mRNA_H-paniculata_contig6254.14011.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6254.14011.1
Unique NamemRNA_H-paniculata_contig6254.14011.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6254.14011.1 vs. uniprot
Match: D7FK77_ECTSI (Poly [ADP-ribose] polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK77_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 7.090e-34
Identity = 68/79 (86.08%), Postives = 72/79 (91.14%), Query Frame = 1 
Query:    1 VAVVAAIVKSGLRIMPHSGGRVGRGIYLASENAK-RYYVTPAYAAKGPGNNVGIMFLCEAALGKEASITIDNSKLTKPP 234
            VAVVAAIVKSGLRIMPHSGGRVG+GIYLASENAK R YV PAY AKGPG N+GIMFLCEAALG EASIT+D+ KLTKPP
Sbjct:  801 VAVVAAIVKSGLRIMPHSGGRVGKGIYLASENAKSRQYVRPAYGAKGPGVNLGIMFLCEAALGNEASITVDDWKLTKPP 879
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BLAST of mRNA_H-paniculata_contig6254.14011.1 vs. uniprot
Match: H3BVN3_TETNG (Poly [ADP-ribose] polymerase n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3BVN3_TETNG)

HSP 1 Score: 94.0 bits (232), Expect = 2.950e-22
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:    1 VAVVAAIVKSGLRIMPHSGGRVGRGIYLASENAKRYYVTPAYA-AKGPGNNVGIMFLCEAALGKEASITIDNSKLTKPP 234
            +AVVAAI+KSGLRIMPHSGGRVGRGIY ASEN+K    +  YA A     N G+MFLCE ALGKE +IT DN  L K P
Sbjct:   52 IAVVAAILKSGLRIMPHSGGRVGRGIYFASENSK----SAGYALAVRTSKNTGVMFLCEVALGKENTITKDNPSLKKAP 126
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BLAST of mRNA_H-paniculata_contig6254.14011.1 vs. uniprot
Match: H2S0R8_TAKRU (Poly [ADP-ribose] polymerase n=1 Tax=Takifugu rubripes TaxID=31033 RepID=H2S0R8_TAKRU)

HSP 1 Score: 96.3 bits (238), Expect = 1.670e-21
Identity = 51/78 (65.38%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    1 VAVVAAIVKSGLRIMPHSGGRVGRGIYLASENAKRYYVTPAYAAKGPGNNVGIMFLCEAALGKEASITIDNSKLTKPP 234
            +AVVAAI+KSGLRIMPHSGGRVGRGIY ASEN+K    +  Y       N G+MFLCE ALGKE +IT+DNS L K P
Sbjct:  386 IAVVAAILKSGLRIMPHSGGRVGRGIYFASENSK----SAGYVRTS--KNTGVMFLCEVALGKEKTITVDNSSLKKAP 457
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BLAST of mRNA_H-paniculata_contig6254.14011.1 vs. uniprot
Match: A0A3B4CHY3_PYGNA (Poly [ADP-ribose] polymerase n=3 Tax=Serrasalmidae TaxID=42495 RepID=A0A3B4CHY3_PYGNA)

HSP 1 Score: 95.5 bits (236), Expect = 2.990e-21
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:    1 VAVVAAIVKSGLRIMPHSGGRVGRGIYLASENAKRYYVTPAYAAKGPGNNVGIMFLCEAALGKEASITIDNSKLTKPP 234
            VAVVAAI+KSGLRIMPHSGGRVGRGIY ASEN K    +  Y    P NN+GIMFL E ALG+E +IT+D+  L KPP
Sbjct:  383 VAVVAAILKSGLRIMPHSGGRVGRGIYFASENQK----SAGYVC--PSNNIGIMFLNEVALGREHTITVDDCGLRKPP 454
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BLAST of mRNA_H-paniculata_contig6254.14011.1 vs. uniprot
Match: C3Z2P3_BRAFL (Poly [ADP-ribose] polymerase (Fragment) n=4 Tax=Branchiostoma TaxID=7737 RepID=C3Z2P3_BRAFL)

HSP 1 Score: 94.7 bits (234), Expect = 5.750e-21
Identity = 54/78 (69.23%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:    1 VAVVAAIVKSGLRIMPHSGGRVGRGIYLASENAKRYYVTPAYAAKGPGNNVGIMFLCEAALGKEASITIDNSKLTKPP 234
            VAVVAAI+K+GLRIMPHSGGRVGRGIY ASEN+K    +  Y     GN VGIMFL E ALGKE  IT D+S LTKPP
Sbjct:  372 VAVVAAILKTGLRIMPHSGGRVGRGIYFASENSK----SAGYVGCASGN-VGIMFLNEVALGKENRITRDDSSLTKPP 444
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BLAST of mRNA_H-paniculata_contig6254.14011.1 vs. uniprot
Match: A0A1X7VTK5_AMPQE (Poly [ADP-ribose] polymerase n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VTK5_AMPQE)

HSP 1 Score: 94.7 bits (234), Expect = 6.390e-21
Identity = 54/78 (69.23%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:    1 VAVVAAIVKSGLRIMPHSGGRVGRGIYLASENAKRYYVTPAYAAKGPGNNVGIMFLCEAALGKEASITIDNSKLTKPP 234
            VAVVAAI+KSGLRIMPHSGGRVGRGIY ASEN+K    +  Y   G  NN+GIMFL E ALGKE SIT D+S L K P
Sbjct:  460 VAVVAAILKSGLRIMPHSGGRVGRGIYFASENSK----SAGYV--GCANNIGIMFLNEVALGKEHSITRDDSSLVKAP 531
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BLAST of mRNA_H-paniculata_contig6254.14011.1 vs. uniprot
Match: A0A5C6N3Q2_9TELE (Poly [ADP-ribose] polymerase n=2 Tax=Takifugu TaxID=31032 RepID=A0A5C6N3Q2_9TELE)

HSP 1 Score: 94.7 bits (234), Expect = 6.650e-21
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:    1 VAVVAAIVKSGLRIMPHSGGRVGRGIYLASENAKRYYVTPAYAAKGPGNNVGIMFLCEAALGKEASITIDNSKLTK 228
            +AVVAAI+KSGLRIMPHSGGRVGRGIY ASEN+K    + +Y       N G+MFLCE ALGKE +IT+DNS L K
Sbjct: 1376 IAVVAAILKSGLRIMPHSGGRVGRGIYFASENSK----SASYVRTS--KNTGVMFLCEVALGKEKTITVDNSSLKK 1445
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BLAST of mRNA_H-paniculata_contig6254.14011.1 vs. uniprot
Match: A0A5A9NVN5_9TELE (Poly [ADP-ribose] polymerase n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9NVN5_9TELE)

HSP 1 Score: 94.4 bits (233), Expect = 8.120e-21
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    1 VAVVAAIVKSGLRIMPHSGGRVGRGIYLASENAKRYYVTPAYAAKGPGNNVGIMFLCEAALGKEASITIDNSKLTKPP 234
            VAVVAAI+KSGLRIMPHSGGRVGRGIY ASEN+K    +  Y    P N +GIMFL E ALGKE +IT D+  L KPP
Sbjct:  388 VAVVAAILKSGLRIMPHSGGRVGRGIYFASENSK----SAGYVC--PSNQIGIMFLNEVALGKEHTITTDDHSLRKPP 459
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BLAST of mRNA_H-paniculata_contig6254.14011.1 vs. uniprot
Match: A0A818CY42_9BILA (Poly [ADP-ribose] polymerase n=3 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818CY42_9BILA)

HSP 1 Score: 94.4 bits (233), Expect = 8.600e-21
Identity = 52/79 (65.82%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 VAVVAAIVKSGLRIMPHSGGRVGRGIYLASENAKRY-YVTPAYAAKGPGNNVGIMFLCEAALGKEASITIDNSKLTKPP 234
            VAVV AI+K+GLRIMPHSGGRVG+GIY ASEN K   YV     A+  G N+GIMFL E ALGKE SIT+D+S + KPP
Sbjct:  437 VAVVVAILKTGLRIMPHSGGRVGKGIYFASENGKSSGYVG---TAQQEGKNIGIMFLNEVALGKEHSITLDDSSIKKPP 512
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BLAST of mRNA_H-paniculata_contig6254.14011.1 vs. uniprot
Match: UPI001C714845 (protein mono-ADP-ribosyltransferase PARP3-like isoform X1 n=2 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C714845)

