mRNA_H-paniculata_contig6177.13902.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6177.13902.1
Unique NamemRNA_H-paniculata_contig6177.13902.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6177.13902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6177contigH-paniculata_contig6177:576..4451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size373
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6177.13902.1prot_H-paniculata_contig6177.13902.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6177 576..4450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930698.710897-CDS-H-paniculata_contig6177:575..7281622930698.710897-CDS-H-paniculata_contig6177:575..728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6177 576..728 +
1691481411.6802738-CDS-H-paniculata_contig6177:575..7281691481411.6802738-CDS-H-paniculata_contig6177:575..728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6177 576..728 +
1622930698.7243261-CDS-H-paniculata_contig6177:2968..30821622930698.7243261-CDS-H-paniculata_contig6177:2968..3082Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6177 2969..3082 +
1691481411.6884854-CDS-H-paniculata_contig6177:2968..30821691481411.6884854-CDS-H-paniculata_contig6177:2968..3082Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6177 2969..3082 +
1622930698.7380657-CDS-H-paniculata_contig6177:4345..44501622930698.7380657-CDS-H-paniculata_contig6177:4345..4450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6177 4346..4450 +
1691481411.698939-CDS-H-paniculata_contig6177:4345..44501691481411.698939-CDS-H-paniculata_contig6177:4345..4450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6177 4346..4450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6177.13902.1

>prot_H-paniculata_contig6177.13902.1 ID=prot_H-paniculata_contig6177.13902.1|Name=mRNA_H-paniculata_contig6177.13902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
SQDKATLQSALAGLREQLRARDEEKASQTQSLAAMGAVSQASSQRLTAVE
KELEKTRETLSAKKAALDKAWGEIKELKRSLTDVKASKQALEKSLEDGGK
ARAATESELLQWQSREAALVLEQA
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mRNA from alignment at H-paniculata_contig6177:576..4451+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6177.13902.1 ID=mRNA_H-paniculata_contig6177.13902.1|Name=mRNA_H-paniculata_contig6177.13902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3876bp|location=Sequence derived from alignment at H-paniculata_contig6177:576..4451+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCAGGATAAAGCGACCCTGCAGTCGGCTCTAGCCGGCCTGCGAGAGCA
