mRNA_H-paniculata_contig60111.13688.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60111.13688.1
Unique NamemRNA_H-paniculata_contig60111.13688.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 1.120e-67
Identity = 119/286 (41.61%), Postives = 177/286 (61.89%), Query Frame = 1
Query:    1 ICVGSTMWRTLAARVVRQYRPKLEEVNLSGRQYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLV-LAMRELMEENLRSIHFLVQELARIGVYINNAKTKAVPPMNH--IPTEREIAAQAVMGISVANGGGAVVVGTPIGTDAFVEQHTVTIVKEKGAKYLERLLAPMPDKQAAMLIATKCRVLKICFLER 849
            +C+G T  R +AA  VR+++PKLEE+     Q+GVAV+GG E + + A+  HQ GHW++  DC+NAFN+ KR A + +     P L  ++A+CY+E PA  I+ +D+GERR I   +G+ QGDG+GP LFC  + PI+ K R + +  GV L  Y+DD++ L  + +  EN++ I  LV EL  +G+ +N  K+ A+PP  H   P ER +   A  G+ +A  G   VVG PIGTDA+VE   + ++ E GA  L R+L  MPDKQ A L+ ++    +  ++ER
Sbjct:   81 VCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDA--GLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIER 363          
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 2.460e-67
Identity = 120/285 (42.11%), Postives = 177/285 (62.11%), Query Frame = 1
Query:    1 ICVGSTMWRTLAARVVRQYRPKLEEVNLSGRQYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQELARIGVYINNAKTKAVPPMNH--IPTEREIAAQAVMGISVANGGGAVVVGTPIGTDAFVEQHTVTIVKEKGAKYLERLLAPMPDKQAAMLIATKCRVLKICFLER 849
            +C+G T  R +AA  VR+++PKLEE+     Q+GVAV+GG E + + A+  HQ GHW++  DC+NAFN+ KR A + +     P L  ++A+CY+E PA  I+ +D+GERR I   +G+ QGDG+GP LFC  + PI+ K R + +  GV L  Y+DD+ L  +++  EN++    LV EL  +G+ +N  K+ A+PP  H   PTER     A  G+ +A  G   VVG PIGTDA+VE   + ++ E GA+ L RLL  MPDKQ A L+ ++    +  ++ER
Sbjct:  449 VCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKDITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGHDVTPTERRPLGDA--GLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGAEKLARLLVRMPDKQVAHLVTSQSLTQRSGYIER 730          
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 3.750e-66
Identity = 113/283 (39.93%), Postives = 186/283 (65.72%), Query Frame = 1
Query:    1 ICVGSTMWRTLAARVVRQYRPKLEEVNLSGRQYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQELARIGVYINNAKTKAVPPMNHIPTEREIAAQAVMGISVANGGGAVVVGTPIGTDAFVEQHTVTIVKEKGAKYLERLLAPMPDKQAAMLIATKCRVLKICFLER 849
            +C+G T  R +AA  VRQ++PKLEE+     Q+GVAV+GG E + + A+  HQ G+W+I  DC+NAFN+ KR A + +     P L  ++A+CY+E PA  ++++D+GERR +  ++G+ QGDG+GP LF + + PI+ K +++ +  GV    Y+DD+ L +++L EE+++++  LV ELA +G+ +N AK+ A+PP  H+ T+++      +G++VA G G  VVG PIGTD +V +  + ++ E GA+ L R+L  M D+Q A LI +   + +  ++ER
Sbjct:  620 VCIGMTWRRLIAAGTVRQWKPKLEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQDKYKPLGVAFKAYMDDITLHLKDLTEESVQAMTDLVDELAEVGIVVNRAKSSALPPPGHMITDQQRRLLEGVGLTVA-GEGITVVGVPIGTDNYVREFAMKVITEGGAEKLARMLPLMSDRQVANLITSLSLIQRSAYIER 901          
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 1.370e-65
Identity = 119/285 (41.75%), Postives = 176/285 (61.75%), Query Frame = 1
Query:    1 ICVGSTMWRTLAARVVRQYRPKLEEVNLSGRQYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQELARIGVYINNAKTKAVPPMNH--IPTEREIAAQAVMGISVANGGGAVVVGTPIGTDAFVEQHTVTIVKEKGAKYLERLLAPMPDKQAAMLIATKCRVLKICFLER 849
            +C+G T  R +AA  VR+++PKLEE+     Q+GVAV+GG E + + A+  HQ GHW++  DC+NAFN+ KR A + +     P L  ++A+CY+E PA  I+ +D+GERR I   +G+ QGDG+GP LFC  + PI+ K R + +  GV L  Y+DD+ L  + +  EN++ I  LV EL  +G+ +N  K+ A+PP  H   P ER +   A  G+ +A  G   VVG PIGTDA+VE   + ++ E GA  L R+L  MPDKQ A L+ ++    +  ++ER
Sbjct:  450 VCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDA--GLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIER 731          
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 1.250e-64
Identity = 119/285 (41.75%), Postives = 176/285 (61.75%), Query Frame = 1
Query:    1 ICVGSTMWRTLAARVVRQYRPKLEEVNLSGRQYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQELARIGVYINNAKTKAV-PPMNHI-PTEREIAAQAVMGISVANGGGAVVVGTPIGTDAFVEQHTVTIVKEKGAKYLERLLAPMPDKQAAMLIATKCRVLKICFLER 849
            +C+G T  R +AA  VR+++PKLEE+     Q+GVAV+GG E + + A+  HQ GHW++  DC+NAFN+ KR A + +     P L  ++A+CY+E PA  I+ +D+GERR I   +G+ QGDG+GP LFC  + PI+ K R + +  GV L  Y+DD+ L  + +  EN++ I  LV EL  +G+ +N  K+ A+ PP   + P ER +   A  G+ +A  G   VVG PIGTDA+VE   + ++ E GA  L R+L  MPDKQ A L+ ++    +  +LER
Sbjct:  471 VCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALHPPGRDVAPAERRLLGDA--GLPIAEEG-ITVVGVPIGTDAYVEDIAIKVIAEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYLER 752          
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 5.010e-63
Identity = 116/279 (41.58%), Postives = 170/279 (60.93%), Query Frame = 1
Query:   22 WRTL-AARVVRQYRPKLEEVNLSGRQYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQELARIGVYINNAKTKAVPPMNH--IPTEREIAAQAVMGISVANGGGAVVVGTPIGTDAFVEQHTVTIVKEKGAKYLERLLAPMPDKQAAMLIATKCRVLKICFLER 849
            WR L AA  VR+++PKLEE+     Q+G AV GG E + + A+  HQ GHW++  DC+NAFN+ KR A + +     P L  ++A+CY+E PA  I+ +D+GERR I   +G+ QGDG+GP LFC  + PI+ K R + +  GV L  Y+DD+ L  + +  EN++ I  +V EL  +G+ +N  K+ A+PP  H   P ER +   A  G+ +A  G   VVG PIGTDA+VE   + ++ E GA  L R+L  MPDKQ A L+ ++    +  ++ER
Sbjct:    3 WRRLIAAGTVREWKPKLEEIFREADQFGAAVVGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDVVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDA--GLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIER 278          
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 1.190e-56
Identity = 101/240 (42.08%), Postives = 148/240 (61.67%), Query Frame = 1
Query:    1 ICVGSTMWRTLAARVVRQYRPKLEEVNLSGRQYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQELARIGVYINNAKTKAVPPMNH--IPTEREIAAQAVMGISVANGGGAVVVGTPIGTDAFVE 714
            +C+G T  R +AA  VR+++PKLEE+     Q+GVAV+GG E + + A+  HQ GHW++  DC++AFN+ KR   + +     P +  ++A+CY+E PA  I+ +D+GERR I   +G+ QGDG+GP LFC  + PI+ K R   +  GV L  Y+DD+ L    +  EN++ I  LV EL  +G+ +N  K+ A+PP  H   P ER +   A  G+ +A  G   VVG PIGTDA+VE
Sbjct:   74 VCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSDAFNTGKRTVIMAQAAKSVPDVLGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAMYDHLGVCLKAYMDDISLHFNNITAENIQLIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDA--GLPIAEEG-ITVVGVPIGTDAYVE 310          
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 3.840e-48
Identity = 82/201 (40.80%), Postives = 124/201 (61.69%), Query Frame = 1
Query:    1 ICVGSTMWRTLAARVVRQYRPKLEEVNLSGRQYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQELARIGVYINNAKTKAVPPMNH 603
            +C+G T  R +AA  VR+++PKLEE+     Q+GVAV+GG E + + A+   Q GHW++  DC+N  N+ KR A + +     P L   +A+CYE  PA  I+ +D+GERR I   +G+ QGDG+GP LFC  + PI+ K R + +  GV L  Y+DD+ L  + +  E+++ I  LV EL  +G+ +N  K+ A+PP  H
Sbjct:  127 VCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVTGGVEQVAMDAQLVDQTGHWVVQTDCSNGLNTGKRTAIMAQAAKSVPDLVGCIARCYE-LPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAESIQVIPDLVDELEAVGIIVNRGKSSALPPPGH 326          
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.370e-47
Identity = 96/239 (40.17%), Postives = 141/239 (59.00%), Query Frame = 1
Query:  157 QLGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQELARIGVYINNAKTKAVPPMNH--IPTEREIAAQAVMGISVANGGGAVVVGTPIGTDAFVEQHTVTIVKEKGAKYLERLLAPMPDKQAAMLIATKCRVLKICFLERVMGAEL 867
            Q GHW++  DC+NAFN+ KR A + +     P L  ++A+CY+E PA  I+ +D+GERR I   +G+ QGDG+GP LFC  + PI+ K R + +  GV L  Y+DD+ L  + +  E ++ I  LV EL  +G+ +N  K+ A+PP  H   P ER +   A  G+ +A  G   VVG PI TDA+VE   + ++ E GA  L R+L  MPDKQ A L+ ++    +   +ER +  EL
Sbjct:  528 QTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAEFIQVIPDLVNELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDA--GLPIAEEG-ITVVGVPIETDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGCIERGINHEL 763          
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 1.770e-47
Identity = 92/221 (41.63%), Postives = 135/221 (61.09%), Query Frame = 1
Query:  160 LGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQELARIGVYINNAKTKAVPPMNH--IPTEREIAAQAVMGISVANGGGAVVVGTPIGTDAFVEQHTVTIVKEKGAKYLERLLAPMPDKQAAMLIATK 816
            LG W++  DC+NAFN+ KR A + +     P L  ++A+CY+E PA  I+ +D+GERR I   +G+ QGDG+GP LFC  + PI+ K R + +  GV L  Y+DD+ L  + +  EN++ I  LV EL  +G+ +N  K+ A+PP  H   P ER +   A  G+ +A  G   VVG PIGTDA+VE   + ++ E GA  L R++  MPDKQ A L+ ++
Sbjct:  142 LGQWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVSKVRAKYDHLGVSLKAYVDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDA--GLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMVVRMPDKQVAHLVTSQ 359          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL14_9PHAE1.120e-6741.61Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KKQ2_9PHAE2.460e-6742.11Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JH58_9PHAE3.750e-6639.93Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE1.370e-6541.75Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JI32_9PHAE1.250e-6441.75Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KYJ9_9PHAE5.010e-6341.58Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K0V7_9PHAE1.190e-5642.08Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KT19_9PHAE3.840e-4840.80Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KJC0_9PHAE1.370e-4740.17Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JLG6_9PHAE1.770e-4741.63Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60111contigH-paniculata_contig60111:90..956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size867
Cds size474
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930669.0238209-CDS-H-paniculata_contig60111:89..5631622930669.0238209-CDS-H-paniculata_contig60111:89..563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60111 90..563 -
1691481398.5062723-CDS-H-paniculata_contig60111:89..5631691481398.5062723-CDS-H-paniculata_contig60111:89..563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60111 90..563 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930669.0377946-UTR-H-paniculata_contig60111:563..9561622930669.0377946-UTR-H-paniculata_contig60111:563..956Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60111 564..956 -
