mRNA_H-paniculata_contig62117.13955.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62117.13955.1
Unique NamemRNA_H-paniculata_contig62117.13955.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.210e-32
Identity = 61/130 (46.92%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   10 PMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
            PMP+LE   + ++ A+ + +LD+LQGYW MPL P+ QEIFTM+   G+Y+P R+PQGVLNATSY+QGTM  +L  L    C VWVDDI  W    ++L+  L ++L R +  G++ AAHK   +   ++W
Sbjct:  731 PMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDLN---CIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFYTTSVKW 857          
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 9.180e-31
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 1
Query:   13 MPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
            MPN E     ++ A  + +LDLLQ YWQ PL P+ QEIFT+ T  G+YTP R+PQG+LNATSYFQ T+  +L GL    C VWVDD+  W     +L+  L ++L+RL+  G+Y AAHK   F   + W
Sbjct:  830 MPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGLN---CFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFFETSITW 955          
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 4.500e-28
Identity = 64/130 (49.23%), Postives = 85/130 (65.38%), Query Frame = 1
Query:   13 MPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQ-ELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
            +P+ E     + GA+ F  LDLLQGYWQMPL    +EIF++ T +G++ PTR+PQ VLNAT YFQ  M ++L GL    C VWVDD  IW G+ + +L+  L  +L RLQ  GI+AAAHK   F  ++RW
Sbjct:  483 VPSQEVQVSMLQGATCFGKLDLLQGYWQMPLAESAREIFSIATPEGLFEPTRVPQDVLNATGYFQAVMTEILQGLN---CAVWVDD-DIWWGIDETDLLNTLDEILWRLQDNGIFAAAHKCPFFDTKIRW 608          
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: A0A6G0SJ18_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0SJ18_9STRA)

HSP 1 Score: 108 bits (269), Expect = 4.340e-27
Identity = 54/130 (41.54%), Postives = 75/130 (57.69%), Query Frame = 1
Query:   10 PMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
            PMP LE +   + GA V   LD  +GYWQ+PL    QE+FT +T +G+YTPTR+P G  +A +Y QG + ++  GLLG     W+DDI  +A    EL+  L  VL R +  G+   A K + F  E+ W
Sbjct:   18 PMPVLEVVLGALEGAKVVFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDILGYAESDDELLPLLDQVLARCEAYGLKLHAKKCEFFEIEVMW 147          
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: A0A2P4WWJ1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWJ1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.820e-26
Identity = 58/135 (42.96%), Postives = 81/135 (60.00%), Query Frame = 1
Query:    1 EAMP--MPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
            EAMP  MP LE +   + GA VF  LD  +GYWQ+PL    QE+FT +T +G+YTPTR+P G  +A +Y QG + ++   LLG    VW+DDI  +A   +EL++ L  VL R +  G+   A K   F  E++W
Sbjct:  523 EAMPWPMPVLEVVLSALEGAQVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILVWLDDILGYAESEEELLQLLDQVLARCEAYGLKLHAKKCDFFEIEVKW 657          
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: A0A6G0NWQ3_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NWQ3_9STRA)

HSP 1 Score: 108 bits (270), Expect = 4.160e-26
Identity = 52/130 (40.00%), Postives = 76/130 (58.46%), Query Frame = 1
Query:   10 PMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
            P+P LE +   + GA V   +D  +GYWQ+PL    QE+FT +T +G+YTPTR+P G  +A +Y QG + ++  GLLG     W+DDI  +A    EL+  L  VL R +  G+   A K + F  E++W
Sbjct:  134 PIPVLEVVLGALEGAKVVFAMDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDIVGYAESEDELLTMLDQVLARCEAYGLKLHAKKCEFFEIEVKW 263          
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: A0A6A3GVC4_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3GVC4_9STRA)

HSP 1 Score: 110 bits (274), Expect = 9.650e-26
Identity = 52/130 (40.00%), Postives = 77/130 (59.23%), Query Frame = 1
Query:   10 PMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
            PMP L+ +  G+ GA VF  LD  +GYWQ+PL P  QE+++ VT +G+YTPTR+P G  +A +Y QG + ++   L+G     W+DDI  +A     L+  L  VL R +  G+   A K + F  E++W
Sbjct:   87 PMPVLDVVLGGLEGARVFFVLDWFRGYWQLPLHPDSQELYSFVTHRGIYTPTRVPMGATDAVAYCQGVVDEIFGDLIGDGILAWLDDILGYAENESALLELLDKVLSRCEAYGLKLHAKKCQFFATEVKW 216          
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: A0A6A3GM82_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GM82_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.120e-25
Identity = 54/130 (41.54%), Postives = 77/130 (59.23%), Query Frame = 1
Query:   10 PMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
            PMP LE +   + GA V   LD  +GYWQ+PL    QE+FT +T +G+YTPTR+P G  +A +Y QG + ++   LLG     W+DDI  +A    EL++ L  VL R +V G+   A K + F  E++W
Sbjct:  169 PMPVLEVVLGALEGAKVVFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILAWLDDILGYAESEDELLQLLDQVLARCEVYGLKLHAKKCEFFEIEVKW 298          
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: H3H555_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H555_PHYRM)

HSP 1 Score: 110 bits (276), Expect = 1.170e-25
Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 1
Query:   10 PMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
            PMP LE +   + GA VF  LD  +GYWQ+PL P  QEI++ VT +G+YTPTR+P G  +A +Y QG + ++   LLG     W+DDI  +A     L+  L  VLER +  G+   A K + F  E++W
Sbjct:   18 PMPVLEVVIGELEGAKVFFVLDWFRGYWQLPLHPDSQEIYSFVTHRGIYTPTRVPMGATDAVAYCQGVVEEIFGDLLGTCILAWLDDILGYAEDEASLLEVLDKVLERCEKFGLKLHAKKCQFFATEVKW 147          
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Match: H3H656_PHYRM (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H656_PHYRM)

HSP 1 Score: 110 bits (276), Expect = 1.170e-25
Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 1
Query:   10 PMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVYTPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*VWVDDIGIWAGMWQELMRRLQVVLERLQVRGIYAAAHKAKLFRREMRW 399
            PMP LE +   + GA VF  LD  +GYWQ+PL P  QEI++ VT +G+YTPTR+P G  +A +Y QG + ++   LLG     W+DDI  +A     L+  L  VLER +  G+   A K + F  E++W
Sbjct:  744 PMPVLEVVIGELEGAKVFFVLDWFRGYWQLPLHPDSQEIYSFVTHRGIYTPTRVPMGATDAVAYCQGVVEEIFGDLLGTCILAWLDDILGYAEDEASLLEVLDKVLERCEKFGLKLHAKKCQFFATEVKW 873          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62117.13955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7F6_9PHAE2.210e-3246.92Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE9.180e-3148.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L028_9PHAE4.500e-2849.23CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6G0SJ18_9STRA4.340e-2741.54Reverse transcriptase domain-containing protein n=... [more]
A0A2P4WWJ1_9STRA1.820e-2642.96Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A6G0NWQ3_9STRA4.160e-2640.00Reverse transcriptase domain-containing protein n=... [more]
A0A6A3GVC4_9STRA9.650e-2640.00Reverse transcriptase domain-containing protein n=... [more]
A0A6A3GM82_9STRA1.120e-2541.54Reverse transcriptase domain-containing protein (F... [more]
H3H555_PHYRM1.170e-2542.31Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
H3H656_PHYRM1.170e-2542.31Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62117contigH-paniculata_contig62117:362..760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue6.8e-16
Seed eggNOG ortholog164328.Phyra85588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size399
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62117.13955.1prot_H-paniculata_contig62117.13955.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62117 506..754 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.3404257-UTR-H-paniculata_contig62117:361..5051622930707.3404257-UTR-H-paniculata_contig62117:361..505Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62117 362..505 -
1691481415.9951324-UTR-H-paniculata_contig62117:361..5051691481415.9951324-UTR-H-paniculata_contig62117:361..505Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62117 362..505 -
1622930707.370455-UTR-H-paniculata_contig62117:754..7601622930707.370455-UTR-H-paniculata_contig62117:754..760Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62117 755..760 -
1691481416.0147765-UTR-H-paniculata_contig62117:754..7601691481416.0147765-UTR-H-paniculata_contig62117:754..760Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62117 755..760 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.3565993-CDS-H-paniculata_contig62117:505..7541622930707.3565993-CDS-H-paniculata_contig62117:505..754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62117 506..754 -
1691481416.0058749-CDS-H-paniculata_contig62117:505..7541691481416.0058749-CDS-H-paniculata_contig62117:505..754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62117 506..754 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62117.13955.1

>prot_H-paniculata_contig62117.13955.1 ID=prot_H-paniculata_contig62117.13955.1|Name=mRNA_H-paniculata_contig62117.13955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQGQEIFTMVTAKGVY
TPTRLPQGVLNATSYFQGTMGDVLAGLLGKIC*
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mRNA from alignment at H-paniculata_contig62117:362..760-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62117.13955.1 ID=mRNA_H-paniculata_contig62117.13955.1|Name=mRNA_H-paniculata_contig62117.13955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=399bp|location=Sequence derived from alignment at H-paniculata_contig62117:362..760- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGCGATGCCGATGCCAAACTTGGAGGAGATCGGGCGAGGCATGGCGGG AGCCAGTGTGTTCTGCACGCTGGATCTGCTGCAGGGCTACTGGCAGATGC CCCTCGATCCTCAAGGGCAAGAGATCTTCACGATGGTCACGGCCAAGGGG GTATACACGCCTACCAGACTTCCTCAGGGAGTGCTAAATGCGACTAGTTA TTTCCAGGGGACGATGGGAGACGTACTGGCAGGCTTGCTCGGAAAAATAT GTTAAGTATGGGTTGATGACATAGGAATATGGGCCGGTATGTGGCAGGAA CTGATGCGGAGACTGCAGGTGGTGCTGGAGCGGCTACAGGTACGCGGTAT TTATGCCGCGGCTCACAAGGCGAAGCTGTTTCGGCGGGAGATGCGCTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig62117:362..760-

>mRNA_H-paniculata_contig62117.13955.1 ID=mRNA_H-paniculata_contig62117.13955.1|Name=mRNA_H-paniculata_contig62117.13955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig62117:362..760- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGATGCCAAACTTGGAGGAGATCGGGCGAGGCATGGCGGGAGCCAG
TGTGTTCTGCACGCTGGATCTGCTGCAGGGCTACTGGCAGATGCCCCTCG
ATCCTCAAGGGCAAGAGATCTTCACGATGGTCACGGCCAAGGGGGTATAC
ACGCCTACCAGACTTCCTCAGGGAGTGCTAAATGCGACTAGTTATTTCCA
GGGGACGATGGGAGACGTACTGGCAGGCTTGCTCGGAAAAATATGTTAAA
TGCCGATGCCAAACTTGGAGGAGATCGGGCGAGGCATGGCGGGAGCCAGT
GTGTTCTGCACGCTGGATCTGCTGCAGGGCTACTGGCAGATGCCCCTCGA
TCCTCAAGGGCAAGAGATCTTCACGATGGTCACGGCCAAGGGGGTATACA
CGCCTACCAGACTTCCTCAGGGAGTGCTAAATGCGACTAGTTATTTCCAG
GGGACGATGGGAGACGTACTGGCAGGCTTGCTCGGAAAAATATGTTAA
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