mRNA_H-paniculata_contig6255.14014.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6255.14014.1
Unique NamemRNA_H-paniculata_contig6255.14014.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6255.14014.1 vs. uniprot
Match: D7G2J7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J7_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.830e-41
Identity = 71/88 (80.68%), Postives = 76/88 (86.36%), Query Frame = 1 
Query:    1 QAKQELGTLFGNRAENTEVGITGDVEFVGLDGPSVVVRLTGRFWHAKADVLARVANFVLTRIPECVDVEIEDPAQLEDADP-KGRGEA 261
            +AK+EL TLFGN AENT VGITGD EFV LDGPSVVVRLTGRFWH K  VLARV NFV TRIPECVDVEIEDP+QLEDADP +G G+A
Sbjct:   19 EAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTVLARVGNFVQTRIPECVDVEIEDPSQLEDADPPQGPGQA 106
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BLAST of mRNA_H-paniculata_contig6255.14014.1 vs. uniprot
Match: A0A6H5JIN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN5_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 5.760e-40
Identity = 71/88 (80.68%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    1 QAKQELGTLFGNRAENTEVGITGDVEFVGLDGPSVVVRLTGRFWHAKADVLARVANFVLTRIPECVDVEIEDPAQLEDADPK-GRGEA 261
            +AK+EL TLFGN AENT VGITGD EFV LDGPSVVVRLTGRFWH K  VLARV NFV TRIPECVDVEIEDP+QLEDADP  G G+A
Sbjct:  111 EAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTVLARVGNFVQTRIPECVDVEIEDPSQLEDADPPPGPGQA 198
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BLAST of mRNA_H-paniculata_contig6255.14014.1 vs. uniprot
Match: A0A0G4GKJ3_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GKJ3_VITBC)

HSP 1 Score: 112 bits (280), Expect = 1.360e-29
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:    7 KQELGTLFGNRAENTEVGITGDVEFVGLDGPSVVVRLTGRFWHAKADVLARVANFVLTRIPECVDVEIEDPAQLED 234
            +QEL  LFGN  EN  VGITGDVEF GLDGP V++RL GRFWH++A VL RV  F+L RIPEC+ VEIEDPA L+D
Sbjct:   91 RQELSALFGNSEENRSVGITGDVEFAGLDGPLVILRLKGRFWHSRATVLERVTAFLLNRIPECLGVEIEDPAMLDD 166
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BLAST of mRNA_H-paniculata_contig6255.14014.1 vs. uniprot
Match: A0A7S0DXW5_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DXW5_9CRYP)

HSP 1 Score: 112 bits (279), Expect = 2.600e-29
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:    1 QAKQELGTLFGNRAENTEVGITGDVEFVGLDGPSVVVRLTGRFWHAKADVLARVANFVLTRIPECVDVEIEDPAQLEDADPKGR 252
            +AK+ LGT+FGN  EN E+GITGDV+ + LDGP   VRL GRFWH +ADVLARV N++ TRIPE ++V IEDP QL+D  P+ +
Sbjct:   95 EAKEILGTMFGNSQENREIGITGDVKLINLDGPFATVRLVGRFWHKRADVLARVENYLKTRIPEIIEVSIEDPMQLDDNLPENQ 178
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BLAST of mRNA_H-paniculata_contig6255.14014.1 vs. uniprot
Match: L1JDA8_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JDA8_GUITC)

HSP 1 Score: 110 bits (276), Expect = 5.500e-29
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:    1 QAKQELGTLFGNRAENTEVGITGDVEFVGLDGPSVVVRLTGRFWHAKADVLARVANFVLTRIPECVDVEIEDPAQLEDADPKGR 252
            ++K+ LGT+FGN  EN E+GITGDV+ V LDGP   VRL GRFWH ++DVLARV N+V TR+PE V+V IEDP QL+D  P+ +
Sbjct:   84 ESKEILGTMFGNSQENREIGITGDVQLVNLDGPFASVRLVGRFWHKRSDVLARVENYVKTRVPEIVEVSIEDPMQLDDNLPENQ 167
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BLAST of mRNA_H-paniculata_contig6255.14014.1 vs. uniprot
Match: A0A7S3EC75_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EC75_9RHOD)

HSP 1 Score: 108 bits (271), Expect = 1.760e-28
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 1 
Query:    1 QAKQELGTLFGNRAENTEVGITGDVEFVGLDGPSVVVRLTGRFWHAKADVLARVANFVLTRIPECVDVEIEDPAQLEDADPK 246
            +AK ELGTLFGN  EN EVGITGDV    LDG +VV+RLTGRFWH ++DV+ARV+ ++  RIPE  DV IED +QL+DAD K
Sbjct:   61 EAKIELGTLFGNSEENREVGITGDVSLAELDGVTVVLRLTGRFWHKRSDVVARVSQYLQNRIPEVCDVMIEDESQLDDADEK 142
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BLAST of mRNA_H-paniculata_contig6255.14014.1 vs. uniprot
Match: A0A7S3T494_EMIHU (Hypothetical protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T494_EMIHU)

HSP 1 Score: 109 bits (272), Expect = 3.380e-28
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    1 QAKQELGTLFGNRAENTEVGITGDVEFVGLDGPSVVVRLTGRFWHAKADVLARVANFVLTRIPECVDVEIEDPAQLEDA 237
            +A+++LGT+FG+  E+  VGITG  + V LDGP+VV+RL+GRFWHA+A VL R+  FVL RIPEC+ VEIEDP+QLEDA
Sbjct:   84 EAERDLGTMFGSNPESAAVGITGRADLVELDGPTVVIRLSGRFWHARARVLERLEAFVLERIPECIGVEIEDPSQLEDA 162
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BLAST of mRNA_H-paniculata_contig6255.14014.1 vs. uniprot
Match: A0A7S3EXN2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EXN2_9EUKA)

HSP 1 Score: 107 bits (268), Expect = 2.250e-27
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:    1 QAKQELGTLFGNRAENTEVGITGDVEFVGLDGPSVVVRLTGRFWHAKADVLARVANFVLTRIPECVDVEIEDPAQLEDADP 243
            +  QELGTLFG  AE+ +VGITG V FV LDGP++VV L+GRFWH ++ V+ RV +FVL RIPECV VEI D AQL+D DP
Sbjct:   53 ECMQELGTLFGTNAESLQVGITGIVNFVELDGPTMVVSLSGRFWHERSRVIERVNSFVLERIPECVGVEIVDEAQLDDTDP 133
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BLAST of mRNA_H-paniculata_contig6255.14014.1 vs. uniprot
Match: A0A7S2FRC3_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FRC3_9EUKA)

HSP 1 Score: 105 bits (262), Expect = 3.460e-26
Identity = 48/81 (59.26%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    1 QAKQELGTLFGNRAENTEVGITGDVEFVGLDGPSVVVRLTGRFWHAKADVLARVANFVLTRIPECVDVEIEDPAQLEDADP 243
            +  +ELGTLFG+ AE+ +VGITG+V FV LDGP +V+ L+GRFWH ++ V+ RV+ +V+ RIPECVDVEI D AQL+D +P
Sbjct:   59 ECMEELGTLFGSNAESLKVGITGEVSFVELDGPILVISLSGRFWHQRSVVVDRVSKYVMDRIPECVDVEIVDAAQLDDTNP 139
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BLAST of mRNA_H-paniculata_contig6255.14014.1 vs. uniprot
Match: A0A2V3IKM4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKM4_9FLOR)

