ++KRK+++DG+VE+YK RLVA GY Q
Sbjct: 30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQ 105
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: A0A1X7VXK3_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXK3_AMPQE) HSP 1 Score: 62.4 bits (150), Expect = 2.940e-10 Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 1
Query: 1 EPKYHQEAQASLEWEHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
EP EA +S E + W+ A E EM+ L N V+ VE PKNK V+ I++RKI+ DG VE+YK RLVA + Q
Sbjct: 5 EPSTINEALSSSEADKWKEAMEREMESLKANDVYDLVELPKNKEVIGSKWIFRRKINADGSVERYKARLVAQRFSQ 80
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: A0A1X7TFD5_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TFD5_AMPQE) HSP 1 Score: 58.9 bits (141), Expect = 1.220e-9 Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1
Query: 70 EMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
E + L +N VW VE PK++ VV ++KRKI E+GKVE+YK RLVA GY Q
Sbjct: 4 EFESLEENQVWDLVELPKDRRVVGSKWVFKRKIGENGKVERYKARLVAQGYSQ 56
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: A0A5N5FUF0_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FUF0_9ROSA) HSP 1 Score: 61.2 bits (147), Expect = 3.520e-9 Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1
Query: 1 EPKYHQEAQASLEWEHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
EP ++++A +S+ HW+ A + E + L G W V P+N+ V+ +YK K D+DGKV +YK RLVA G+ Q
Sbjct: 615 EPTHYKQAVSSV---HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQ 687
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: A0A151T9B6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T9B6_CAJCA) HSP 1 Score: 61.2 bits (147), Expect = 3.520e-9 Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 43 EHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
E W+ A ++E++ + NG W ++RPK VV +YK K++E GKV+K+K RLV GY Q
Sbjct: 799 EKWRNAMDIEIEAIEKNGTWELIDRPKGAKVVGVKWVYKTKLNEKGKVDKFKARLVVKGYAQ 860
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA) HSP 1 Score: 58.9 bits (141), Expect = 5.860e-9 Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 1 EPKYHQEAQASLEWEHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
EP ++++A + + HW+ A + E + L G W V P+N+ V+ +YK K D+DGKV +YK RLVA G+ Q
Sbjct: 52 EPTHYKQA---VTYVHWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQ 124
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: A0A177U1E5_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U1E5_9BASI) HSP 1 Score: 60.1 bits (144), Expect = 9.050e-9 Identity = 27/76 (35.53%), Postives = 44/76 (57.89%), Query Frame = 1
Query: 1 EPKYHQEAQASLEWEHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
EP + EA+ +WE W +A + +M L+ W V+ P + + +YK K+DE+GK +++K RLVA G+ Q
Sbjct: 731 EPATYAEARRRSDWEKWNKAMDEQMDALVGMHTWDLVQLPPGRKAIGSRWVYKLKLDEEGKADRWKARLVAQGFTQ 806 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig62633.14024.1 >prot_H-paniculata_contig62633.14024.1 ID=prot_H-paniculata_contig62633.14024.1|Name=mRNA_H-paniculata_contig62633.14024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp EPKYHQEAQASLEWEHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMMback to top mRNA from alignment at H-paniculata_contig62633:100..327- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig62633.14024.1 ID=mRNA_H-paniculata_contig62633.14024.1|Name=mRNA_H-paniculata_contig62633.14024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at H-paniculata_contig62633:100..327- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig62633:100..327- >mRNA_H-paniculata_contig62633.14024.1 ID=mRNA_H-paniculata_contig62633.14024.1|Name=mRNA_H-paniculata_contig62633.14024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig62633:100..327- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |