mRNA_H-paniculata_contig6038.13717.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6038.13717.1
Unique NamemRNA_H-paniculata_contig6038.13717.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6038.13717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6038contigH-paniculata_contig6038:11772..12161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size390
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930672.1568377-CDS-H-paniculata_contig6038:11771..121611622930672.1568377-CDS-H-paniculata_contig6038:11771..12161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6038 11772..12161 +
1691481399.929039-CDS-H-paniculata_contig6038:11771..121611691481399.929039-CDS-H-paniculata_contig6038:11771..12161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6038 11772..12161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6038.13717.1prot_H-paniculata_contig6038.13717.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6038 11772..12161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6038.13717.1

>prot_H-paniculata_contig6038.13717.1 ID=prot_H-paniculata_contig6038.13717.1|Name=mRNA_H-paniculata_contig6038.13717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
MTVTCSKGCRYSSNDDDCYHGNDDGRYQNKDDSGKEAEMTDRRNAKQKTT
VTEQYAHYPPQNPVLIPGITRPVQYTHARLCSETKVTATKYTHPCQHATH
DIQILRVGSPNTCPTQCKPGDWYSVSKPH*
back to top

mRNA from alignment at H-paniculata_contig6038:11772..12161+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6038.13717.1 ID=mRNA_H-paniculata_contig6038.13717.1|Name=mRNA_H-paniculata_contig6038.13717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=390bp|location=Sequence derived from alignment at H-paniculata_contig6038:11772..12161+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGTTACATGTAGCAAAGGTTGCCGTTACAGCAGCAACGACGATGA
CTGTTACCACGGCAACGATGATGGCCGTTACCAGAACAAAGACGATAGCG
GTAAAGAGGCAGAGATGACTGACCGCCGAAACGCAAAGCAGAAGACGACG
GTTACGGAGCAATATGCGCACTATCCGCCACAAAACCCAGTGCTAATCCC
GGGGATTACACGTCCTGTACAGTACACCCATGCCCGACTTTGTTCAGAAA
CAAAGGTAACAGCTACAAAGTACACACATCCATGCCAGCACGCTACACAC
GATATTCAAATCCTGAGGGTGGGTAGCCCGAACACATGCCCAACTCAGTG
CAAACCCGGGGATTGGTACAGCGTATCAAAACCACATTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6038:11772..12161+

>mRNA_H-paniculata_contig6038.13717.1 ID=mRNA_H-paniculata_contig6038.13717.1|Name=mRNA_H-paniculata_contig6038.13717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig6038:11772..12161+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGTTACATGTAGCAAAGGTTGCCGTTACAGCAGCAACGACGATGA
CTGTTACCACGGCAACGATGATGGCCGTTACCAGAACAAAGACGATAGCG
GTAAAGAGGCAGAGATGACTGACCGCCGAAACGCAAAGCAGAAGACGACG
GTTACGGAGCAATATGCGCACTATCCGCCACAAAACCCAGTGCTAATCCC
GGGGATTACACGTCCTGTACAGTACACCCATGCCCGACTTTGTTCAGAAA
CAAAGGTAACAGCTACAAAGTACACACATCCATGCCAGCACGCTACACAC
GATATTCAAATCCTGAGGGTGGGTAGCCCGAACACATGCCCAACTCAGTG
CAAACCCGGGGATTGGTACAGCGTATCAAAACCACATTAGATGACGGTTA
CATGTAGCAAAGGTTGCCGTTACAGCAGCAACGACGATGACTGTTACCAC
GGCAACGATGATGGCCGTTACCAGAACAAAGACGATAGCGGTAAAGAGGC
AGAGATGACTGACCGCCGAAACGCAAAGCAGAAGACGACGGTTACGGAGC
AATATGCGCACTATCCGCCACAAAACCCAGTGCTAATCCCGGGGATTACA
CGTCCTGTACAGTACACCCATGCCCGACTTTGTTCAGAAACAAAGGTAAC
AGCTACAAAGTACACACATCCATGCCAGCACGCTACACACGATATTCAAA
TCCTGAGGGTGGGTAGCCCGAACACATGCCCAACTCAGTGCAAACCCGGG
GATTGGTACAGCGTATCAAAACCACATTAG
back to top