mRNA_H-paniculata_contig59904.13649.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59904.13649.1
Unique NamemRNA_H-paniculata_contig59904.13649.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.830e-10
Identity = 30/63 (47.62%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 KKPLRGQFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVAVQE 189
            +K +  +++FS+KTN+ G +V  KAR+VA G +QI GID+   F+  PSAA++KTV+AVA ++
Sbjct:  150 RKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHHSFSACPSAASIKTVIAVATEK 212          
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: A0A8H6YF94_9AGAR (Integrase catalytic domain-containing protein n=1 Tax=Mycena venus TaxID=2733690 RepID=A0A8H6YF94_9AGAR)

HSP 1 Score: 64.3 bits (155), Expect = 1.920e-10
Identity = 31/65 (47.69%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    4 KPLRGQFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVAVQEDLQ 198
            KP+R Q++F  K    G++ + KARLVADGR Q  GIDY+E F+PT   A ++T+LA++ Q +L+
Sbjct:  742 KPIRSQWVFVIKHKSDGSIERYKARLVADGRRQRHGIDYNEVFSPTFKPATLRTILALSAQHNLK 806          
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: A0A6H5KQV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV1_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.910e-10
Identity = 28/63 (44.44%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 KKPLRGQFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVAVQE 189
            +K +  +++F++KTN+ G +V  KAR+VA G +QI GID+    +  PSAA++KTV+AVA ++
Sbjct:   24 RKAIGSKWMFAWKTNETGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 86          
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: A0A5E4GEJ7_PRUDU (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GEJ7_PRUDU)

HSP 1 Score: 60.1 bits (144), Expect = 4.330e-10
Identity = 28/54 (51.85%), Postives = 41/54 (75.93%), Query Frame = 1
Query:   19 QFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVA 180
            +++F  KT++ GNVV+ KARLVA G TQ++GID+DE FAP     +V+ +LA+A
Sbjct:    2 KWIFKNKTDEQGNVVRNKARLVAQGYTQMEGIDFDETFAPVARLESVRLLLAIA 55          
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: UPI00090118BB (uncharacterized protein LOC109163335 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI00090118BB)

HSP 1 Score: 60.5 bits (145), Expect = 4.640e-10
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   19 QFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVA 180
            +++F  KT++ GN+ + KARLVA G TQI+GIDYDE FAP     +++ +LAVA
Sbjct:   70 KWIFKNKTDEAGNIARNKARLVAQGYTQIEGIDYDETFAPVARLESIRILLAVA 123          
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 7.740e-10
Identity = 28/63 (44.44%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 KKPLRGQFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVAVQE 189
            +K +  +++FS+KTN+ G +V  KAR+VA G ++I GID+    + +PSAA++KTV+AVA ++
Sbjct:   42 RKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAVATEK 104          
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: F2UPM9_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UPM9_SALR5)

HSP 1 Score: 62.4 bits (150), Expect = 9.180e-10
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    4 KPLRGQFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVAV 183
            K LR   +F  K +D G V+K KAR VA G +Q+QG++Y + FAPT + AA++T+LA+AV
Sbjct:  803 KLLRSMVIFRKKRDDQGKVIKYKARWVAKGYSQVQGVNYTDTFAPTATIAAIRTMLAMAV 862          
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: A0A8J4AXG8_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AXG8_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 9.190e-10
Identity = 26/65 (40.00%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    4 KPLRGQFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVAVQEDLQ 198
            +PL  +++++ K ++ G++++ KARLVA G TQ++G+DYDE +AP    A ++ +LAV  + DL+
Sbjct: 1032 RPLAVKWVYTVKRDEQGDILRYKARLVAKGYTQVEGVDYDEVYAPVSKHATLRALLAVVAERDLE 1096          
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: A0A6H5L4A4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A4_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.230e-9
Identity = 28/62 (45.16%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    1 KKPLRGQFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVAVQ 186
            +K +  +++FS+KTN+ G +V  K+R++A G +QI GID+   F+  PSAA++KTV+AVA +
Sbjct:   24 RKAIGSKWVFSWKTNEKGLIVDFKSRMIARGFSQIPGIDFHHSFSACPSAASIKTVIAVATE 85          
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: UPI000CED754C (uncharacterized protein LOC112097851 n=1 Tax=Citrus clementina TaxID=85681 RepID=UPI000CED754C)

HSP 1 Score: 61.6 bits (148), Expect = 1.700e-9
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   19 QFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVA 180
            +++F  KTN+ GN+V+ KARLVA G TQI+G+D+DE FAP     +++ + AVA
Sbjct:  788 KWIFKNKTNEFGNIVRNKARLVAQGYTQIEGVDFDETFAPVARIESIRLIFAVA 841          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNP9_9PHAE1.830e-1047.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H6YF94_9AGAR1.920e-1047.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQV1_9PHAE2.910e-1044.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E4GEJ7_PRUDU4.330e-1051.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00090118BB4.640e-1051.85uncharacterized protein LOC109163335 n=1 Tax=Ipomo... [more]
A0A6H5LAZ3_9PHAE7.740e-1044.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
F2UPM9_SALR59.180e-1050.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J4AXG8_9CHLO9.190e-1040.00Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A6H5L4A4_9PHAE1.230e-945.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI000CED754C1.700e-950.00uncharacterized protein LOC112097851 n=1 Tax=Citru... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59904contigH-paniculata_contig59904:2..199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score64.3
Seed ortholog evalue2.4e-08
Seed eggNOG ortholog946362.XP_004988812.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,COG2801@1,KOG0017@2759
COG Functional cat.J
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930662.1265407-CDS-H-paniculata_contig59904:1..1991622930662.1265407-CDS-H-paniculata_contig59904:1..199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59904 2..199 -
1691481394.729479-CDS-H-paniculata_contig59904:1..1991691481394.729479-CDS-H-paniculata_contig59904:1..199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59904 2..199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59904.13649.1prot_H-paniculata_contig59904.13649.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59904 2..199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59904.13649.1

>prot_H-paniculata_contig59904.13649.1 ID=prot_H-paniculata_contig59904.13649.1|Name=mRNA_H-paniculata_contig59904.13649.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
KKPLRGQFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSA
AAVKTVLAVAVQEDLQ
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mRNA from alignment at H-paniculata_contig59904:2..199-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59904.13649.1 ID=mRNA_H-paniculata_contig59904.13649.1|Name=mRNA_H-paniculata_contig59904.13649.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig59904:2..199- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAAACCGTTGAGGGGGCAGTTCCTTTTTTCGTATAAAACTAACGACAT GGGAAATGTGGTAAAGGTCAAAGCAAGATTGGTAGCTGATGGAAGGACAC AAATCCAAGGCATAGACTACGATGAAGGTTTTGCCCCTACCCCTTCCGCT GCTGCTGTAAAGACGGTGTTAGCCGTAGCAGTACAGGAGGATTTACAA
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Coding sequence (CDS) from alignment at H-paniculata_contig59904:2..199-

>mRNA_H-paniculata_contig59904.13649.1 ID=mRNA_H-paniculata_contig59904.13649.1|Name=mRNA_H-paniculata_contig59904.13649.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig59904:2..199- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAAACCGTTGAGGGGGCAGTTCCTTTTTTCGTATAAAACTAACGACAT
GGGAAATGTGGTAAAGGTCAAAGCAAGATTGGTAGCTGATGGAAGGACAC
AAATCCAAGGCATAGACTACGATGAAGGTTTTGCCCCTACCCCTTCCGCT
GCTGCTGTAAAGACGGTGTTAGCCGTAGCAGTACAGGAGGATTTACAAAA
GAAACCGTTGAGGGGGCAGTTCCTTTTTTCGTATAAAACTAACGACATGG
GAAATGTGGTAAAGGTCAAAGCAAGATTGGTAGCTGATGGAAGGACACAA
ATCCAAGGCATAGACTACGATGAAGGTTTTGCCCCTACCCCTTCCGCTGC
TGCTGTAAAGACGGTGTTAGCCGTAGCAGTACAGGAGGATTTACAA
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