mRNA_H-paniculata_contig6213.13957.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6213.13957.1
Unique NamemRNA_H-paniculata_contig6213.13957.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 1.290e-65
Identity = 106/254 (41.73%), Postives = 156/254 (61.42%), Query Frame = 1
Query:    7 GGDATWRPDDEYNPETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALGVELLAYLDDLLL 768
            G    WRP+ E++P+ L+ V+ S ++ S AG+DG  FS L+ I++T  G++ F   + S W R    P+A PP+FW L+  S+L ALG+K  P+C+G T RR +A   VR+++ KLE++     Q GVAV+GG E + + A+   Q GH ++  DC+N  N+ KR AI+ +     P L   +   Y E PA  I  MD+GER+ I   +G+ QGDG+GP LFC  + PI+ K R ++D LGV L AY+DD+ L
Sbjct:   34 GSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVTGGVEQVAMDAQLVDQTGHWVVQTDCSNGLNTGKRTAIMAQAAKSVPDLVGCIARCY-ELPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISL 286          
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 1.890e-65
Identity = 105/254 (41.34%), Postives = 155/254 (61.02%), Query Frame = 1
Query:    7 GGDATWRPDDEYNPETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALGVELLAYLDDLLL 768
            G    WRP+ E++P+ L+ V+   ++ S AG+DG  FS L+ I++   G++ F   +   W R    P+A PP+FW L+  S+L ALG+K  P+C+G T RR +A   VR+++ KLE++     Q GVAV+GG E + + A+  HQ GH ++  DC+NAFN+ KR AI+ +     P L  ++   Y E PA  I  MD+G R+ I    G+ QGDG+GP LFC  + PI+ K R ++D LGV L AY+DD+ L
Sbjct:   79 GSAPRWRPETEFDPQVLLQVINRRSSNSGAGNDGQRFSHLKSIVNNKIGREEFSNAMSPLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLFCFILVPIILKLRAKYDHLGVCLKAYMDDISL 332          
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 2.360e-65
Identity = 109/254 (42.91%), Postives = 160/254 (62.99%), Query Frame = 1
Query:    7 GGDATWRPDDEYNPETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALGVELLAYLDDLLL 768
            G    WRP+ E++P+ L+ V+ S ++ S AG+DG  FS L+ I++T  G++ F   + S W R    P+A PP+FW L+  S+L ALG+K  P+C+G T RR +A   VR+++ KLE++     Q GVAV+GG E + + A+  HQ GH ++  DC+NAFN+ KR AI+ +     P L  ++   Y E PA  I  MD+GER+ I   +G+ QGDG+GP LFC  + PI+ K R ++D LGV L AY+DD+ L
Sbjct:  378 GSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 631          
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 8.770e-65
Identity = 103/240 (42.92%), Postives = 150/240 (62.50%), Query Frame = 1
Query:   49 ETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALGVELLAYLDDLLL 768
            + L+ V  S ++ S AG+DG  FS L+ I++T  G++ F   + S W R    P+A PP+FW L+  S+L ALG+K  P+C+G T RR +A   VR+++ KLE++     Q GVAV+GG E + + A+  HQ GH ++  DC+NAFN+ KR AI+ +     P L  ++   Y E PA  I  MD+GER+ I   +G+ QGDG+GP LFC  + PI+ K R ++D LGV L AY+DD+ L
Sbjct:    3 QVLLQVTNSRSSNSGAGNDGQRFSHLKSIVNTKTGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKRSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISL 242          
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 1.520e-64
Identity = 109/254 (42.91%), Postives = 160/254 (62.99%), Query Frame = 1
Query:    7 GGDATWRPDDEYNPETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALGVELLAYLDDLLL 768
            G    WRP+ E++P+ L+ V+ S ++ S AG+DG  FS L+ I++T  G++ F   + S W R    P+A PP+FW L+  S+L ALG+K  P+C+G T RR +A   VR+++ KLE++     Q GVAV+GG E + + A+  HQ GH ++  DC+NAFN+ KR AI+ +     P L  ++   Y E PA  I  MD+GER+ I   +G+ QGDG+GP LFC  + PI+ K R ++D LGV L AY+DD+ L
Sbjct:  357 GSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 610          
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 1.820e-64
Identity = 108/254 (42.52%), Postives = 158/254 (62.20%), Query Frame = 1
Query:    7 GGDATWRPDDEYNPETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALGVELLAYLDDLLL 768
            G    WRP+ E++P+ L+ V+   ++ S AG+DG  FS L+ I++T  G++ F   + S W R  + P A PP+FW L   S+L ALG+K  P+C+G T RR +A   VR+++ KLE++     Q GVAV+GG E + + A+  HQ GH ++  DC+NAFN+ KR AI+ +     P L  ++   Y E PA  I  MD+GER+ I   +G+ QGDG+GP LFC  + PI+ K R ++D LGV L AY+DD+ L
Sbjct:  356 GSAPRWRPETEFDPQVLLQVVNRRSSNSGAGNDGPRFSHLKSIVNTKIGREEFSNAMSSLWRRLIKDPHAFPPEFWTLLKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 609          
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 4.830e-62
Identity = 104/258 (40.31%), Postives = 161/258 (62.40%), Query Frame = 1
Query:    7 GGDATWRPDDEYNPETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALGVELLAYLDDLLLAMGE 780
            G    WRP++E++P+ LI V+ S ++ S AG+DG  FS L+ I +T  G++ F   + S W R    P+  PP+FW L+  S+L ALG+K  P+C+G T RR +A   VRQ++ KLE++     Q GVAV+GG E + + A+  HQ G+ +I  DC+NAFN+ KR AI+ +     P L  ++   Y E PA  + +MD+GER+ +   +G+ QGDG+GP LF + + PI+ K ++++  LGV   AY+DD+ L + +
Sbjct:  527 GSAPRWRPEEEFDPQVLIEVINSRSSNSGAGNDGQRFSHLKSITNTKIGREDFCGAMSSLWRRLVNDPNTFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVRQWKPKLEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQDKYKPLGVAFKAYMDDITLHLKD 784          
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 4.130e-60
Identity = 102/239 (42.68%), Postives = 149/239 (62.34%), Query Frame = 1
Query:   49 ETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALGVELLAYLDDLL 765
            E    V+ S ++ S AG+DG  FS L+ I++T  G++ F   + S W R    P+A PP+FW L+  S+L ALG+K  P+C+G T RR +A   VR+++ KLE++     Q GVAV+GG E + + A+  HQ GH ++  DC+NAFN+ KR AI+ +     P L  ++   Y E PA  I  MD+GER+ I   +G+ QGDG+GP LFC  + PI+ K R ++D LGV L AY+DD++
Sbjct:    2 EARNRVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDII 240          
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 1.680e-59
Identity = 100/242 (41.32%), Postives = 148/242 (61.16%), Query Frame = 1
Query:    7 GGDATWRPDDEYNPETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALG 732
            G    WRP+ E++P  L+ V+ S ++   AG+DG  FS L+ I++T  G++ F   + S W R    P+A PP+FW L+  S+L ALG+K  P+C+G T RR +A   VR+++ KLE++     Q GVAV+GG E + + A+  HQ GH ++  DC+NAFN+ KR AI+ +     P L  ++   Y E PA  I  MD+GE + I   +G+ QGDG+GP LFC  + PI+ K R ++D LG
Sbjct:  364 GSAPRWRPETEFDPRVLLQVINSRSSNFGAGNDGRRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKLSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGEHRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLG 605          
