mRNA_H-paniculata_contig5962.13608.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig5962.13608.1 vs. uniprot
Match: D7G0H9_ECTSI (Ankyrin repeat domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0H9_ECTSI) HSP 1 Score: 329 bits (843), Expect = 6.650e-108 Identity = 197/363 (54.27%), Postives = 225/363 (61.98%), Query Frame = 1
Query: 1 MADRAHLHRAAQRGDIGAVRALVQAVDVNIRGGWRVESPLHAASRAGRPEVIVCLMEAGAHTEVRDRNNDTPLLLAAWLGHALAVRKLLIAGARVDAEGIPRSALHCACMQGHADCVRELLRGGADETSKDEDGNTPSQVVGTMSEAAGRTEDLVTIRQMLENAPSDRAWSRRGWLIVLRARECAAAFARPFP-PLPPTVMTRSATKAVAN--AEVAGGSGVIHNMNTVPTMPQLGLVLKQPTPKRAKTKQAVQRKAMIAVTGRTRGGKAAGQGNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWGAARASSKEIDESEEDRLKLIRLVKRVLGLGEEGAFRSVVGFL 1080
MADR HLHRAAQRGDIGAVRALVQAVDVN+RGGWRVESPLHAASRAG+P+VI CL+ AGAHTEVRDRNNDTPLLLAAWLGHA A+ KLL +GARVDA+GIPRSALHCACMQGHA CV ELLRGGADET +DEDGN+P+QV+GTMSE+ R ED+V IR+ML AP+DRAW RRGWL++LR R+C AA P P P TV TRSA + A A GGS I T P + G L + + +K G T G G G + G A S +E R L LV R++GLGEEGAFR V+ FL
Sbjct: 1 MADRTHLHRAAQRGDIGAVRALVQAVDVNLRGGWRVESPLHAASRAGKPDVIACLVGAGAHTEVRDRNNDTPLLLAAWLGHATAIAKLLASGARVDADGIPRSALHCACMQGHAACVSELLRGGADETVEDEDGNSPAQVIGTMSESLERAEDIVLIREMLRRAPADRAWRRRGWLVMLRNRDCVAAGLLPSARPPPTTVTTRSAARRGARVWAIDGGGSRSIAGAATSPGFFE-GQGLTTGHIRNHHQLKVHGKKKSFGAPGVTVAGSRGGGGKAPRSRRSPSAGGSSGSGSFCPPGKGHVSSNKKRPRGAAKRRVGKRGRGGAES---EEELAGRQALASLVARLIGLGEEGAFRCVLSFL 359
BLAST of mRNA_H-paniculata_contig5962.13608.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 3.560e-19 Identity = 76/182 (41.76%), Postives = 99/182 (54.40%), Query Frame = 1
Query: 28 AAQRGDIGAVRALVQ-AVDVNIR-GGWRVESPLHAASRAGRPEVIVCLMEAGAHTEVRDRNNDTPLLLAAWLGHALAVRKLLIAGARVDAEGIPRS-----ALHCACMQGHADCVRELLRGGADETSKDEDGNTPSQVVGTMSEAAG---RTEDLVTIRQMLENAPSDRAWSRRGWLIVLRA 543
AAQ+GD +RA++Q VDVN R G+ + LH A+ R I L+EAGAH EV D ++ TP L A A L GA ++A + A A QG V LLR GADET+ + DG T ++VVG E A +DL +R +LENAP+DRAW RRG L++ RA
Sbjct: 163 AAQKGDACVLRAILQHGVDVNRRTDGY---TSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACSNHCHEAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLCRA 341
BLAST of mRNA_H-paniculata_contig5962.13608.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI) HSP 1 Score: 97.8 bits (242), Expect = 7.360e-19 Identity = 79/189 (41.80%), Postives = 105/189 (55.56%), Query Frame = 1
Query: 19 LHRAAQRGDIGAVRALVQ-AVDVNIR-GGWRVESPLHAASRAGRPEVIVCLMEAGAHTEVRDRNNDTPLLLAAWLGH----ALAVRKLLIAGARVDAEGIPRS-----ALHCACMQGHADCVRELLRGGADETSKDEDGNTPSQVVGTMSEAAG---RTEDLVTIRQMLENAPSDRAWSRRGWLIVLRA 543
L AAQ+GD +RA++Q VDVN R G+ + LH A+ R I L+EAGAH EV D ++ TP L A + H ALA+ K G+ ++A I A A QG V LLR GADET+ + DG T ++VVG E A +D+ +R +LENAP DRAW RRG+L++ RA
Sbjct: 111 LDLAAQKGDACVLRAILQHGVDVNRRTDGY---TSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFL-DACINHCHEAALALYKH---GSNIEARDIRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVLCRA 292
BLAST of mRNA_H-paniculata_contig5962.13608.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 1.540e-14 Identity = 69/194 (35.57%), Postives = 101/194 (52.06%), Query Frame = 1
Query: 13 AHLHRAAQRGDIGAVRALVQ-AVDVNIRG----GWRVESPLHAASRAGRPEVIVCLMEAGAHTEVRDRNN----DTPLLLAAWLGHALAVRKLLIAGA---RVDAEGIPRSALHCACMQ---GHADCVRELLRGGADETSKDEDGNTPSQVVGTMS-EAAGRTEDLVTIRQMLENAPSDRAWSRRGWLIVLRAR 546
A ++ A Q G +G ++A ++ VD + + GW + LH A+ + E + L+EAGA +V DTPLL AA A+R LL GA + D G LH A + G + V LLR GA ET+ ++ GNTP++V ++ TE+ +L AP+DRAW RRGW+++LRAR
Sbjct: 169 AEINVATQLGHVGVIKAFLEHGVDASSQACPASGW---TALHQAALDNQAEAVEVLLEAGADADVESLPGSPCYDTPLLAAAESMSNEALRVLLRNGADPNKPDDNG--SMPLHLAAHEQTPGVMEVVDLLLRWGASETAVNKHGNTPAEVFQRLAIHRPDATEERAGALVLLARAPADRAWRRRGWVVMLRAR 357
BLAST of mRNA_H-paniculata_contig5962.13608.1 vs. uniprot
Match: D8LCR2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR2_ECTSI) HSP 1 Score: 80.5 bits (197), Expect = 4.110e-13 Identity = 62/165 (37.58%), Postives = 82/165 (49.70%), Query Frame = 1
Query: 112 SPLHAASRAGRPEVIVCLMEAGAHTEVRDRN-------------NDTPLLLAAWLGHALAVRKLLIAGARVDAEGIPR---SALHCACMQGH----ADCVRELLRGGADETSKDEDGNTPSQVVGTMSEAAGRTEDLVTIRQMLENAPSDRAWSRRGWLIVLRAR 546
S LH A R GR +V+ L+E GA E R TPL AA+ G+ + LL G R +A S LH CM A C LLR GADET+ DED +TP+ ++ + G ++Q+L NAP+DRAW RRG L++LRA+
Sbjct: 196 SALHWAVRDGRSDVVDALIEVGADVEARTSRMISYYSDGGHCMKGMTPLHEAAYQGNYPGMLVLLQKG-RANANAQDEHGHSPLHILCMNPQVCSAAACSDILLRSGADETATDEDRHTPADIMASSEGHNG------WLQQLLANAPADRAWRRRGTLVMLRAQ 353
BLAST of mRNA_H-paniculata_contig5962.13608.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 3.760e-12 Identity = 64/210 (30.48%), Postives = 97/210 (46.19%), Query Frame = 1
Query: 28 AAQRGDIGAVRALVQA-VDVNIRGGWRVE-------------------------------SPLHAASRAGRPEVIVCLMEAGAHTEVRDRNNDTPLLLAAWLGHAL-AVRKLLIAGARVDAEGIPRSALHCACMQ---GHADCVRELLRGGADETSKDEDGNTPSQVVGTMSEAAGR-TEDLVTIRQMLENAPSDRAWSRRGWLIVLRAR 546
A+QRG + V+ L+ A DV++R G R + LHA + + L++AGA + + TPL +A G ++ AV LL G +V + ++ LH ACM G V LLR G E + D+ GNTP+ ++ ++ R ++ +L NAP+DRAW RR WL++LRAR
Sbjct: 211 ASQRGHLSTVKTLLNAGADVSMRTGHRNSXXXXXXXXXXXXXXXXXXXXXXXVNASKHGYTALHAGCAMNQAGAMDVLLDAGADMDRKCYGASTPLCVAIEFGASVQAVHTLLRRGCQVSGP-MDKTMLHLACMTMAPGFDAIVDLLLRWGVSELTLDKGGNTPAALLSVAEGSSSRKAREVERAHVLLANAPADRAWRRRSWLVMLRAR 419
BLAST of mRNA_H-paniculata_contig5962.13608.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 2.810e-11 Identity = 57/148 (38.51%), Postives = 81/148 (54.73%), Query Frame = 1
Query: 118 LHAASRAGRPEVIVCLMEAGAHTEVRDRNNDTPLLLAAWLGHALAVRKLLIAGARVDAEGIP-RSALHCACMQ----GHADCVRELLRGGADETSKDEDGNTPSQVVGTMSEAAGR-TEDLVTIRQMLENAPSDRAWSRRGWLIVLRA 543
L AS + I L EAGA+ E + N TPL +A+ G A LL GA V + ++ LH + G A+ V LLR GADET+ E+G+T + +V +E + ED+ +R++L AP+DRAW RRG+LI+ RA
Sbjct: 561 LRVASAFDKAPAIDVLTEAGANIEAQ-ANGSTPLHVASQEGRLAAGIALLRHGASVGKKNAAAQTPLHLVAAKAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVVLKTEESDSLAEDVDRVRKLLARAPADRAWRRRGFLILSRA 707
BLAST of mRNA_H-paniculata_contig5962.13608.1 vs. uniprot
Match: Q8QNP0_ESV1K (EsV-1-21 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP0_ESV1K) HSP 1 Score: 74.7 bits (182), Expect = 5.280e-11 Identity = 66/186 (35.48%), Postives = 89/186 (47.85%), Query Frame = 1
