mRNA_H-paniculata_contig61401.13850.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig61401.13850.1
Unique NamemRNA_H-paniculata_contig61401.13850.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig61401.13850.1 vs. uniprot
Match: A0A800KL24_9BACT (Uncharacterized protein n=3 Tax=cellular organisms TaxID=131567 RepID=A0A800KL24_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 7.820e-6
Identity = 21/42 (50.00%), Postives = 27/42 (64.29%), Query Frame = 1 
Query:    1 LFSNIFNGYDHQAFSVVEPTCIDNYFSHVHEIGHNLGCLHDR 126
            L +N+  G+   AFSV   +C   Y+S  HEIGHN+GC HDR
Sbjct:  284 LMTNVSQGFASSAFSVTLDSCSTGYYSFGHEIGHNMGCTHDR 325
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BLAST of mRNA_H-paniculata_contig61401.13850.1 vs. uniprot
Match: A0A7S1FW70_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FW70_9STRA)

HSP 1 Score: 46.6 bits (109), Expect = 9.930e-5
Identity = 20/38 (52.63%), Postives = 24/38 (63.16%), Query Frame = 1 
Query:   13 IFNGYDHQAFSVVEPTCIDNYFSHVHEIGHNLGCLHDR 126
            +F+GY     +VV   C   YFS  HEIGHNLGC H+R
Sbjct:   35 MFSGYSSLGMNVVNHVCATGYFSFGHEIGHNLGCEHNR 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61401.13850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A800KL24_9BACT7.820e-650.00Uncharacterized protein n=3 Tax=cellular organisms... [more]
A0A7S1FW70_9STRA9.930e-552.63Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig61401contigH-paniculata_contig61401:519..650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930692.1792152-CDS-H-paniculata_contig61401:518..6501622930692.1792152-CDS-H-paniculata_contig61401:518..650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61401 519..650 -
1691481408.6530943-CDS-H-paniculata_contig61401:518..6501691481408.6530943-CDS-H-paniculata_contig61401:518..650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61401 519..650 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig61401.13850.1prot_H-paniculata_contig61401.13850.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig61401 519..650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig61401.13850.1

>prot_H-paniculata_contig61401.13850.1 ID=prot_H-paniculata_contig61401.13850.1|Name=mRNA_H-paniculata_contig61401.13850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
LFSNIFNGYDHQAFSVVEPTCIDNYFSHVHEIGHNLGCLHDRGD
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mRNA from alignment at H-paniculata_contig61401:519..650-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig61401.13850.1 ID=mRNA_H-paniculata_contig61401.13850.1|Name=mRNA_H-paniculata_contig61401.13850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig61401:519..650- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTTCAGCAACATCTTCAACGGGTATGACCACCAGGCCTTTTCTGTAGT
AGAACCTACATGTATCGACAACTATTTTTCACATGTGCACGAGATTGGTC
ACAACTTGGGCTGCCTCCACGACCGTGGCGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig61401:519..650-

>mRNA_H-paniculata_contig61401.13850.1 ID=mRNA_H-paniculata_contig61401.13850.1|Name=mRNA_H-paniculata_contig61401.13850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig61401:519..650- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTTCAGCAACATCTTCAACGGGTATGACCACCAGGCCTTTTCTGTAGT
AGAACCTACATGTATCGACAACTATTTTTCACATGTGCACGAGATTGGTC
ACAACTTGGGCTGCCTCCACGACCGTGGCGATCTCTTCAGCAACATCTTC
AACGGGTATGACCACCAGGCCTTTTCTGTAGTAGAACCTACATGTATCGA
CAACTATTTTTCACATGTGCACGAGATTGGTCACAACTTGGGCTGCCTCC
ACGACCGTGGCGAT
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