mRNA_H-paniculata_contig60028.13674.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 6.360e-10 Identity = 37/115 (32.17%), Postives = 61/115 (53.04%), Query Frame = 1
Query: 1 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAIALPNGSDLLCRKIRKLVFL 342
W+ DSGATAHMTP +F+YE N+ VT+A+G+ + + G G + + D I + V H+PGLD L S+ + +G++V ++ I + + +K+ K L
Sbjct: 263 WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVIWYKSTAIASAKKVGKAYML 374
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 5.650e-9 Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 1
Query: 1 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTV 258
W+ DSGATAHMTP E +FDY+ +++ VT+A+G+ + + G G + + D I V H+PGLD L S+ + +GL V
Sbjct: 160 WLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNV 243
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE) HSP 1 Score: 62.4 bits (150), Expect = 6.050e-9 Identity = 34/102 (33.33%), Postives = 54/102 (52.94%), Query Frame = 1
Query: 1 WVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRG-EIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAIALPNGS 303
W+ DSGA+AHMT +E ++T+A+G+ I G G ++ D E+ + +S V +VPGL TNL S++ + + L V +G I P G+
Sbjct: 275 WIIDSGASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDVSFNSDGCRIIDPKGN 376
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 8.210e-9 Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 1
Query: 1 WVADSGATAHMTPSNELMFDYE-TCSNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLT 255
W+ DSGAT+HMTP E +FD E T S++ VT+A+G+ L + G G + + + + I + V ++PGLD L S+ + +GLT
Sbjct: 155 WLIDSGATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAGQGTVRLTSLNGKHI---KMMEVLYIPGLDRRLLSVGKLAERGLT 237
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 9.580e-9 Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 1
Query: 1 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 285
W+ DSGATAHMTP + +F+Y S +++VT+A+G+ + + G G + + D I + V ++PGLD L S+ + +G++V + I
Sbjct: 245 WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSVGKLAERGMSVEFQRNSCVI 337
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.940e-8 Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 1
Query: 1 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 285
W+ DSGATAHMTP +F+Y+ SN+ VT+A+G+ + + G G + + D I V ++PGLD L S++ + +G++V +++ I
Sbjct: 266 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVRRLAERGMSVEFQKKSCTI 358
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: A0A6A4BQ03_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BQ03_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 2.830e-8 Identity = 33/96 (34.38%), Postives = 55/96 (57.29%), Query Frame = 1
Query: 1 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 285
W+ DSGATAHMTP +F+Y+ SN+ VT+A+G+ + + G G + + D I V ++PGLD L S+ + +G++V +++ I
Sbjct: 242 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLAERGMSVEFQKKSCTI 334
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: A0A225V0K2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V0K2_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 9.280e-8 Identity = 30/97 (30.93%), Postives = 55/97 (56.70%), Query Frame = 1
Query: 1 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAIA 288
W+ DSGAT HMTP + +++Y T ++++V +A+G+ + + G G + + D I + V HVPG D L S+ + ++G++V + I+
Sbjct: 169 WLIDSGATVHMTPHRDDLYEYSTIPADMYVAIADGKKIRVAGTGSVRLKGIDGKSIR---MVEVLHVPGFDRRLLSVGKLADRGMSVEFQRNSCVIS 262
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: A0A6A3IEW9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3IEW9_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 9.460e-8 Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 1
Query: 1 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 285
W+ DSGAT HMTP +F+Y+ SN+ VT+A+G+ + + G G + + D I V ++PGLD L S+ + ++G++V +++ I
Sbjct: 266 WLIDSGATVHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLADRGVSVEFQKKSCTI 358
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: A0A6A3KTF1_9STRA (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KTF1_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 9.630e-8 Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 1
Query: 1 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 285
W+ DSGAT HMTP +F+Y+ SN+ VT+A+G+ + + G G + + D I V ++PGLD L S+ + ++G++V +++ I
Sbjct: 266 WLIDSGATVHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLADRGVSVEFQKKSCTI 358 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig60028.13674.1 >prot_H-paniculata_contig60028.13674.1 ID=prot_H-paniculata_contig60028.13674.1|Name=mRNA_H-paniculata_contig60028.13674.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp MTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLback to top mRNA from alignment at H-paniculata_contig60028:129..473- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig60028.13674.1 ID=mRNA_H-paniculata_contig60028.13674.1|Name=mRNA_H-paniculata_contig60028.13674.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig60028:129..473- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig60028:129..473- >mRNA_H-paniculata_contig60028.13674.1 ID=mRNA_H-paniculata_contig60028.13674.1|Name=mRNA_H-paniculata_contig60028.13674.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig60028:129..473- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |