mRNA_H-paniculata_contig6034.13713.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6034.13713.1
Unique NamemRNA_H-paniculata_contig6034.13713.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6034.13713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6034contigH-paniculata_contig6034:8032..8508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size465
Cds size465
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930671.9397454-CDS-H-paniculata_contig6034:8031..81451622930671.9397454-CDS-H-paniculata_contig6034:8031..8145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6034 8032..8145 +
1691481399.8882132-CDS-H-paniculata_contig6034:8031..81451691481399.8882132-CDS-H-paniculata_contig6034:8031..8145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6034 8032..8145 +
1622930671.955335-CDS-H-paniculata_contig6034:8157..85081622930671.955335-CDS-H-paniculata_contig6034:8157..8508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6034 8158..8508 +
1691481399.8985748-CDS-H-paniculata_contig6034:8157..85081691481399.8985748-CDS-H-paniculata_contig6034:8157..8508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6034 8158..8508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6034.13713.1prot_H-paniculata_contig6034.13713.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6034 8032..8508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6034.13713.1

>prot_H-paniculata_contig6034.13713.1 ID=prot_H-paniculata_contig6034.13713.1|Name=mRNA_H-paniculata_contig6034.13713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
MSPDSTAFENYTPAPAGTMCEIADGTFLPVAEFGKLELPGSKTITTVLQR
VAHIPELGRNLISMREASKTTETGWVLNDENTNLGLGEEGRLVFTTSAAS
GLYEIDPVRSAAGNAKALTALSSATRNVMEMHRLLAHANVAITRKHKIAP
RGEK*
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mRNA from alignment at H-paniculata_contig6034:8032..8508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6034.13713.1 ID=mRNA_H-paniculata_contig6034.13713.1|Name=mRNA_H-paniculata_contig6034.13713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=477bp|location=Sequence derived from alignment at H-paniculata_contig6034:8032..8508+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACCCGACTCTACGGCGTTCGAAAACTACACGCCGGCGCCGGCTGG
CACCATGTGCGAGATAGCTGATGGGACATTCCTGCCGGTGGCGGAATTCG
GGAAGCTGGAGCTCGTTATGAAATAGCCTGGGAGCAAAACCATTACAACG
GTGCTGCAGAGGGTCGCGCACATACCCGAATTAGGACGCAACCTCATTTC
TATGCGCGAGGCGTCGAAGACCACCGAAACGGGTTGGGTCCTGAACGATG
AGAACACGAATTTGGGCCTCGGAGAAGAAGGGAGACTCGTGTTCACCACG
TCTGCAGCATCGGGGTTGTACGAGATAGATCCCGTGCGAAGTGCTGCAGG
GAACGCAAAAGCCCTGACCGCACTGAGTTCGGCGACACGGAACGTCATGG
AGATGCATCGACTGCTCGCACACGCGAACGTGGCGATCACCAGGAAACAC
AAGATAGCGCCGCGCGGAGAGAAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6034:8032..8508+

>mRNA_H-paniculata_contig6034.13713.1 ID=mRNA_H-paniculata_contig6034.13713.1|Name=mRNA_H-paniculata_contig6034.13713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig6034:8032..8508+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACCCGACTCTACGGCGTTCGAAAACTACACGCCGGCGCCGGCTGG
CACCATGTGCGAGATAGCTGATGGGACATTCCTGCCGGTGGCGGAATTCG
GGAAGCTGGAGCTCATGTCACCCGACTCTACGGCGTTCGAAAACTACACG
CCGGCGCCGGCTGGCACCATGTGCGAGATAGCTGATGGGACATTCCTGCC
GGTGGCGGAATTCGGGAAGCTGGAGCTCCCTGGGAGCAAAACCATTACAA
CGGTGCTGCAGAGGGTCGCGCACATACCCGAATTAGGACGCAACCTCATT
TCTATGCGCGAGGCGTCGAAGACCACCGAAACGGGTTGGGTCCTGAACGA
TGAGAACACGAATTTGGGCCTCGGAGAAGAAGGGAGACTCGTGTTCACCA
CGTCTGCAGCATCGGGGTTGTACGAGATAGATCCCGTGCGAAGTGCTGCA
GGGAACGCAAAAGCCCTGACCGCACTGAGTTCGGCGACACGGAACGTCAT
GGAGATGCATCGACTGCTCGCACACGCGAACGTGGCGATCACCAGGAAAC
ACAAGATAGCGCCGCGCGGAGAGAAGTGACCTGGGAGCAAAACCATTACA
ACGGTGCTGCAGAGGGTCGCGCACATACCCGAATTAGGACGCAACCTCAT
TTCTATGCGCGAGGCGTCGAAGACCACCGAAACGGGTTGGGTCCTGAACG
ATGAGAACACGAATTTGGGCCTCGGAGAAGAAGGGAGACTCGTGTTCACC
ACGTCTGCAGCATCGGGGTTGTACGAGATAGATCCCGTGCGAAGTGCTGC
AGGGAACGCAAAAGCCCTGACCGCACTGAGTTCGGCGACACGGAACGTCA
TGGAGATGCATCGACTGCTCGCACACGCGAACGTGGCGATCACCAGGAAA
CACAAGATAGCGCCGCGCGGAGAGAAGTGA
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