1691481398.5186272-UTR-H-paniculata_contig60111:563..9561691481398.5186272-UTR-H-paniculata_contig60111:563..956Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60111 564..956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60111.13688.1prot_H-paniculata_contig60111.13688.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60111 90..563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60111.13688.1

>prot_H-paniculata_contig60111.13688.1 ID=prot_H-paniculata_contig60111.13688.1|Name=mRNA_H-paniculata_contig60111.13688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQEL
ARIGVYINNAKTKAVPPMNHIPTEREIAAQAVMGISVANGGGAVVVGTPI
GTDAFVEQHTVTIVKEKGAKYLERLLAPMPDKQAAMLIATKCRVLKICFL
ERVMGAEL
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mRNA from alignment at H-paniculata_contig60111:90..956-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60111.13688.1 ID=mRNA_H-paniculata_contig60111.13688.1|Name=mRNA_H-paniculata_contig60111.13688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=867bp|location=Sequence derived from alignment at H-paniculata_contig60111:90..956- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTGCGTAGGATCTACGATGTGGCGTACTTTGGCCGCTAGGGTGGTTAG GCAATACAGGCCGAAACTGGAGGAGGTAAACTTGTCGGGGCGGCAGTACG GGGTAGCAGTCTCGGGCGGCGCGGAACTCATGGGCCTCCGCGCAAAAGCA CACCACCAATTGGGGCATTGGCTTATCGCCCTCGACTGTACCAATGCTTT CAACTCCGTCAAGCGGGCGGCGACCGTGGAAGAAGTGGAAATCCGCACCC CGGGATTGACACCTTTCGTTGCCAAATGCTACGAGGAGAAGCCGGCAGAC ATAATTTTCCAGCTGGACACCGGTGAACGCAGGAAAATCTCCTAGAGCAC GGGAATCCACCAGGGCGACGGACTGGGACCCGCCCTCTTCTGCATGCCCG TGGGACCGATCTTGCGCAAGTGCCGAGAACAATTGGAGGCTCCTGGGGTG GAGCTGTTGGTCTACCTGGACGACCTGGTGCTGGCAATGAGGGAGCTAAT GGAAGAAAACTTGAGGTCGATCCATTTCCTCGTGCAAGAGCTAGCACGCA TAGGAGTGTATATTAACAACGCCAAGACGAAGGCGGTGCCCCCCATGAAC CACATCCCCACCGAAAGGGAGATCGCCGCGCAGGCGGTGATGGGCATCAG CGTCGCAAATGGAGGGGGGGCTGTGGTGGTGGGTACACCGATTGGGACCG ACGCATTCGTTGAGCAGCACACCGTCACCATAGTCAAGGAAAAGGGGGCA AAATACCTTGAGCGCCTTCTAGCTCCTATGCCTGACAAACAAGCGGCGAT GCTGATCGCCACAAAGTGCAGGGTCCTGAAGATCTGCTTCCTGGAGAGGG TGATGGGTGCCGAACTC
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Coding sequence (CDS) from alignment at H-paniculata_contig60111:90..956-

>mRNA_H-paniculata_contig60111.13688.1 ID=mRNA_H-paniculata_contig60111.13688.1|Name=mRNA_H-paniculata_contig60111.13688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig60111:90..956- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGTGGGACCGATCTTGCGCAAGTGCCGAGAACAATTGGAGGCTCC
TGGGGTGGAGCTGTTGGTCTACCTGGACGACCTGGTGCTGGCAATGAGGG
AGCTAATGGAAGAAAACTTGAGGTCGATCCATTTCCTCGTGCAAGAGCTA
GCACGCATAGGAGTGTATATTAACAACGCCAAGACGAAGGCGGTGCCCCC
CATGAACCACATCCCCACCGAAAGGGAGATCGCCGCGCAGGCGGTGATGG
GCATCAGCGTCGCAAATGGAGGGGGGGCTGTGGTGGTGGGTACACCGATT
GGGACCGACGCATTCGTTGAGCAGCACACCGTCACCATAGTCAAGGAAAA
GGGGGCAAAATACCTTGAGCGCCTTCTAGCTCCTATGCCTGACAAACAAG
CGGCGATGCTGATCGCCACAAAGTGCAGGGTCCTGAAGATCTGCTTCCTG
GAGAGGGTGATGGGTGCCGAACTCATGCCCGTGGGACCGATCTTGCGCAA
GTGCCGAGAACAATTGGAGGCTCCTGGGGTGGAGCTGTTGGTCTACCTGG
ACGACCTGGTGCTGGCAATGAGGGAGCTAATGGAAGAAAACTTGAGGTCG
ATCCATTTCCTCGTGCAAGAGCTAGCACGCATAGGAGTGTATATTAACAA
CGCCAAGACGAAGGCGGTGCCCCCCATGAACCACATCCCCACCGAAAGGG
AGATCGCCGCGCAGGCGGTGATGGGCATCAGCGTCGCAAATGGAGGGGGG
GCTGTGGTGGTGGGTACACCGATTGGGACCGACGCATTCGTTGAGCAGCA
CACCGTCACCATAGTCAAGGAAAAGGGGGCAAAATACCTTGAGCGCCTTC
TAGCTCCTATGCCTGACAAACAAGCGGCGATGCTGATCGCCACAAAGTGC
AGGGTCCTGAAGATCTGCTTCCTGGAGAGGGTGATGGGTGCCGAACTC
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