HSP 1 Score: 103 bits (256), Expect = 4.110e-26
Identity = 48/80 (60.00%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:    1 QAKQELGTLFGNRAENTEVGITGDVEFVGLDGPSVVVRLTGRFWHAKADVLARVANFVLTRIPECVDVEIEDPAQLEDAD 240
            + K +LG++FGN  EN +VGITGDV    LDGP VV+RL GRFWH + DVLARV+ ++L RIPE  D+EIED  QLED++
Sbjct:   70 EVKVKLGSIFGNSQENRDVGITGDVALSSLDGPVVVLRLQGRFWHKRTDVLARVSAYLLERIPEICDIEIEDQRQLEDSE 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6255.14014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2J7_ECTSI1.830e-4180.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIN5_9PHAE5.760e-4080.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4GKJ3_VITBC1.360e-2968.42Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S0DXW5_9CRYP2.600e-2960.71Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1JDA8_GUITC5.500e-2960.71Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S3EC75_9RHOD1.760e-2864.63Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3T494_EMIHU3.380e-2863.29Hypothetical protein n=3 Tax=Emiliania huxleyi Tax... [more]
A0A7S3EXN2_9EUKA2.250e-2764.20Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S2FRC3_9EUKA3.460e-2659.26Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A2V3IKM4_9FLOR4.110e-2660.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6255contigH-paniculata_contig6255:10723..12311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.5
Seed ortholog evalue9.6e-32
Seed eggNOG ortholog2880.D7G2J7
Hectar predicted targeting categoryother localisation
EggNOG OGs2BCYA@1,2S115@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_002490.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930714.131863-CDS-H-paniculata_contig6255:10722..108481622930714.131863-CDS-H-paniculata_contig6255:10722..10848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6255 10723..10848 -
1691481419.108969-CDS-H-paniculata_contig6255:10722..108481691481419.108969-CDS-H-paniculata_contig6255:10722..10848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6255 10723..10848 -
1622930714.1440117-CDS-H-paniculata_contig6255:12164..123111622930714.1440117-CDS-H-paniculata_contig6255:12164..12311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6255 12165..12311 -
1691481419.1226578-CDS-H-paniculata_contig6255:12164..123111691481419.1226578-CDS-H-paniculata_contig6255:12164..12311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6255 12165..12311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6255.14014.1prot_H-paniculata_contig6255.14014.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6255 10723..12311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6255.14014.1

>prot_H-paniculata_contig6255.14014.1 ID=prot_H-paniculata_contig6255.14014.1|Name=mRNA_H-paniculata_contig6255.14014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
QAKQELGTLFGNRAENTEVGITGDVEFVGLDGPSVVVRLTGRFWHAKADV
LARVANFVLTRIPECVDVEIEDPAQLEDADPKGRGEAAEL*
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mRNA from alignment at H-paniculata_contig6255:10723..12311-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6255.14014.1 ID=mRNA_H-paniculata_contig6255.14014.1|Name=mRNA_H-paniculata_contig6255.14014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1589bp|location=Sequence derived from alignment at H-paniculata_contig6255:10723..12311- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGAAGCAGGAGCTGGGGACGTTGTTTGGCAATCGAGCGGAAAATAC
AGAAGTGGGCATTACTGGTGATGTGGAGTTCGTGGGTCTTGACGGGCCGA
GCGTTGTGGTACGGCTTACCGGCAGGTTTTGGCATGCCAAGGCAGACGTG
AGTTTTTGGATAGCCTCAATGGTTTCGCGTGAGTCGTAGGATCGCCAACG
CCCTATTATGTACCAGTTCATACCTGTAAAATCTCGAGAAATGCTTCCTC
ACCAGGCATACAACACGGGCTGCGCTCCACCTTTTGTGGGCATACATGAT
TCTGTGCTGCCTGTTTGCTCTGCAAGCACAAGTATATTGAAACCCGTGAA
TGAGAAGAATCTGTGCGGTGGTGACTGATATCGAATTTTTACGGAGTTAA
TAGTCTACGGTATCTCCCTCTATTAGAGCTTGTATTTCTCATGGATATTT
ATGGGGCACCATGTTGAATAAAACGTGAGGAGGAAAGCACATATGACGGC
AAACCTTAGCATCTGACTCGTGCAGCGTTCGCAAGCTGAAAAACTCAGCG
GCATTTGTTTTTAGCGTTTTTCAAGATCACTCAAAGCTCAAGCTTAAGCT
CTCACACAAGGCACGCATTTTTCGTCTGTTCTGATTTTGCACCTGTTTCT
TATGTTGAGCGAGACGTTAAGTCTGTTTGGGGCCTTTGTTGTTGATTTCG
CTATTGTCAAGTCAAATAGACCAGTTTATGTAAGGTTGTAGTGGAGTGCT
AGGTTGGTAGTCGATTTCAATCGTTGATGCAAGAATATTTATCAGCTCAC
AAAATGTACGGAGCTGCTTACGCTTTTGCGTGCACCGTGCTTCCACTGTG
CACTTCTGTTTTTATTTTGCCCCAACTCGCTGGTCTTGGAATCTAGATCT
CAACGCCTTAGTTAGCAAACTCATAAAGCCCTTTGATTACGCACCCCCCT
CGAAGCGTTTTTTAGGTCAGATGTTTTCTCGAAAACTGCAATACTGACTA
GTGATACGTAAGTTGTGTCCTTGGAAAAATCTCGTCAGGATCTGTCACTA
GAGGTGCTTTTTCGACAGTTATAAGTTCGTACGTCTCGAGAAAGCCGACT
TTAGAAACATAACCGTGTGTATACGTGTGCACAGTAAGTGGTCCTCGCAT
TTATCTTCGTAACGAGAGATGGTGCCAATAGGTGTGTGTGTGTCCAGCAT
TTTGCTCTCCATTTTCACAGCATAAAACAATGAACATTCCCCATACCGTT
CCCACGTTTAGTTGTCGTCGACTTGCTCGGCTTGGCACCTTAAAAACATG
AAAAGGTGTATGCCCTCCCTTCGTATGTCGTGCATGCCGCTCGCTTTTCA
TTATGCTGTCTGGTCTCTCGTGTTTCCCGTTTTGCGGGTGTCTGCAATCC
TTGCTGCCCATTGCTCTCCGTGCGACGACGACGACGACGACGACTGACGT
CACTGTCTTGTAGGTTCTCGCCCGCGTCGCGAACTTTGTGCTTACGAGGA
TCCCCGAGTGCGTAGATGTCGAGATCGAGGACCCGGCGCAGCTGGAGGAC
GCGGATCCCAAGGGAAGGGGAGAGGCAGCAGAGCTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig6255:10723..12311-

>mRNA_H-paniculata_contig6255.14014.1 ID=mRNA_H-paniculata_contig6255.14014.1|Name=mRNA_H-paniculata_contig6255.14014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig6255:10723..12311- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGAAGCAGGAGCTGGGGACGTTGTTTGGCAATCGAGCGGAAAATAC
AGAAGTGGGCATTACTGGTGATGTGGAGTTCGTGGGTCTTGACGGGCCGA
GCGTTGTGGTACGGCTTACCGGCAGGTTTTGGCATGCCAAGGCAGACCAG
GCGAAGCAGGAGCTGGGGACGTTGTTTGGCAATCGAGCGGAAAATACAGA
AGTGGGCATTACTGGTGATGTGGAGTTCGTGGGTCTTGACGGGCCGAGCG
TTGTGGTACGGCTTACCGGCAGGTTTTGGCATGCCAAGGCAGACGTTCTC
GCCCGCGTCGCGAACTTTGTGCTTACGAGGATCCCCGAGTGCGTAGATGT
CGAGATCGAGGACCCGGCGCAGCTGGAGGACGCGGATCCCAAGGGAAGGG
GAGAGGCAGCAGAGCTTTAGGTTCTCGCCCGCGTCGCGAACTTTGTGCTT
ACGAGGATCCCCGAGTGCGTAGATGTCGAGATCGAGGACCCGGCGCAGCT
GGAGGACGCGGATCCCAAGGGAAGGGGAGAGGCAGCAGAGCTTTAG
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