HSP 1 Score: 94.0 bits (232), Expect = 1.120e-20
Identity = 52/79 (65.82%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 VAVVAAIVKSGLRIMPHSGGRVGRGIYLASENAKR-YYVTPAYAAKGPGNNVGIMFLCEAALGKEASITIDNSKLTKPP 234
            VAVVAAI+K+GLRIMPHSGG VG+GIY ASE+AK  YYV   Y +    +NVG MFL E ALG+E+SIT  N  LTKPP
Sbjct:  389 VAVVAAILKAGLRIMPHSGGLVGKGIYFASEHAKSSYYVGCHYGSFEGESNVGFMFLVEVALGRESSITQCNCSLTKPP 467
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6254.14011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK77_ECTSI7.090e-3486.08Poly [ADP-ribose] polymerase n=2 Tax=Ectocarpus Ta... [more]
H3BVN3_TETNG2.950e-2265.82Poly [ADP-ribose] polymerase n=1 Tax=Tetraodon nig... [more]
H2S0R8_TAKRU1.670e-2165.38Poly [ADP-ribose] polymerase n=1 Tax=Takifugu rubr... [more]
A0A3B4CHY3_PYGNA2.990e-2166.67Poly [ADP-ribose] polymerase n=3 Tax=Serrasalmidae... [more]
C3Z2P3_BRAFL5.750e-2169.23Poly [ADP-ribose] polymerase (Fragment) n=4 Tax=Br... [more]
A0A1X7VTK5_AMPQE6.390e-2169.23Poly [ADP-ribose] polymerase n=1 Tax=Amphimedon qu... [more]
A0A5C6N3Q2_9TELE6.650e-2165.79Poly [ADP-ribose] polymerase n=2 Tax=Takifugu TaxI... [more]
A0A5A9NVN5_9TELE8.120e-2166.67Poly [ADP-ribose] polymerase n=1 Tax=Triplophysa t... [more]
A0A818CY42_9BILA8.600e-2165.82Poly [ADP-ribose] polymerase n=3 Tax=Rotaria sp. S... [more]
UPI001C7148451.120e-2065.82protein mono-ADP-ribosyltransferase PARP3-like iso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6254contigH-paniculata_contig6254:131..1355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue1.1e-28
Seed eggNOG ortholog2880.D7FK77
Preferred namePARP3
KEGG koko:K10798
KEGG Pathwayko03410,ko04210,ko04212,ko04214,ko04217,map03410,map04210,map04212,map04214,map04217
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
GOsGO:0000723,GO:0003674,GO:0003824,GO:0003909,GO:0003910,GO:0003950,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005814,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006302,GO:0006464,GO:0006471,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0015630,GO:0016043,GO:0016070,GO:0016740,GO:0016757,GO:0016763,GO:0016874,GO:0016886,GO:0019219,GO:0019222,GO:0019538,GO:0022616,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0032200,GO:0032886,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0035861,GO:0036211,GO:0042592,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051103,GO:0051105,GO:0051106,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051338,GO:0051348,GO:0051493,GO:0051641,GO:0051716,GO:0051726,GO:0051972,GO:0051974,GO:0060236,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070507,GO:0070727,GO:0071704,GO:0071840,GO:0080090,GO:0090224,GO:0090304,GO:0090734,GO:0140097,GO:1901360,GO:1901564,GO:1901576,GO:1905661,GO:1905662,GO:1990166,GO:2000112,GO:2000113,GO:2000278,GO:2000279
EggNOG free text desc.NAD ADP-ribosyltransferase activity
EggNOG OGsKOG1037@1,KOG1037@2759
EC2.4.2.30
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036,ko03400
Exons2
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930713.9370987-CDS-H-paniculata_contig6254:130..2381622930713.9370987-CDS-H-paniculata_contig6254:130..238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6254 131..238 +
1691481419.041592-CDS-H-paniculata_contig6254:130..2381691481419.041592-CDS-H-paniculata_contig6254:130..238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6254 131..238 +
1622930713.9575858-CDS-H-paniculata_contig6254:1226..13551622930713.9575858-CDS-H-paniculata_contig6254:1226..1355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6254 1227..1355 +
1691481419.05785-CDS-H-paniculata_contig6254:1226..13551691481419.05785-CDS-H-paniculata_contig6254:1226..1355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6254 1227..1355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6254.14011.1prot_H-paniculata_contig6254.14011.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6254 131..1355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6254.14011.1

>prot_H-paniculata_contig6254.14011.1 ID=prot_H-paniculata_contig6254.14011.1|Name=mRNA_H-paniculata_contig6254.14011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
VAVVAAIVKSGLRIMPHSGGRVGRGIYLASENAKRYYVTPAYAAKGPGNN
VGIMFLCEAALGKEASITIDNSKLTKPPT
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mRNA from alignment at H-paniculata_contig6254:131..1355+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6254.14011.1 ID=mRNA_H-paniculata_contig6254.14011.1|Name=mRNA_H-paniculata_contig6254.14011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1225bp|location=Sequence derived from alignment at H-paniculata_contig6254:131..1355+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCGGTGGTCGCGGCCATCGTGAAGAGCGGACTCCGCATCATGCCCCA
CTCTGGCGGCCGCGTGGGACGGGGTATCTACCTTGCCTCCGAGAACGCCA
AGAGGTACGTACCTACATACACGGGTACATAGCAGAATCTAATTTGGGAA
TGAGCCAACATTTTGGTAACTGAAACATTTAAGGGAAATCTTGTGTAAAA
ACACCTACAATATTTCGAATGTCGAACCAGTAAGCCACCTACAACGCTAG
CGCCGCTCCTGGCAGCTACCTGCGCCAGGGTTATACCACCGGTATTGGTG
CTACGCGCAACTCCGGGTGGAGAGGGTCGCCGTGGCCGTGACAACCACTG
CCTTGTATACCCACTGGCCGGATGCTTTGACACCTGGAATTACCGATGTC
GCCGCAACCCCCGTTGGAGTTCAGAATCAGTTCGCCCTCCTCTGCGATTC
ACCAGGACCCGTTAGAGCCCCTCAGTCCGCCGTACCCACCCTGGTCGGTC
ACCCGGCGTACCTCTTCTGCTGGCGACCGGTCGTGCACAACGAGGTATTG
GTCTCCCGTGATTTTGGGCAGCGGGCGGTGAGGGCCGGCTGATCTTTGCA
CTCCACACAGGCTTGGGCGACGCCGCCAGTCCTGGTGCCACAGTACCTGG
CGAGCATACGGGAGCCGCGCGGGTGGTGGGGTGCGGGCGCGCTTCACGCA
GGATTTAATGTACCCTAGGGTAACCCAGAACTCTGCTAATACGGGCGCAC
GTCGGGGGCTGACCGCCACATAGCGTCGGAAGCTGGGATATATCTGCGTT
AGTTTTTGAACATTCCATGATTGTCTTGCGATTGCAGGGGATGAATAAAC
TGACGCTGCGCCAGCTTTGGGCACGATATCCTGACTAGAGTTTCCGACGC
GGGATAGTGTGAACATCACTCAATGCCTTCCTTCGGCACCCTGGGAGCGG
GGTGCGTCGACAAGCGTCAGAGTGCTGGTCTTGCTACTGCTGTTGTTTTT
TATATTGTTGGTGTTCTTATAAACGCGCATATGCCCCTCTGTCTGGCTGT
CTGTCTGTCTGTCTGTCCCTCTCTCGTTCATTCGGCCAGTCGGCAGTACG
TGACACCCGCCTACGCCGCTAAGGGTCCCGGCAACAACGTTGGCATCATG
TTCTTATGCGAAGCCGCTCTCGGCAAGGAGGCTAGCATCACCATCGATAA
CTCGAAGCTCACGAAGCCTCCTACG
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Coding sequence (CDS) from alignment at H-paniculata_contig6254:131..1355+

>mRNA_H-paniculata_contig6254.14011.1 ID=mRNA_H-paniculata_contig6254.14011.1|Name=mRNA_H-paniculata_contig6254.14011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig6254:131..1355+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCGGTGGTCGCGGCCATCGTGAAGAGCGGACTCCGCATCATGCCCCA
CTCTGGCGGCCGCGTGGGACGGGGTATCTACCTTGCCTCCGAGAACGCCA
AGAGGTACGTGGCGGTGGTCGCGGCCATCGTGAAGAGCGGACTCCGCATC
ATGCCCCACTCTGGCGGCCGCGTGGGACGGGGTATCTACCTTGCCTCCGA
GAACGCCAAGAGGTACTACGTGACACCCGCCTACGCCGCTAAGGGTCCCG
GCAACAACGTTGGCATCATGTTCTTATGCGAAGCCGCTCTCGGCAAGGAG
GCTAGCATCACCATCGATAACTCGAAGCTCACGAAGCCTCCTACGTACGT
GACACCCGCCTACGCCGCTAAGGGTCCCGGCAACAACGTTGGCATCATGT
TCTTATGCGAAGCCGCTCTCGGCAAGGAGGCTAGCATCACCATCGATAAC
TCGAAGCTCACGAAGCCTCCTACG
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