mRNA_H-paniculata_contig60895.13787.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60895.13787.1
Unique NamemRNA_H-paniculata_contig60895.13787.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig60895.13787.1 vs. uniprot
Match: D7FQ22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ22_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.080e-13
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   10 QHEWRCHRGHHFWQTPNNVRRSAGGRRIATFCKVC 114
            +HEWRC RGH FW TPNNVRR+ GGRR+ATFCK+C
Sbjct:  213 KHEWRCKRGHTFWNTPNNVRRAEGGRRVATFCKIC 247
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BLAST of mRNA_H-paniculata_contig60895.13787.1 vs. uniprot
Match: A0A6H5JCH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.760e-13
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   10 QHEWRCHRGHHFWQTPNNVRRSAGGRRIATFCKVC 114
            +HEWRC RGH FW TPNNVRR+ GGRR+ATFCK+C
Sbjct:  390 KHEWRCKRGHTFWNTPNNVRRAEGGRRVATFCKIC 424
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60895.13787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ22_ECTSI2.080e-1377.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCH6_9PHAE2.760e-1377.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60895contigH-paniculata_contig60895:529..642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930681.318606-CDS-H-paniculata_contig60895:528..6421622930681.318606-CDS-H-paniculata_contig60895:528..642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60895 529..642 +
1691481403.795938-CDS-H-paniculata_contig60895:528..6421691481403.795938-CDS-H-paniculata_contig60895:528..642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60895 529..642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60895.13787.1prot_H-paniculata_contig60895.13787.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60895 529..642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60895.13787.1

>prot_H-paniculata_contig60895.13787.1 ID=prot_H-paniculata_contig60895.13787.1|Name=mRNA_H-paniculata_contig60895.13787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=38bp
MHTQHEWRCHRGHHFWQTPNNVRRSAGGRRIATFCKVC
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mRNA from alignment at H-paniculata_contig60895:529..642+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60895.13787.1 ID=mRNA_H-paniculata_contig60895.13787.1|Name=mRNA_H-paniculata_contig60895.13787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=114bp|location=Sequence derived from alignment at H-paniculata_contig60895:529..642+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATACGCAGCATGAGTGGCGATGTCACCGCGGTCATCATTTCTGGCA
AACCCCCAACAACGTACGTCGCTCGGCTGGAGGGCGACGGATTGCGACGT
TCTGCAAGGTATGC
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Coding sequence (CDS) from alignment at H-paniculata_contig60895:529..642+

>mRNA_H-paniculata_contig60895.13787.1 ID=mRNA_H-paniculata_contig60895.13787.1|Name=mRNA_H-paniculata_contig60895.13787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at H-paniculata_contig60895:529..642+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATACGCAGCATGAGTGGCGATGTCACCGCGGTCATCATTTCTGGCA
AACCCCCAACAACGTACGTCGCTCGGCTGGAGGGCGACGGATTGCGACGT
TCTGCAAGGTATGCATGCATACGCAGCATGAGTGGCGATGTCACCGCGGT
CATCATTTCTGGCAAACCCCCAACAACGTACGTCGCTCGGCTGGAGGGCG
ACGGATTGCGACGTTCTGCAAGGTATGC
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