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 4.560e-59
Identity = 99/242 (40.91%), Postives = 148/242 (61.16%), Query Frame = 1
Query:    7 GGDATWRPDDEYNPETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALG 732
            G    WRP+ E++P+ L+ V+ S ++ S AG+DG  FS L+ I++T  G++ F   + S W R    P+A PP+FW L+  S+L ALG+K  P+C+G T RR +A   VR+++ KLE++     Q GVA +GG E + + A+  HQ GH ++  DC+NAFN  KR A + +     P L  ++   Y E PA  I  MD+GER+ I   +G+ QGDG+GP LFC  + PI+ K R ++D +G
Sbjct:  365 GSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAAAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNMGKRTATMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHIG 606          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT19_9PHAE1.290e-6541.73Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KR59_9PHAE1.890e-6541.34Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JI32_9PHAE2.360e-6542.91Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L4Y4_9PHAE8.770e-6542.92Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE1.520e-6442.91Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKQ2_9PHAE1.820e-6442.52Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JH58_9PHAE4.830e-6240.31Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE4.130e-6042.68Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KA96_9PHAE1.680e-5941.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K195_9PHAE4.560e-5940.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6213contigH-paniculata_contig6213:1691..2470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue2.3e-14
Seed eggNOG ortholog400682.PAC_15702057
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size780
Cds size780
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.5506608-CDS-H-paniculata_contig6213:1690..24701622930707.5506608-CDS-H-paniculata_contig6213:1690..2470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6213 1691..2470 +
1691481416.077178-CDS-H-paniculata_contig6213:1690..24701691481416.077178-CDS-H-paniculata_contig6213:1690..2470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6213 1691..2470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6213.13957.1prot_H-paniculata_contig6213.13957.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6213 1691..2470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6213.13957.1

>prot_H-paniculata_contig6213.13957.1 ID=prot_H-paniculata_contig6213.13957.1|Name=mRNA_H-paniculata_contig6213.13957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=260bp
AAGGDATWRPDDEYNPETLIAVMKSENALSAAGSDGLHFSRLQCILSTSA
GKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGS
TMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLG
HSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQM
DTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALGVELLAY
LDDLLLAMGE
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mRNA from alignment at H-paniculata_contig6213:1691..2470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6213.13957.1 ID=mRNA_H-paniculata_contig6213.13957.1|Name=mRNA_H-paniculata_contig6213.13957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=780bp|location=Sequence derived from alignment at H-paniculata_contig6213:1691..2470+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCGGGCGGAGATGCCACCTGGAGGCCAGACGACGAGTATAATCCCGA AACGCTGATAGCGGTTATGAAGTCGGAGAACGCCCTGTCCGCGGCGGGTA GCGATGGCCTACATTTCTCTCGCCTGCAGTGCATCCTGAGCACCTCGGCG GGTAAGAAAGGTTTTGACCTCATGGTCGGGTCTTTCTGGTGGCGCTCCAA GGAACAACCCGACGCCGTCCCGCCAGACTTCTGGGAGTTGTTCCTCCCAA GCAACCTCACGGCGCTGGGGAAGAAGGGCCACCCGATCTGCGTGGGATCT ACGATGCGGCGTACTTTGGCTACTGAGGTGGTCAGGCAGTACAGGCTTAA ACTGGAGGATGTTAAGTTGTCGGAGCGGCAAAACGGGGTAGCGGTCTCGG GTGGCGCGGAGCTCATGGGCCTCCGCGCGAAAACACATCACCAACTGGGA CATTCGCTTATCGCCCTCGACTGTACCAATGCATTCAACTCCATCAAGCG AGTGGCGATCTTGGAAGAAGTGGTAGTCCGCACCCCAGGACTGACACCTT TCGTACCCGAACGCTATGGGGAGAAGCCGGCAGGCATCATTTCCCAGATG GACACCGGTGAACGCAAGAAAATCTCTTCGAACACGGGAATCCACCAGGG CGACGGACTGGGACCTGCCCTCTTCTGTATGCCCGTGGAACCGATCTTGC GCAAGTGCCGAGAACAATTCGACGCTCTAGGGGTGGAGCTATTGGCCTAC CTGGACGATCTGCTGCTGGCAATGGGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig6213:1691..2470+

>mRNA_H-paniculata_contig6213.13957.1 ID=mRNA_H-paniculata_contig6213.13957.1|Name=mRNA_H-paniculata_contig6213.13957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at H-paniculata_contig6213:1691..2470+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCGGGCGGAGATGCCACCTGGAGGCCAGACGACGAGTATAATCCCGA
AACGCTGATAGCGGTTATGAAGTCGGAGAACGCCCTGTCCGCGGCGGGTA
GCGATGGCCTACATTTCTCTCGCCTGCAGTGCATCCTGAGCACCTCGGCG
GGTAAGAAAGGTTTTGACCTCATGGTCGGGTCTTTCTGGTGGCGCTCCAA
GGAACAACCCGACGCCGTCCCGCCAGACTTCTGGGAGTTGTTCCTCCCAA
GCAACCTCACGGCGCTGGGGAAGAAGGGCCACCCGATCTGCGTGGGATCT
ACGATGCGGCGTACTTTGGCTACTGAGGTGGTCAGGCAGTACAGGCTTAA
ACTGGAGGATGTTAAGTTGTCGGAGCGGCAAAACGGGGTAGCGGTCTCGG
GTGGCGCGGAGCTCATGGGCCTCCGCGCGAAAACACATCACCAACTGGGA
CATTCGCTTATCGCCCTCGACTGTACCAATGCATTCAACTCCATCAAGCG
AGTGGCGATCTTGGAAGAAGTGGTAGTCCGCACCCCAGGACTGACACCTT
TCGTACCCGAACGCTATGGGGAGAAGCCGGCAGGCATCATTTCCCAGATG
GACACCGGTGAACGCAAGAAAATCTCTTCGAACACGGGAATCCACCAGGG
CGACGGACTGGGACCTGCCCTCTTCTGTATGCCCGTGGAACCGATCTTGC
GCAAGTGCCGAGAACAATTCGACGCTCTAGGGGTGGAGCTATTGGCCTAC
CTGGACGATCTGCTGCTGGCAATGGGGGAGGCCGCGGGCGGAGATGCCAC
CTGGAGGCCAGACGACGAGTATAATCCCGAAACGCTGATAGCGGTTATGA
AGTCGGAGAACGCCCTGTCCGCGGCGGGTAGCGATGGCCTACATTTCTCT
CGCCTGCAGTGCATCCTGAGCACCTCGGCGGGTAAGAAAGGTTTTGACCT
CATGGTCGGGTCTTTCTGGTGGCGCTCCAAGGAACAACCCGACGCCGTCC
CGCCAGACTTCTGGGAGTTGTTCCTCCCAAGCAACCTCACGGCGCTGGGG
AAGAAGGGCCACCCGATCTGCGTGGGATCTACGATGCGGCGTACTTTGGC
TACTGAGGTGGTCAGGCAGTACAGGCTTAAACTGGAGGATGTTAAGTTGT
CGGAGCGGCAAAACGGGGTAGCGGTCTCGGGTGGCGCGGAGCTCATGGGC
CTCCGCGCGAAAACACATCACCAACTGGGACATTCGCTTATCGCCCTCGA
CTGTACCAATGCATTCAACTCCATCAAGCGAGTGGCGATCTTGGAAGAAG
TGGTAGTCCGCACCCCAGGACTGACACCTTTCGTACCCGAACGCTATGGG
GAGAAGCCGGCAGGCATCATTTCCCAGATGGACACCGGTGAACGCAAGAA
AATCTCTTCGAACACGGGAATCCACCAGGGCGACGGACTGGGACCTGCCC
TCTTCTGTATGCCCGTGGAACCGATCTTGCGCAAGTGCCGAGAACAATTC
GACGCTCTAGGGGTGGAGCTATTGGCCTACCTGGACGATCTGCTGCTGGC
AATGGGGGAG
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