mRNA_H-paniculata_contig60523.13732.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60523.13732.1
Unique NamemRNA_H-paniculata_contig60523.13732.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig60523.13732.1 vs. uniprot
Match: D8LG52_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG52_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 9.670e-21
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:   10 QVVEAATEDYPEVQDLLKRFTTLKDANKDLTEAQMRDEGETERLRSEFSSYTKER 174
            QVVEAATEDY EVQDLLKRF TLKDANK+L EAQ RDEGETERLRSEFS+YTKER
Sbjct:  164 QVVEAATEDYSEVQDLLKRFATLKDANKNLNEAQARDEGETERLRSEFSNYTKER 218
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BLAST of mRNA_H-paniculata_contig60523.13732.1 vs. uniprot
Match: A0A6G0WWJ3_9STRA (DUF4200 domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0WWJ3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.930e-9
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:   13 VVEAATEDYPEVQDLLKRFTTLKDANKDLTEAQMRDEGETERLRSEFSSYTKER 174
            V EA  EDYPE+ DL+ R+ TLKDAN+DL+E Q   E + ER R +F+++TKER
Sbjct:  156 VQEAVPEDYPEITDLVNRYNTLKDANRDLSENQKVHEKDNERKRQKFATFTKER 209
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BLAST of mRNA_H-paniculata_contig60523.13732.1 vs. uniprot
Match: A0A1V9ZN48_9STRA (DUF4200 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZN48_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.040e-8
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   13 VVEAATEDYPEVQDLLKRFTTLKDANKDLTEAQMRDEGETERLRSEFSSYTKER 174
            V E+  EDYPE+ DL+ R+ TLKDAN+DL+E+Q   E + ER R +F+++TKER
Sbjct:  131 VQESVPEDYPEITDLVNRYNTLKDANRDLSESQRLHEKDNERKRIKFANFTKER 184
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BLAST of mRNA_H-paniculata_contig60523.13732.1 vs. uniprot
Match: A0A3L6V6H8_9STRA (DUF4200 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V6H8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.210e-8
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   13 VVEAATEDYPEVQDLLKRFTTLKDANKDLTEAQMRDEGETERLRSEFSSYTKER 174
            V E   EDYPE+ DL+ R+ TLKDAN+DL+E Q   E + ER R +F+++TKER
Sbjct:  131 VQETVPEDYPEITDLVNRYNTLKDANRDLSENQRLHESDNERKRVKFATFTKER 184
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BLAST of mRNA_H-paniculata_contig60523.13732.1 vs. uniprot
Match: W4GMF7_9STRA (DUF4200 domain-containing protein n=10 Tax=Aphanomyces TaxID=100860 RepID=W4GMF7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.000e-8
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   13 VVEAATEDYPEVQDLLKRFTTLKDANKDLTEAQMRDEGETERLRSEFSSYTKER 174
            V E   EDYPE+ DL+ R+ TLKDAN+DL+E Q   E + ER R +F+++TKER
Sbjct:  143 VQETVPEDYPEITDLVNRYNTLKDANRDLSENQRLHESDNERKRVKFATFTKER 196
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BLAST of mRNA_H-paniculata_contig60523.13732.1 vs. uniprot
Match: A0A067CH33_SAPPC (DUF4200 domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CH33_SAPPC)

HSP 1 Score: 57.8 bits (138), Expect = 2.710e-8
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:   13 VVEAATEDYPEVQDLLKRFTTLKDANKDLTEAQMRDEGETERLRSEFSSYTKER 174
            V E+  EDYPE+ DL+ R+ TLKDAN+DL+E Q   E + ER R +F+++TKER
Sbjct:  141 VQESVPEDYPEITDLVNRYNTLKDANRDLSENQALHERDNERKRIKFATFTKER 194
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BLAST of mRNA_H-paniculata_contig60523.13732.1 vs. uniprot
Match: A0A7S2BF14_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BF14_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.840e-8
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:   13 VVEAATEDYPEVQDLLKRFTTLKDANKDLTEAQMRDEGETERLRSEFSSYTKER 174
            VVE  ++DY E+QDLL R+ TLKDAN+DL +AQ + E + E  R EF+++ KER
Sbjct:  183 VVEGGSDDYHEIQDLLNRYKTLKDANQDLADAQRKHEQDNEDKRLEFANFKKER 236
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BLAST of mRNA_H-paniculata_contig60523.13732.1 vs. uniprot
Match: A0A2D4C4J7_PYTIN (DUF4200 domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4J7_PYTIN)

HSP 1 Score: 55.5 bits (132), Expect = 1.860e-7
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   13 VVEAATEDYPEVQDLLKRFTTLKDANKDLTEAQMRDEGETERLRSEFSSYTKER 174
            V E   EDYPEV DL+ R+ TLK+ N+DL++ Q+  E E ER R EF+++ KER
Sbjct:  148 VQETVPEDYPEVADLVNRYRTLKETNRDLSQNQLHHEEENERKRVEFANFQKER 201
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BLAST of mRNA_H-paniculata_contig60523.13732.1 vs. uniprot
Match: A0A8K1C6S1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6S1_PYTOL)

HSP 1 Score: 54.3 bits (129), Expect = 4.740e-7
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   13 VVEAATEDYPEVQDLLKRFTTLKDANKDLTEAQMRDEGETERLRSEFSSYTKER 174
            V E   EDYPEV DL+ R+ TLK+ N+DL++ Q++ E E E  R EF+S+ KER
Sbjct:  153 VQETVPEDYPEVADLVNRYRTLKETNRDLSQNQVQHEQENESKRLEFASFQKER 206
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BLAST of mRNA_H-paniculata_contig60523.13732.1 vs. uniprot
Match: A0A024G409_9STRA (DUF4200 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G409_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.700e-6
Identity = 23/54 (42.59%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:   13 VVEAATEDYPEVQDLLKRFTTLKDANKDLTEAQMRDEGETERLRSEFSSYTKER 174
            V EAA ED+PE+ DL+ R+ TL D N+DL + Q R++ E ++ R++++++ +ER
Sbjct:  899 VQEAAPEDFPEISDLVNRYRTLSDTNRDLRQLQSRNDSENDKKRTDYTTFQRER 952
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60523.13732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LG52_ECTSI9.670e-2189.09Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A6G0WWJ3_9STRA7.930e-955.56DUF4200 domain-containing protein n=2 Tax=Aphanomy... [more]
A0A1V9ZN48_9STRA1.040e-853.70DUF4200 domain-containing protein n=1 Tax=Thrausto... [more]
A0A3L6V6H8_9STRA1.210e-853.70DUF4200 domain-containing protein n=1 Tax=Aphanomy... [more]
W4GMF7_9STRA2.000e-853.70DUF4200 domain-containing protein n=10 Tax=Aphanom... [more]
A0A067CH33_SAPPC2.710e-853.70DUF4200 domain-containing protein n=3 Tax=Saproleg... [more]
A0A7S2BF14_9STRA3.840e-853.70Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2D4C4J7_PYTIN1.860e-751.85DUF4200 domain-containing protein (Fragment) n=1 T... [more]
A0A8K1C6S1_PYTOL4.740e-751.85Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024G409_9STRA1.700e-642.59DUF4200 domain-containing protein n=1 Tax=Albugo c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60523contigH-paniculata_contig60523:162..338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue3.3e-17
Seed eggNOG ortholog2880.D8LG52
Preferred nameFAP73
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0001578,GO:0003341,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0032838,GO:0034622,GO:0035082,GO:0036159,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0044877,GO:0048870,GO:0050790,GO:0051179,GO:0051336,GO:0051674,GO:0060271,GO:0065003,GO:0065007,GO:0065009,GO:0070286,GO:0070840,GO:0070925,GO:0071840,GO:0097014,GO:0097545,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:2000574
EggNOG free text desc.inner dynein arm assembly
EggNOG OGs28JKH@1,2QRZS@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size177
Cds size177
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930674.632231-CDS-H-paniculata_contig60523:161..3381622930674.632231-CDS-H-paniculata_contig60523:161..338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60523 162..338 +
1691481400.8727365-CDS-H-paniculata_contig60523:161..3381691481400.8727365-CDS-H-paniculata_contig60523:161..338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60523 162..338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60523.13732.1prot_H-paniculata_contig60523.13732.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60523 162..338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60523.13732.1

>prot_H-paniculata_contig60523.13732.1 ID=prot_H-paniculata_contig60523.13732.1|Name=mRNA_H-paniculata_contig60523.13732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
MSYQVVEAATEDYPEVQDLLKRFTTLKDANKDLTEAQMRDEGETERLRSE
FSSYTKER*
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mRNA from alignment at H-paniculata_contig60523:162..338+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60523.13732.1 ID=mRNA_H-paniculata_contig60523.13732.1|Name=mRNA_H-paniculata_contig60523.13732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig60523:162..338+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATACCAGGTGGTAGAGGCCGCTACCGAGGACTATCCAGAAGTGCA
GGACCTCCTTAAACGGTTCACTACTTTGAAAGACGCGAACAAGGATCTGA
CTGAAGCCCAAATGCGCGACGAGGGAGAGACGGAGCGACTGAGGTCAGAG
TTTAGCAGCTACACGAAAGAGAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig60523:162..338+

>mRNA_H-paniculata_contig60523.13732.1 ID=mRNA_H-paniculata_contig60523.13732.1|Name=mRNA_H-paniculata_contig60523.13732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig60523:162..338+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATACCAGGTGGTAGAGGCCGCTACCGAGGACTATCCAGAAGTGCA
GGACCTCCTTAAACGGTTCACTACTTTGAAAGACGCGAACAAGGATCTGA
CTGAAGCCCAAATGCGCGACGAGGGAGAGACGGAGCGACTGAGGTCAGAG
TTTAGCAGCTACACGAAAGAGAGGTGAATGTCATACCAGGTGGTAGAGGC
CGCTACCGAGGACTATCCAGAAGTGCAGGACCTCCTTAAACGGTTCACTA
CTTTGAAAGACGCGAACAAGGATCTGACTGAAGCCCAAATGCGCGACGAG
GGAGAGACGGAGCGACTGAGGTCAGAGTTTAGCAGCTACACGAAAGAGAG
GTGA
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