GCTGCGCGCGAGAGATGAGGAGAAGGCTTCCCAGACGCAGAGCCTGGCCG
CTATGGGGGCAGTCAGCCAGGCGTCCTCGCAGCGCCTCACTGCGGTTGAA
AAGGTGGATGGGGATGGAGGGGCGGGGGGGGGGGGGGGTATGGTAGCATA
ACCTAGAACTGGATATTCTCGCGCCTCTTCGATCACGTACGGCATGGACA
GCGACAACGTTCACAAAGTTCTGTCACTGTATCACTCACATGTGTACTGC
AGGCAAAACATGAAATAGTTGTTATATGAACAACTGACATACTGTAATTA
AATACAACCCCTCCATTTTTGCTGATCAAATCTCTCATTACTGCTGTAAA
TTGATCGGTGCCACGGTTAAGTTTAACTATAGCTCTGAAGTCGATCTGAT
AACTCCATTGTACCCCCATGTTGAAGTTATGCAGATTTCTTCACTCCGTA
GTTGTATACACTTCACAGCAAAATTAGATGATGACGAATGAGGTGTGTGT
GTTTGTGTGTGAGTGGTGGCGTTTTTTTTTTTTTACACATATGTGTCCGA
CGAAGCGCCTTACTTTCAAGCTTTGCTCCTGTGTCATGTTTTTTTTTTTT
TTCAATATATTTAATTTTAGAGATATTGGGCAGGCGTGGGCAAATAAGGG
CAGAAGGTTTATTTTTGCGTTCGATAAGTATCTCAACATACGATATTTTA
AGTATTCTAGTTATACATACATGCTGAGGGCATGTAGCCGAAAGTAGTAG
GTACGAGTCGGACTACGGTACGGCGGGCGGGGGCTGGACTGGCTTGAGCC
AATGTGTTTCACGTTTTGAAGCTCTTTGCGGAGCGATTAGGCAGAAAAGT
CGTCTTTGAACAGTAATATAATTCCAGATCGCGCCTTGTGCACCTTTCGG
GATGATACGTGAACGCATACTATAGAGTAGGTTTTGATTTGAATTTGTTT
CAGCGGCTTTGCGAGCGATGCTTGTTAAAGCGTCCCCCCCTCCCCCCCCT
CCTCCTCGTACCGTGTCCCGACACTTGCGTACTTGGTACAAGTGGGAATT
GTCTGGCTAACCAACCTATTTTTTATCCCTTTTTGTAATCTATACCGACT
AATGATTGATTAACCCTTCCAAACGCGTAGTACTCTATACATGCTGAGGT
TGTGTTGCCTTCCCTCAGCCTTTCGATTAATGATGATTCCATAGTGACTG
AAGGGAGGAGGATACAGGGAACCCAACTTGGCCAAAATCACGTGCAGATA
TTCTGGAATGTGGTACAGTACTAGCCTAACGAGAAAAAAATGTTATTTTG
GGTGAAGCTCAAAACCTTAGTTTGGCGAAAGTCACGAGCAGTGCTTATTT
TTTTACACTTTTACACGTAGGAATTAGTATAGTACCACACTTTGATCCCC
GTTCTTTACACCAGATGTCTATGGGTGACTCTAAAAGTGGGCCTCAAAAT
CTTCAATTGGCATCGGCGCCTTCGAGACGCGGAATGTTTTCGAAACATGG
CTAAAGGTTAATATCTGATTTCCTGTTGTAAATCAGCAAGGTTTTTAGCG
TTCAAAAGGAGTGCCCAAAAGCAGATCTGGGTGCGCCCCTAAGATAGACC
TGCGATGTGTTGCCTTCAGAGATCTGATGTAACCTGTTTTCTATTATACG
GAGAATATGTCGTTTATATACATGTCAGAAGCGCAGATCTCAGAGGGCTC
CTTCCCGAAAGAGTAAACTAACTTAGCCCTTTAGGAACTGGACATTGTGA
TGGCCAAAAGCGAGATTCGAGATTTGCCTACGATATGTCCGAAATGTTGA
TGAATGCCTCGACAGAATGCCATAACCAGCTCTCGATAGCTGGTGAGCCA
GATTTGTTACGGCCGTTTGCGTGATTTTATCGTGGGTGCAGTGTTGGAGC
GAGAACGGACAAACGCCGACTTTTTGCGTAACGGCCAAATGATAAACGAG
CTCTTGACAGCTGATGAGTGGATTAGAAGATCTCAAGGGTAAAGCCTCCT
TTCCTTTGCTCCCTTTATATGGTCATGAGGAACATTGGAGGAGATAATGA
GGGGCTGCACGGTCCGCTTGATCGTTATTTTACGGGGTGGGGAGTGGAGT
GGTCCGTCTTTTTTGCTTCTAGTTGTGCGTATTTATTGTGGAATAATGAC
GGTAGTTAGGAGATGGAAATATACTGTTTTAATTGTAGCGAGATGTACAT
TTTACAAACGATTTTCACGTGATTTGTTTTTCAAGGGTTTGTATATTTTT
TTATTTCACCTGTTTTGTGTTCTACTTTATATCGTTTTTTTCTACCGTTA
TTCTTCTAATATTGGTGACACGCTTATCACGTACGTCTTTCAGGAGTTGG
AGAAGACCCGGGAGACGCTGTCTGCCAAGAAGGCTGCGCTGGACAAGGCC
TGGGGGGAGATCAAAGAGCTCAAACGGAGCCTGACAGATGTCAAAGCTAG