Query: 19 LHRAAQRGDIGAVRALVQAVDVNIR---GGWRVESPLHAASRAGRPEVIVCLMEAGAHTEVRDRNNDTPLLLAAWLGHALAVRKLLIAGARVDAEG--IPRSALHCACMQ--GHADCVRELLRGGADETSKDEDGNTPSQVV--GTMSEAAGRTEDLVTIRQMLENAPSDRAWSRRGWLIVLRARE 549
LH AA G V L+ D ++R + +PL ++ V L+EAGA+ D+ ++ L +W LL GA V+A G SALH A V LLR GADET D+ G TP V GT + T++ V R++L NAP+DR W RRGWL++L RE
Sbjct: 300 LHAAASGGHNDVVNYLL---DNSVRIDPDDKNMMTPLMWSAMKNHLCVSATLLEAGANASAEDQMGESSLSSDSWSCSVDMALLLLRYGADVNASGGLFGSSALHNAIKNRDNTEAMVDLLLRWGADETVVDDRGRTPLDVFTSGTRFQRTAETKERV--RKLLVNAPADRTWRRRGWLVMLWERE 480
BLAST of mRNA_H-paniculata_contig5962.13608.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 6.760e-11 Identity = 57/156 (36.54%), Postives = 77/156 (49.36%), Query Frame = 1
Query: 109 ESPLHAASRAGRPEVIVCLMEAGAHTEVRDR--NNDTPLLLAAWLGHALAVRKLLIAGARVDAEGIPRS-ALHCACMQGHA------DCVRELLRGGADETSKDEDGNTP-SQVVGTMSEAAGRTEDLVTIRQMLENAPSDRAWSRRGWLIVLRAR 546
+SPLH A+ RP+ + L++AGA+ R +N A+ LL GARVD + S ALH A GHA D V LLR GA E + DE+ TP ++ E +L ++L AP+DRAW RRGWL++L R
Sbjct: 274 QSPLHWAAGHNRPDCVAVLLDAGANINGRCNFLDNHXXXXXXXXXXXXEALLALLSRGARVDEKTDDGSTALHLA---GHARGYKVDDTVDTLLRWGASEQAVDENDETPVDRLTEVAREVVWEWPELDRALELLARAPADRAWRRRGWLVMLHER 426
BLAST of mRNA_H-paniculata_contig5962.13608.1 vs. uniprot
Match: D8LQI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI9_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 7.200e-11 Identity = 58/167 (34.73%), Postives = 85/167 (50.90%), Query Frame = 1
Query: 97 GWRVESPLHAASRAGRP-----EVIVCLMEAGAHTEVRDRNND----TPLLLAAWLGHALA---VRKLLIAGARVDAEGI-PRSALHCACMQGHADCVRELLRGGADETSKDEDGNTPSQVV-----GTMSEAAGRTEDLVTIRQMLENAPSDRAWSRRGWLIVLRA 543
GW + LH A+ P + + L+ AGA +V + NN+ TPL +A G ++ VR LL G+ + A + ++ LH AC V LLR GADE + G TP+ V+ + R D IR+MLE+AP+DR+W RRGWL++ R+
Sbjct: 117 GW---AALHYAAVVDGPVRDNGDAVRVLLGAGA--DVNETNNNDSCFTPLHIAVN-GRKVSDGTVRALLEGGSNIHARALLDQTPLHIACKHASVTGVELLLRWGADEKLTNNVGKTPADVIRPRRQNDFDDEEEREADNQRIRRMLEHAPADRSWRRRGWLVLSRS 277 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5962.13608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5962.13608.1 >prot_H-paniculata_contig5962.13608.1 ID=prot_H-paniculata_contig5962.13608.1|Name=mRNA_H-paniculata_contig5962.13608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=361bp MADRAHLHRAAQRGDIGAVRALVQAVDVNIRGGWRVESPLHAASRAGRPEback to top mRNA from alignment at H-paniculata_contig5962:6240..7322+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5962.13608.1 ID=mRNA_H-paniculata_contig5962.13608.1|Name=mRNA_H-paniculata_contig5962.13608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1083bp|location=Sequence derived from alignment at H-paniculata_contig5962:6240..7322+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5962:6240..7322+ >mRNA_H-paniculata_contig5962.13608.1 ID=mRNA_H-paniculata_contig5962.13608.1|Name=mRNA_H-paniculata_contig5962.13608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2166bp|location=Sequence derived from alignment at H-paniculata_contig5962:6240..7322+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |