mRNA_H-paniculata_contig5963.13609.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5963.13609.1
Unique NamemRNA_H-paniculata_contig5963.13609.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5963.13609.1 vs. uniprot
Match: A0A6H5JJT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJT3_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 2.600e-31
Identity = 68/125 (54.40%), Postives = 84/125 (67.20%), Query Frame = 2 
Query: 1268 RNLQEEECSAACLTHSTQTCYNDPDCATGGLGCNALDDPLCRFCGFEG-FGACPE-LPTNSPAATPAPTEVSNRQECSASCLTAKVLVCYDDPSCSI--GGLGCNARGDFYCRFCGF-DDFHDCP 1627
            R LQ E+CSA CLT  T+ C N+  C TGG+GCNA DDPLC+FC     +  C E  PT +PA +PAPT   +  ECS+ CL ++   C+DDPSC     G+GCNA GDFYCRFCGF ++F DCP
Sbjct:  188 RKLQLEDCSADCLTSETERCQNNEMCETGGIGCNAQDDPLCQFCDLGAPYVECDEERPTEAPAPSPAPTLDPDYVECSSRCLESEDFPCFDDPSCPRDGNGIGCNATGDFYCRFCGFLEEFVDCP 312
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BLAST of mRNA_H-paniculata_contig5963.13609.1 vs. uniprot
Match: D8LSN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN4_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 4.050e-29
Identity = 68/125 (54.40%), Postives = 84/125 (67.20%), Query Frame = 2 
Query: 1268 RNLQEEECSAACLTHSTQTCYNDPDCATGGLGCNALDDPLCRFCGFEG-FGACPE-LPTNSPAATPAPTEVSNRQECSASCLTAKVLVCYDDPSCSI--GGLGCNARGDFYCRFCGF-DDFHDCP 1627
            R LQ E+CSA CLT  T+ C N+  C TGG+GCNA DDPLC+FC     +  C E  PT +PA +PAPT   +  ECS+ CL ++   C+DDPSC     G+GCNA GDFYCRFCGF ++F DCP
Sbjct:  246 RKLQLEDCSADCLTSDTERCQNNEMCETGGIGCNAQDDPLCQFCDLGAPYVECDEERPTEAPAPSPAPTLDPDYVECSSRCLESEDFPCFDDPSCPRDGNGIGCNASGDFYCRFCGFLEEFVDCP 370
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BLAST of mRNA_H-paniculata_contig5963.13609.1 vs. uniprot
Match: R1CM16_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CM16_EMIHU)

HSP 1 Score: 59.3 bits (142), Expect = 1.400e-5
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 2 
Query: 1298 ACLTHSTQTCYNDPDCATGGLGCNALDDPLCRFCGFEGF 1414
            +C  +  +TC+ DP+CATGGLGC A   PLCRFCGF G+
Sbjct:  449 SCTGNPFETCFYDPNCATGGLGCAAGGKPLCRFCGFGGY 487
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5963.13609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JJT3_9PHAE2.600e-3154.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSN4_ECTSI4.050e-2954.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
R1CM16_EMIHU1.400e-558.97Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5963contigH-paniculata_contig5963:3992..7456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1821
Cds size1470
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5963.13609.1prot_H-paniculata_contig5963.13609.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5963 3992..7107 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930657.2528787-CDS-H-paniculata_contig5963:3991..49881622930657.2528787-CDS-H-paniculata_contig5963:3991..4988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5963 3992..4988 -
1691481392.4695268-CDS-H-paniculata_contig5963:3991..49881691481392.4695268-CDS-H-paniculata_contig5963:3991..4988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5963 3992..4988 -
1622930657.2698324-CDS-H-paniculata_contig5963:6634..71071622930657.2698324-CDS-H-paniculata_contig5963:6634..7107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5963 6635..7107 -
1691481392.4786015-CDS-H-paniculata_contig5963:6634..71071691481392.4786015-CDS-H-paniculata_contig5963:6634..7107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5963 6635..7107 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930657.2825367-UTR-H-paniculata_contig5963:7107..74561622930657.2825367-UTR-H-paniculata_contig5963:7107..7456Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5963 7108..7456 -
1691481392.4879038-UTR-H-paniculata_contig5963:7107..74561691481392.4879038-UTR-H-paniculata_contig5963:7107..7456Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5963 7108..7456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5963.13609.1

>prot_H-paniculata_contig5963.13609.1 ID=prot_H-paniculata_contig5963.13609.1|Name=mRNA_H-paniculata_contig5963.13609.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=490bp
MTRRGIEGSSRRRRLLPPCTAMIEAVAATLLLSCSAGLVRPAQASLAHLR
GEEISTSSPLPARLYTKEVFSTSDSACALACVNGGLAGGGGESACSRNAL
EMEIWVYGGIGARVVGAELEVWSVVEQDEDWLQLTTATDANLEVRYAIRP
ISSVVAEGGSVADGSSFTISVGVDLATASEFISLVLLLEGCGLISANILG
TAVSAIASVGRGDDDGHNEEWGGTNKESSSRVDEGLSLHQRKVGQGGDVV
GESTLLQLERKPLEHIGADGGLLRLKAAAGVVTERIGAAQVQQQPEPSRE
RKLRGSRNLQEEECSAACLTHSTQTCYNDPDCATGGLGCNALDDPLCRFC
GFEGFGACPELPTNSPAATPAPTEVSNRQECSASCLTAKVLVCYDDPSCS
IGGLGCNARGDFYCRFCGFDDFHDCPFTPTPATPAPVTVPTVAPGDVPTT
APLNLPTTAPLHLPTNPPLYLPTNPPLYLPTNPPLYLPTN
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mRNA from alignment at H-paniculata_contig5963:3992..7456-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5963.13609.1 ID=mRNA_H-paniculata_contig5963.13609.1|Name=mRNA_H-paniculata_contig5963.13609.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3465bp|location=Sequence derived from alignment at H-paniculata_contig5963:3992..7456- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACAGCGCATCCCTGAGAGGGAGAGGACAAAGGGTGGCGCAAGAATTGA
AGTGAGAGTAGGCAAATCTTCTTTGTATATTCAAGTCCGGCGGGAGGACC
GCTGCTGCTCTCCTTGTCGTCGGTTGTAGACAAGGCTGCTACGACTTGAA
CCCCCGCACCCGTCGTGCCCTTCAGCTGCCGTTGATTATGCTTCAGGACT
CTCCGCATACAAAAAACATTCGGTTTGTTAAATTTCAGGCACAGGTGCAG
CATCGCTTTTTCTCAGTGGTGGTCTGAACCCTTCTGGTAGGTGGACCGCA
CCGCGACCTTGGTCGACCACAAAGACGACGCCGGGGAAAGGAGTCCGTCA
TGACGAGAAGAGGAATAGAAGGATCATCGCGGCGGAGGAGACTCCTACCG
CCCTGCACCGCCATGATCGAGGCAGTAGCAGCGACATTGCTGCTGTCGTG
TTCAGCCGGTTTGGTTCGTCCTGCACAGGCATCTTTGGCTCATTTGAGAG
GAGAGGAGATTTCGACTTCTTCGCCTCTGCCGGCGAGACTGTACACGAAA
GAAGTATTTTCGACTAGCGATAGCGCGTGTGCGTTGGCTTGCGTGAATGG
AGGCCTGGCGGGCGGCGGCGGGGAGAGTGCATGCTCGCGAAATGCGCTGG
AGATGGAAATCTGGGTTTATGGCGGCATAGGCGCGAGAGTTGTTGGCGCG
GAGCTGGAAGTTTGGAGCGTCGTTGAGCAGGACGAGGATTGGTTACAGCT
CACGACCGCGACAGATGCGAATCTTGAAGTGCGCTATGCGATTAGACCAA
TCTCTAGTGTTGTTGCCGAAGGGTGAGTGGTAAATAGGGAGCGGTGCAAG
ACGGTCGTGCTTGCGAAGGGTGTTGTTTAAGTGGGCACGATGACCTTGCC
CCAGTTATTTGTACAACATGCTCGCAAAACTAGACCGGCAATGGCCATCC
ATCATTTGTCAACAGAAAAGTCATGAGTGAGACCAACCTCAGCCGCAGGT
CGTAGAACGGTAGTATGATAGTTACTAGTAAGTAGAGTGTAATGCTCGTT
GCCGTATTTGAAACTTATTTCCATTTTTTTCATTTTCCGTGCGCTAGTTG
CTGGCGGCTGCTGTACAGGACCGTTTGTTTATACAGCTCTCGTTCGGTGT
TATTTGCCGAAGAGGGCCTCTCCCCTTTTTAGATCACCCCACGTCTCGCG
TTGGGTTGCGGCTAGCTCAGGCAGTGCCTGCAGGCCGGGCCAATTACACA
AACACAGTCCCATCGCCCACGGAAGGTTTTGTTTTGTTTAATCTCTCCAA
CTTATTGTTCGATCTGACCACGGAAAAATTCGTGTTCGTGTGGTGTCAAG
TACGTTGCAGTTTTCGTCTGTATGGAGTGGGTGCATTTACTCACACGAAA
GGCAACTTGTCGCCAAATATCATGAGTAGCAGCACATGAATGTTGACATA
TGCGCAATGCCAGAGGTGTGTCTAGAATAACCCTCGCACGGGAGGGAGCG
GGAGAAACGGTTGCAATACAAAGTAACCCATTCTTCAGGGAAAACGGCAG
AAAAGCGCTCGCTCTTCCCAAAGGAAACCGGTTGCACCTGCGATAACAGT
TGGGATCTTGAGAGAGGGGCTGAATTCATATGAGTGCATGACATACCAGA
AAGCCATTGCGTGTGCCACAGAGTCTCTGTTTTTCGTCATGACCGTTAGC
GACGTGGCTTGTCAACGCACGTTAGCGCCGAGAATTTCAAAACGCCTGTC
CTCCTTCATAAATCTACTACTGCTCAAGCCGCTTTGCAGTGGATCTTTTT
GTGTTTTCACCGCAGTTTCGCAAGCAGTAGCCTTCAACACACCAACTACT
TGATGTGCTCACCCTTTCTTTTAGCAAGTGACGGGGGACCGAATTGAGAA
TAATGTGTGATCATTTTTTGAATTCGGCATGTCATCGTTTATTTTGTTGA
CTGGTCCGGTCCCTAAACTCACTTCACGACCGATGATGTTGAGGTTTACT
TGGATATATTCTGTGGTCCTATATTATGGTTGCATTTCCTCTGCGTGTTA
CAGGTCAAAAAGTGTCTGCGTACTCTCTGCACATTCAGGCGCTCAGGCGT
CTACTTTCAGAACTGAAATTCTGAATGAGAGATGCTGAGGTATCAGGTGT
ATAGTAGTTGATTGCTCCCAAATTTCTGAAAATCCACATTCCCGGGTCTT
TCAGTTGTCCACGATGTCTCGTTCAGGGTCAGAGGATCAGATGCCACCCT
CTTCGACTTATGAAATACGGTCAGTACGTATACCCTCGCCGTATGGAAGG
TTTTTCCCTCCGTGTTGAGAACGCAAGGTGTGCTGCTGCCCTTTGATGGT
CGATACCTGATGCTTTGAAGCCTAGTGCCTACTGTTTTGTATATTTTTAT
TTAATGGCATATTCGCTACTCTTTTTCGCTTCGCTTCTCATTTCTATTTG
TGGGTCGTGGGTGCTTAGTGGCAGCGTTGCGGACGGATCGTCCTTCACCA
TTAGCGTGGGCGTGGACCTAGCAACGGCTTCGGAGTTTATCTCGTTGGTC
CTCCTTCTCGAGGGTTGCGGCCTAATCTCTGCGAATATCCTGGGGACGGC
GGTGTCCGCGATTGCGTCGGTCGGTCGCGGTGACGATGATGGTCACAACG
AGGAGTGGGGGGGTACTAACAAGGAGTCGAGCAGCAGGGTGGATGAGGGT
TTATCTTTGCACCAGAGAAAAGTAGGACAGGGAGGAGACGTTGTGGGGGA
ATCGACATTGTTGCAGCTAGAGCGAAAACCGCTGGAACACATTGGCGCGG
ACGGTGGGTTGTTAAGACTCAAGGCTGCAGCGGGGGTTGTAACGGAGAGA
ATTGGAGCGGCGCAGGTGCAACAGCAGCCGGAGCCATCGCGGGAGCGAAA
GTTGAGAGGCAGCAGGAATTTGCAGGAAGAAGAGTGTAGTGCGGCGTGTC
TCACGCATAGCACTCAGACGTGCTACAATGACCCTGACTGCGCAACGGGT
GGACTGGGTTGCAACGCTCTCGACGACCCGCTCTGCCGGTTCTGTGGGTT
CGAGGGGTTCGGCGCGTGCCCAGAGCTGCCCACGAATTCGCCGGCGGCAA
CCCCGGCTCCGACCGAGGTCTCAAACCGCCAGGAATGCTCGGCCTCCTGC
CTGACCGCCAAGGTACTCGTTTGCTATGATGACCCATCGTGCAGCATCGG
GGGCTTGGGGTGCAACGCCCGCGGCGATTTCTACTGCCGTTTTTGCGGCT
TCGATGATTTCCACGACTGTCCGTTTACCCCGACTCCAGCAACTCCGGCT
CCAGTGACTGTGCCAACGGTCGCTCCGGGGGATGTGCCAACGACTGCTCC
TTTAAATCTGCCAACGACTGCCCCATTGCATCTGCCAACGAACCCTCCAT
TATATCTGCCAACGAACCCTCCATTATATCTGCCAACGAACCCTCCATTA
TATCTGCCAACGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig5963:3992..7456-

>mRNA_H-paniculata_contig5963.13609.1 ID=mRNA_H-paniculata_contig5963.13609.1|Name=mRNA_H-paniculata_contig5963.13609.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2940bp|location=Sequence derived from alignment at H-paniculata_contig5963:3992..7456- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGAGAAGAGGAATAGAAGGATCATCGCGGCGGAGGAGACTCCTACC
GCCCTGCACCGCCATGATCGAGGCAGTAGCAGCGACATTGCTGCTGTCGT
GTTCAGCCGGTTTGGTTCGTCCTGCACAGGCATCTTTGGCTCATTTGAGA
GGAGAGGAGATTTCGACTTCTTCGCCTCTGCCGGCGAGACTGTACACGAA
AGAAGTATTTTCGACTAGCGATAGCGCGTGTGCGTTGGCTTGCGTGAATG
GAGGCCTGGCGGGCGGCGGCGGGGAGAGTGCATGCTCGCGAAATGCGCTG
GAGATGGAAATCTGGGTTTATGGCGGCATAGGCGCGAGAGTTGTTGGCGC
GGAGCTGGAAGTTTGGAGCGTCGTTGAGCAGGACGAGGATTGGTTACAGC
TCACGACCGCGACAGATGCGAATCTTGAAGTGCGCTATGCGATTAGACCA
ATCTCTAGTGTTGTTGCCGAAGGATGACGAGAAGAGGAATAGAAGGATCA
TCGCGGCGGAGGAGACTCCTACCGCCCTGCACCGCCATGATCGAGGCAGT
AGCAGCGACATTGCTGCTGTCGTGTTCAGCCGGTTTGGTTCGTCCTGCAC
AGGCATCTTTGGCTCATTTGAGAGGAGAGGAGATTTCGACTTCTTCGCCT
CTGCCGGCGAGACTGTACACGAAAGAAGTATTTTCGACTAGCGATAGCGC
GTGTGCGTTGGCTTGCGTGAATGGAGGCCTGGCGGGCGGCGGCGGGGAGA
GTGCATGCTCGCGAAATGCGCTGGAGATGGAAATCTGGGTTTATGGCGGC
ATAGGCGCGAGAGTTGTTGGCGCGGAGCTGGAAGTTTGGAGCGTCGTTGA
GCAGGACGAGGATTGGTTACAGCTCACGACCGCGACAGATGCGAATCTTG
AAGTGCGCTATGCGATTAGACCAATCTCTAGTGTTGTTGCCGAAGGTGGC
AGCGTTGCGGACGGATCGTCCTTCACCATTAGCGTGGGCGTGGACCTAGC
AACGGCTTCGGAGTTTATCTCGTTGGTCCTCCTTCTCGAGGGTTGCGGCC
TAATCTCTGCGAATATCCTGGGGACGGCGGTGTCCGCGATTGCGTCGGTC
GGTCGCGGTGACGATGATGGTCACAACGAGGAGTGGGGGGGTACTAACAA
GGAGTCGAGCAGCAGGGTGGATGAGGGTTTATCTTTGCACCAGAGAAAAG
TAGGACAGGGAGGAGACGTTGTGGGGGAATCGACATTGTTGCAGCTAGAG
CGAAAACCGCTGGAACACATTGGCGCGGACGGTGGGTTGTTAAGACTCAA
GGCTGCAGCGGGGGTTGTAACGGAGAGAATTGGAGCGGCGCAGGTGCAAC
AGCAGCCGGAGCCATCGCGGGAGCGAAAGTTGAGAGGCAGCAGGAATTTG
CAGGAAGAAGAGTGTAGTGCGGCGTGTCTCACGCATAGCACTCAGACGTG
CTACAATGACCCTGACTGCGCAACGGGTGGACTGGGTTGCAACGCTCTCG
ACGACCCGCTCTGCCGGTTCTGTGGGTTCGAGGGGTTCGGCGCGTGCCCA
GAGCTGCCCACGAATTCGCCGGCGGCAACCCCGGCTCCGACCGAGGTCTC
AAACCGCCAGGAATGCTCGGCCTCCTGCCTGACCGCCAAGGTACTCGTTT
GCTATGATGACCCATCGTGCAGCATCGGGGGCTTGGGGTGCAACGCCCGC
GGCGATTTCTACTGCCGTTTTTGCGGCTTCGATGATTTCCACGACTGTCC
GTTTACCCCGACTCCAGCAACTCCGGCTCCAGTGACTGTGCCAACGGTCG
CTCCGGGGGATGTGCCAACGACTGCTCCTTTAAATCTGCCAACGACTGCC
CCATTGCATCTGCCAACGAACCCTCCATTATATCTGCCAACGAACCCTCC
ATTATATCTGCCAACGAACCCTCCATTATATCTGCCAACGAACTGGCAGC
GTTGCGGACGGATCGTCCTTCACCATTAGCGTGGGCGTGGACCTAGCAAC
GGCTTCGGAGTTTATCTCGTTGGTCCTCCTTCTCGAGGGTTGCGGCCTAA
TCTCTGCGAATATCCTGGGGACGGCGGTGTCCGCGATTGCGTCGGTCGGT
CGCGGTGACGATGATGGTCACAACGAGGAGTGGGGGGGTACTAACAAGGA
GTCGAGCAGCAGGGTGGATGAGGGTTTATCTTTGCACCAGAGAAAAGTAG
GACAGGGAGGAGACGTTGTGGGGGAATCGACATTGTTGCAGCTAGAGCGA
AAACCGCTGGAACACATTGGCGCGGACGGTGGGTTGTTAAGACTCAAGGC
TGCAGCGGGGGTTGTAACGGAGAGAATTGGAGCGGCGCAGGTGCAACAGC
AGCCGGAGCCATCGCGGGAGCGAAAGTTGAGAGGCAGCAGGAATTTGCAG
GAAGAAGAGTGTAGTGCGGCGTGTCTCACGCATAGCACTCAGACGTGCTA
CAATGACCCTGACTGCGCAACGGGTGGACTGGGTTGCAACGCTCTCGACG
ACCCGCTCTGCCGGTTCTGTGGGTTCGAGGGGTTCGGCGCGTGCCCAGAG
CTGCCCACGAATTCGCCGGCGGCAACCCCGGCTCCGACCGAGGTCTCAAA
CCGCCAGGAATGCTCGGCCTCCTGCCTGACCGCCAAGGTACTCGTTTGCT
ATGATGACCCATCGTGCAGCATCGGGGGCTTGGGGTGCAACGCCCGCGGC
GATTTCTACTGCCGTTTTTGCGGCTTCGATGATTTCCACGACTGTCCGTT
TACCCCGACTCCAGCAACTCCGGCTCCAGTGACTGTGCCAACGGTCGCTC
CGGGGGATGTGCCAACGACTGCTCCTTTAAATCTGCCAACGACTGCCCCA
TTGCATCTGCCAACGAACCCTCCATTATATCTGCCAACGAACCCTCCATT
ATATCTGCCAACGAACCCTCCATTATATCTGCCAACGAAC
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