CAAACAGGTTGAAATGTTGCGTGTTGATCCCCGTCTGACTGCAAAAGTTC
CGAGTATTGGAAGAACGTCTGTCGAAGTAGCTTCGTGCTGCTTCTTGCGT
GCTGAGGGCATGGGCCACGCATGGCCGTCGCAACGCAAAACAAAACAACC
CGAGACCTACCTGTGTACCACCGAGCAAACGGGGGAGATGGTACAGGTCA
TGCTTGTGCGCCACGATGACGTACCGCAGCGCTCTCCCCCGTTTGCTCGC
ATGAAGATTCGTTTTTCAGTATTTACCCGGGTGCAGATATCAAACCTATG
GCACCGGACTGTGTCCGATCCCTGCACAACCCGACCCGAAAATAGGCTAA
AACCCGTTCGGAATCGTGCTGCGACAAACGCCCATGATATGATAAGGGGT
TTAGGGAGCTAGCTCTACATACAGTTCAGATGTTCCTGTGATTATTACAG
ACACGTTGAAACAGACAGTAGTTGGCATCGTTTGGCGTTCCACGACGACA
GAAGGTGACGCTCGGTTGAACCGCGAAGCACAAACCGCATCATCGCATCA
TGAGTGAACGACTGTATAAGGTGTGTGTGCCGCACAAGGCCGCACGCCAG
GACGCTTAATAAACAACACCACGATGGCTCTCAGGGAGCTGTTTTGACTA
CGAAATGCAGAAAATATGTGTCGCACAACTGCATCTCTTTGTGTCGTTGC
TGAAAGCACTGGCCGCAGTCATAATAGTAAGGTACTGAGGAATACCATGC
GTTACCGTCGCTCTCGTCCTCGCTGTCGATACGACGCGTCTGTTGCACCC
ACAAAACATAGCCAGACCAAAAGAACGTCGCCCCAAACAAGCGCAGCAGC
CCAAAAATGATTTGCGCGTTTTACACGAGCCTCAACCGTCGTCGGGATCT
TGTATAATTGGCCTGACCCTATCCTATTCGTGTACAATCGGTTGCCGTAC
TCCAGCCCTACGAAGGCGGGAGCCACTCCCTCCTGCCCCCCTTTTTTGAT
CTTTTTCGAGCTCCGGTCCCGTAGTGGTTGAAAACGCTTTCCGAAACGAA
GACTACCTTCCCCTATCAGTGAAAAAGGATTTATTTTGTTTTGTTTTCGT
TTGTTATGACTCTTTTTCTTTAAACCGTAACCGTATATAAGCAACCTGGG
CTGACCGACTGGAGCGCATTTCTTAGAAGTTATTTGCGGTGCTGTTACTA
CTGTCATTTTTTTGCTTTTTGCTTTTTGCATTTTGGGGATTTAACTTCGT
TGGATATCGATCAACTACAGGCCCTGGAAAAATCTTTGGAAGATGGAGGA
AAGGCTAGAGCGGCCACGGAGTCTGAGCTGCTGCAGTGGCAATCGAGAGA
AGCTGCCCTGGTTCTCGAGCAGGCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig6177:576..4451+

>mRNA_H-paniculata_contig6177.13902.1 ID=mRNA_H-paniculata_contig6177.13902.1|Name=mRNA_H-paniculata_contig6177.13902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig6177:576..4451+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCAGGATAAAGCGACCCTGCAGTCGGCTCTAGCCGGCCTGCGAGAGCA
GCTGCGCGCGAGAGATGAGGAGAAGGCTTCCCAGACGCAGAGCCTGGCCG
CTATGGGGGCAGTCAGCCAGGCGTCCTCGCAGCGCCTCACTGCGGTTGAA
AAGTCCCAGGATAAAGCGACCCTGCAGTCGGCTCTAGCCGGCCTGCGAGA
GCAGCTGCGCGCGAGAGATGAGGAGAAGGCTTCCCAGACGCAGAGCCTGG
CCGCTATGGGGGCAGTCAGCCAGGCGTCCTCGCAGCGCCTCACTGCGGTT
GAAAAGGAGTTGGAGAAGACCCGGGAGACGCTGTCTGCCAAGAAGGCTGC
GCTGGACAAGGCCTGGGGGGAGATCAAAGAGCTCAAACGGAGCCTGACAG
ATGTCAAAGCTAGCAAACAGGAGTTGGAGAAGACCCGGGAGACGCTGTCT
GCCAAGAAGGCTGCGCTGGACAAGGCCTGGGGGGAGATCAAAGAGCTCAA
ACGGAGCCTGACAGATGTCAAAGCTAGCAAACAGGCCCTGGAAAAATCTT
TGGAAGATGGAGGAAAGGCTAGAGCGGCCACGGAGTCTGAGCTGCTGCAG
TGGCAATCGAGAGAAGCTGCCCTGGTTCTCGAGCAGGCAGCCCTGGAAAA
ATCTTTGGAAGATGGAGGAAAGGCTAGAGCGGCCACGGAGTCTGAGCTGC
TGCAGTGGCAATCGAGAGAAGCTGCCCTGGTTCTCGAGCAGGCA
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