mRNA_H-paniculata_contig59868.13643.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.750e-9 Identity = 38/115 (33.04%), Postives = 62/115 (53.91%), Query Frame = 3
Query: 231 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAIALPNWSDLLCRKIGKHDFL 572
W+ DSGATAHMTP +F+YE N+ VT+A+G+ + + G G + + D I + V H+PGLD L S+ + +G++V ++ I + + +K+GK L
Sbjct: 263 WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVIWYKSTAIASAKKVGKAYML 374
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 1.500e-8 Identity = 39/115 (33.91%), Postives = 60/115 (52.17%), Query Frame = 3
Query: 231 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAIALPNWSDLLCRKIGKHDFL 572
W+ DSGATAHMTP E +FDY+ +++ VT+A+G+ + + G G + + D I V H+PGLD L S+ + +GL V + I + +K+GK L
Sbjct: 160 WLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNVEFERTSCIIWNKKQATASGKKVGKAYIL 271
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 4.260e-8 Identity = 36/111 (32.43%), Postives = 62/111 (55.86%), Query Frame = 3
Query: 231 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAIALPNWSDLLCRKIGK 560
W+ DSGATAHMTP + +F+Y S +++VT+A+G+ + + G G + + D I + V ++PGLD L S+ + +G++V + I + + +KIGK
Sbjct: 245 WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSVGKLAERGMSVEFQRNSCVIWDKSKAVASGKKIGK 352
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: F2UPM9_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UPM9_SALR5) HSP 1 Score: 62.4 bits (150), Expect = 5.920e-8 Identity = 47/131 (35.88%), Postives = 67/131 (51.15%), Query Frame = 3
Query: 201 PVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGK-MLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVN--QGLTVCLKEEGAAIALPNWS-DLLCRKIGKHDFLVAT 581
PVP + W+ADSGATAH+T L+ +Y + VTVAN +T+ + G G +L T G +L V HVP + NL +L +V +G +V + + + I WS LL K H FL A+
Sbjct: 406 PVPP----QLWLADSGATAHITSDASLLTNYVAVTQ-HVTVANSQTVTVIGKGDAVLRVTGTDGAPGTITLKNVLHVPDIKYNLLALNLVTRARRGASVVIAADDSRIQFATWSVPLLPSKDTGHLFLYAS 531
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 6.770e-8 Identity = 37/115 (32.17%), Postives = 64/115 (55.65%), Query Frame = 3
Query: 231 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAIALPNWSDLLCRKIGKHDFL 572
W+ DSGATAHMTP +F+Y+ SN+ VT+A+G+ + + G G + + D I V ++PGLD L S++ + +G++V +++ I + + +K+GK L
Sbjct: 266 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVRRLAERGMSVEFQKKSCTIWNKSKAIASGKKVGKVGVL 377
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: A0A6A4BQ03_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BQ03_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 1.060e-7 Identity = 37/111 (33.33%), Postives = 62/111 (55.86%), Query Frame = 3
Query: 231 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAIALPNWSDLLCRKIGK 560
W+ DSGATAHMTP +F+Y+ SN+ VT+A+G+ + + G G + + D I V ++PGLD L S+ + +G++V +++ I + + +KIGK
Sbjct: 242 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLAERGMSVEFQKKSCTIWNKSKAIASGKKIGK 349
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: F2UPN0_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UPN0_SALR5) HSP 1 Score: 60.1 bits (144), Expect = 1.660e-7 Identity = 46/131 (35.11%), Postives = 66/131 (50.38%), Query Frame = 3
Query: 201 PVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGK-MLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVN--QGLTVCLKEEGAAIALPNWS-DLLCRKIGKHDFLVAT 581
PVP + W+ADSGATAH+T L+ +Y + VTVAN + + + G G +L T G +L V HVP + NL +L +V +G +V + + + I WS LL K H FL A+
Sbjct: 88 PVPP----QLWLADSGATAHITSDASLLTNYIAVTQ-HVTVANNQAVTVIGKGDAVLRVTGTDGAPGTITLKNVLHVPDIKYNLLALNLVTRARRGASVVIAADDSRIQFATWSVPLLPSKDTGHLFLYAS 213
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: F2UNK2_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UNK2_SALR5) HSP 1 Score: 60.8 bits (146), Expect = 1.820e-7 Identity = 46/131 (35.11%), Postives = 67/131 (51.15%), Query Frame = 3
Query: 201 PVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGK-MLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVN--QGLTVCLKEEGAAIALPNWS-DLLCRKIGKHDFLVAT 581
PVP + W+ADSGATAH+T L+ +Y + VTVAN +T+ + G G +L T G +L V HVP + N+ +L +V +G +V + + + I WS LL K H FL A+
Sbjct: 77 PVPP----QLWLADSGATAHITSDASLLTNYIAVTQ-HVTVANNQTVTVIGKGDAVLRVTGTDGAPGTITLKNVLHVPDIKYNILALNLVTRARRGASVVIAVDDSRIQFATWSVPLLPSKDTGHLFLYAS 202
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.970e-7 Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 3
Query: 231 WVADSGATAHMTPSNELMFDYE-TCSNLFVTVANGETLPIEGYGKMLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLT 485
W+ DSGAT+HMTP E +FD E T S++ VT+A+G+ L + G G + + + + I + V ++PGLD L S+ + +GLT
Sbjct: 155 WLIDSGATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAGQGTVRLTSLNGKHI---KMMEVLYIPGLDRRLLSVGKLAERGLT 237
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE) HSP 1 Score: 60.8 bits (146), Expect = 1.990e-7 Identity = 50/177 (28.25%), Postives = 76/177 (42.94%), Query Frame = 3
Query: 3 PGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTARVAG--QGEFASVIELIEEDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGK-MLVWTEDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAIALP 524
PGHL+ NC +++ K + SS SD + H T +A GE A W+ DSGA+AHMT +E ++T+A+G+ I G G +L + E+ + +S V +VPGL TNL S++ + + L V +G I P
Sbjct: 218 PGHLQRNC-RKLLEAKKEENNTSSSGTKPK--KSDSVKAKAVHSDTRGIAFVVNGENA------------------RSWIIDSGASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDVSFNSDGCRIIDP 373 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59868.13643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig59868.13643.1 >prot_H-paniculata_contig59868.13643.1 ID=prot_H-paniculata_contig59868.13643.1|Name=mRNA_H-paniculata_contig59868.13643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp MNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTARVAGQGEFback to top mRNA from alignment at H-paniculata_contig59868:284..864+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig59868.13643.1 ID=mRNA_H-paniculata_contig59868.13643.1|Name=mRNA_H-paniculata_contig59868.13643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=581bp|location=Sequence derived from alignment at H-paniculata_contig59868:284..864+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig59868:284..864+ >mRNA_H-paniculata_contig59868.13643.1 ID=mRNA_H-paniculata_contig59868.13643.1|Name=mRNA_H-paniculata_contig59868.13643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig59868:284..864+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |