mRNA_H-paniculata_contig594.13574.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: D7FNR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR3_ECTSI) HSP 1 Score: 305 bits (781), Expect = 1.140e-93 Identity = 187/437 (42.79%), Postives = 240/437 (54.92%), Query Frame = 1
Query: 328 FVITLERAVVGTKVDTNCDEELWSSDVFDAEVHPHVPPARTLPGLLVKYTQRVMGVLGAWHCNERMTSA----------------CTAKHPKPAESGYLVRSVPIQTSGKEGIRRRLADAAGVDSEGLQLKATRPADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRAL---EGVQDEAQAKNENAVSATINHRVASNGKG---------------------AKLIVGMPVITSRSGLGFWLELCGVDKCDRICKEAFETFENPKTLTTASRAECAVSSTSTELDAISGVKTAHSNITEGPHQNGGTDTHVELKV----SRYGRAWFETTLLKLRDLDH--LGVAGIHVMCPGPGPRRRVKELMDDGVFN 1500
FV+TLER+VV DT D LW S VFDAE+HP +PPA T+ GL Y +R + + S+ C AK E GYLVR+VP+Q S ++ +RRRLA AAGVD+EG +++ RPADALL++SGSHP RRLP K DV D ++LA+SMR+ G LPKGL +WAVANPL EA EAG++R+R+KVELGAEVILTQPPLAWE FERWL+ +HAS AL ++ K AT+ S G A+++VG+PVITS GL FWL+LCG+ +CK+ FE F P ++ + +E PH + + S YG+ W ETT+LKL+ LD LGVAG+H+M PG PRRR EL G F
Sbjct: 48 FVVTLERSVV---TDTE-DGALWKSGVFDAEIHPDLPPAGTMAGLARCYLRRAKAAVFEMRPDGNSDSSSEGEKAAGSDTDTVGRCVAKEGN--EGGYLVRTVPVQLSRQKELRRRLAVAAGVDAEGAKVRNVRPADALLLVSGSHPGRRLPFAKSFLPDVYDELRLATSMRNSGRLPKGLALWAVANPLAEADEAGVDRVRKKVELGAEVILTQPPLAWELFERWLQGVHASGALGRSAAARNAGLTKPGEGTDATVKIFETSGSTGEERSTRHPLAAAEGRRGGDPAARILVGLPVITSPKGLRFWLDLCGLHDKPGVCKQVFEAFGQPSSVVARTGSE-------------------------EPHAHPAGEKQATAVAGSPPSPYGQEWLETTMLKLKSLDGSGLGVAGVHLMAPGRAPRRRAIELAATGFFG 453
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: A0A6H5L748_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L748_9PHAE) HSP 1 Score: 297 bits (761), Expect = 9.930e-91 Identity = 183/435 (42.07%), Postives = 239/435 (54.94%), Query Frame = 1
Query: 328 FVITLERAVVGTKVDTNCDEELWSSDVFDAEVHPHVPPARTLPGLLVKYTQRVMGVLGAWHCNERMTSACTAKHPKPA--------------ESGYLVRSVPIQTSGKEGIRRRLADAAGVDSEGLQLKATRPADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRALEG---VQDEAQAKNENAVSATINHRVASNGKG---------------------AKLIVGMPVITSRSGLGFWLELCGVDKCDRICKEAFETFENPKTLTTASRAECAVSSTSTELDAISGVKTAHSNITEGPHQNGGTDTHVELKV----SRYGRAWFETTLLKLRDLDH--LGVAGIHVMCPGPGPRRRVKELMDDGVFN 1500
FV+TLERAVV DT D LW S VFDAE+HP +PPA T+ GL+ Y +R + + S+ + + E GYLVR+VP+Q S ++ R A A GVD+EG ++ RPADALL++SGSHP RRLP K +DV D ++LA+SMR+ G LPKGL +WAVANPLTE EAG++R+R+KVELGAEVILTQPPLAWE FERWL+ +H S AL G +++ AK AT+ AS G A+++VG+PVIT+ GL FWL LCG+ +CK+AFE F +P ++ + TE PH + + S YG+ W ETT+LKL+ LD LGVAG+H+M PG PRRR +L G F
Sbjct: 48 FVVTLERAVV---TDTE-DGTLWKSGVFDAEIHPDLPPAGTMAGLVRYYLRRAKAAVFEMRPDRNSDSSSKGEKSTGSDTDTVGRSVARDGIEGGYLVRTVPVQLSRQKA--RDAACADGVDAEGAKVPNVRPADALLLVSGSHPGRRLPFAKSFLMDVYDELRLATSMRNSGHLPKGLALWAVANPLTEVDEAGIDRVRKKVELGAEVILTQPPLAWELFERWLQGVHTSGALGGSAAARNDGLAKPGEGTDATMKMFEASGSTGEERSTRRPTAAAEGQRGGDSTARILVGLPVITAPKGLRFWLNLCGLHDNPGVCKQAFEAFGHPSSVVARTG-------------------------TEEPHGHPAGEKQASAVAGSTPSPYGQEWLETTMLKLKSLDGSGLGVAGVHLMAPGRAPRRRAIQLAAAGFFG 451
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: A0A8J9WJA9_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WJA9_9CHLO) HSP 1 Score: 144 bits (364), Expect = 1.330e-34 Identity = 101/271 (37.27%), Postives = 133/271 (49.08%), Query Frame = 1
Query: 331 VITLERAVVGTKVDTNCDEELWSSDVFDAEVHPHVPPARTLPGLLVKYTQRVMGVLGAWHCNERMTSACTAKHPKPAESGYLVRSVPIQTSGKEGIRRRLADAAGVDSEGLQLKATRPADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRALEGVQDEAQAKNENAVSATINHRVASNGKGAKLIVGMPVITSRSGLGFWLELC 1143
V+TLER G D +LW + FD V+P +P L R G L R+ SA + G LVR+ +Q G E +RRRL AG++ +G RPADALL++SGSHPLRR D + LA S+RD+GLLP ++WAVANPL + + L +KV GAEVILTQPPL + FE W +GV VAS AK+++G+P++TS + FWLELC
Sbjct: 39 VLTLER---GIGAHLGKDTKLWGTGSFDVGVYPDLPAVMKWSDFLDFKKLRKTGKLQDLE-KLRIESAAGGRE------GLLVRTCGVQLRGHEQLRRRLLLRAGLEEDGRSAAGVRPADALLLVSGSHPLRRALAWSGVLQDSVSALHLAHSLRDQGLLPPQTSLWAVANPLVDTPDT----LERKVAAGAEVILTQPPLIYSKFESW---------FDGVD---------------RLGVASK---AKIVIGIPMLTSSRSMLFWLELC 268
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: A0A2P6TC01_CHLSO (Ribonuclease Z n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TC01_CHLSO) HSP 1 Score: 145 bits (366), Expect = 1.340e-32 Identity = 101/273 (37.00%), Postives = 137/273 (50.18%), Query Frame = 1
Query: 331 VITLERAVVGTKVDTNCDEELWSSDVFDAEVHPHVPPARTLPGLLVKYTQRVMGVLGAWHCNERMTSACTAKHPKPAESGYLVRSVPIQTSGKEGIRRRLADAAGVDSEGLQLKATRPADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRALEGVQDEAQAKNENAVSATINHRVASNGKGAKLIVGMPVITSRSGLGFWLELCGV 1149
++TLERAV G K D LW S F A+V+P +P A T LL + T + G + +AC PAE + VR+V Q ++ +R + AAGV +G ADALL +SGSHP RRLP R D + LAS+MR+ G LP L++WAV NP+ ++RL+QK ++GAEV+LTQPPL WE W + A R E + K+++G+PV+ S L FWL LCGV
Sbjct: 831 LLTLERAV-GEK--HGVDGNLWDSCRFGAQVYPDLPLASTWRDLL-RRTVQTAGRAAEPGSVDPPPAAC------PAER-WTVRTVAAQLRSRDQLRSMMLSAAGVGPDGEPRPGAARADALLFVSGSHPARRLPGAGRWLQSSFDLLLLASAMREEGYLPPALSLWAVENPMLSP----VDRLQQKADVGAEVVLTQPPLLWERTAAWAEEAAARRVSEHI---------------------------KVVLGLPVVPSVGNLDFWLRLCGV 1061
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: A0A2P6VAW2_9CHLO (5,10-methylenetetrahydrofolate reductase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VAW2_9CHLO) HSP 1 Score: 136 bits (342), Expect = 2.130e-31 Identity = 98/277 (35.38%), Postives = 131/277 (47.29%), Query Frame = 1
Query: 334 ITLERAVVGTKVDTNCDEELWSSDVFDAEVHPHVPPARTLPGLLVKYTQRV-----MGVLGAWHCNERMTSACTAKHPKPAESGYLVRSVPIQTSGKEGIRRRLADAAGVDSEGLQLKATRPADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRALEGVQDEAQAKNENAVSATINHRVASNGKGAKLIVGMPVITSRSGLGFWLELCGV 1149
+TLERAV G K D+ LW S F AE++P +P A T LL + Q G +G AC PAE + VR+V Q ++ +R + AAGVD+ G ADALL +SGSHP R LP + D + LAS+MR+ G LP L++WAV NP+ + RL +K+E GAEVI+TQPPL W W R + V K+++G+P++ S L FWL LCGV
Sbjct: 72 LTLERAV-GDK--HGIDQNLWDSCHFRAEIYPDLPLATTWRDLLRRTVQTAGRDSEAGWVGP------AAQAC------PAER-WTVRTVAAQLRSRDQLRAMMLSAAGVDASGDPKPGGSSADALLFVSGSHPARHLPGATKWLQSSFDLLLLASAMREEGYLPPSLSLWAVENPMLSP----VSRLDKKIENGAEVIITQPPLLWNRTALWFEQADKQRLSQNV---------------------------KVVLGLPIVPSVGNLEFWLRLCGV 301
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: A0A1D2A210_AUXPR (Uncharacterized protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A210_AUXPR) HSP 1 Score: 135 bits (341), Expect = 2.310e-31 Identity = 105/295 (35.59%), Postives = 136/295 (46.10%), Query Frame = 1
Query: 328 FVITLERAVVGTKVDTNCDEELWSSDVFDAEVHPHVPPARTLPGLLVKYTQRVMGVLGAWHCNERMTSACTAKHPKPA-------ESGYLVRSVPIQTSGKEGIRRRLADAAGVDSEGLQLKATRPADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRALEGVQDEAQAKNENAVSATINHRVASNGKGAKLIVGMPVITSRSGLGFWLELCGVDKCDRICKEAFETF 1191
++TLER V + DEELW S F A V P +PPA TL L + + L H E T+A A PA VRSV Q +E +RRR+A AA SEG PA ALL++SG HP+R LP++ + ++ A + R RG LP +WAVANP +E L RL KVE GA +LTQPPL W W+ E A + HR A++++G+P+ITSRS L FWL L G D + F
Sbjct: 59 LLLTLERKVGR---EAGSDEELWRSGAFGAGVVPDLPPATTLRQLAAQALR-----LPGGHVAESPTTAPPATCRAPAGLTPQQPPGCITVRSVAAQLRSREDLRRRMA-AAVAGSEGHP-----PAQALLLLSGGHPVRTLPIVPHFLGNSLSMLRDAGTARSRGELPADTRLWAVANPGSET----LRRLAAKVEAGASTVLTQPPLLWRRSREWM--------------------ERAAENGLTHR-------ARIVLGVPLITSRSNLEFWLFLIGAGAGDEEAAQLLADF 308
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: A0A383W723_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W723_TETOB) HSP 1 Score: 126 bits (316), Expect = 1.080e-27 Identity = 98/294 (33.33%), Postives = 137/294 (46.60%), Query Frame = 1
Query: 337 TLERAVVGTKVDTNCDEELWSSDVFDAEVHPHVPPARTLPGLLVKYTQRVMGVLGAWHCNERMTSACTAKHPKPAESGYL---------------------VRSVPIQTSGKEGIRRRLADAAGVDSEGLQLKAT--RP-ADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRALEGVQDEAQAKNENAVSATINHRVASNGKGAKLIVGMPVITSRSGLGFWLELCG 1146
TLE +V D +L ++ F AEVHP +P A T GL + + R+ G R A AK A + + V +V Q S I + AAGV G++ +A+ RP ADALL++SGSHP+R LPLL++ ++ AS ++ RG+LP+ L +WAVANP+ E + E QKV GA+VILTQPPL W FE W+ D R L A+L+VG P+++S + + FW LCG
Sbjct: 50 TLEASVGSAN---QLDLDLLATGAFGAEVHPDLPIATTWHGLYKQISSRLQGTA------RRDALAAAAKAQSKAAAVQMMADIASCEEAMDSQGLKPVLHVATVGAQLSSMADISDAMCTAAGVTPSGVRREASEHRPHADALLLVSGSHPVRTLPLLQQFLPGSVAMLRQASQLKQRGVLPQQLQLWAVANPVMEPDASYTE---QKVAAGAQVILTQPPLDWARFEAWMEDARR-RQLHSA--------------------------ARLLVGFPLLSSAANVTFWGALCG 304
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: A0A061R353_9CHLO (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R353_9CHLO) HSP 1 Score: 116 bits (290), Expect = 1.890e-25 Identity = 70/194 (36.08%), Postives = 103/194 (53.09%), Query Frame = 1
Query: 565 SGYLVRSVPIQTSGKEGIRRRLADAAGVDSEGLQLKATRPADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRALEGVQDEAQAKNENAVSATINHRVASNGKGAKLIVGMPVITSRSGLGFWLELCG 1146
S +LVR+V +Q + + + A + +G A+ALL +SGSHP+R+L ++ R D + +A M+ RG LP L +WAV NPL E ++A +RLR+K+E GAEV++TQPPL W+ F+RW D LE Q L+VG+P+++S L FWL+LCG
Sbjct: 22 SRWLVRTVGVQCRSRRELGEHILRQAFGNDDG-DADQIGAANALLCVSGSHPVRQLSIMGRLLPSSLDTLAMAGEMKARGNLPGSLRLWAVENPLLE-YDA--QRLRRKIEAGAEVVVTQPPLDWDSFQRWADDADRLGLLEQCQ---------------------------LVVGLPMLSSAGNLAFWLQLCG 184
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: A0A835YF65_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YF65_9CHLO) HSP 1 Score: 118 bits (296), Expect = 3.810e-25 Identity = 95/292 (32.53%), Postives = 131/292 (44.86%), Query Frame = 1
Query: 328 FVITLERAVVGTKVDTNCDEELWSSDVFDAEVHPHVPPARTLPGLLVKYTQRVMGVLGAWHCNERMTSACTAKHPKPAESGYLVRSVPIQTSGKEGIRRRLA------DAAGVDSEGLQLKATRPADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRALEGVQDEAQAKNENAVSATI-------------NHRVASNGKGAKLIVGMPVITSRSGLGFWLELCG 1146
+ +TLER G + + EL SS F AEV P +P A T L + + G+ + A H V +V + I R+ DAA EG Q + A ALL +SGSHP+R LPL+ F D +++A+ +R G +P +WAVANP TE LER KVELGA+V+LTQPPL WE + WL D L + A + +A ++ + GA+L+VG P+ +S L FWL L G
Sbjct: 46 WTLTLER---GMGKEYGKEAELQSSGAFAAEVFPDLPIATTWQNL-------IKALSGSLRASATADPAPPFTHFTTRPGAAKVVTVAANLRSEADIEARIRSACAGPDAAAQGPEGAQ--GPQRARALLCVSGSHPVRSLPLVPSLFRSSLDTLRIATRLRAAGAIPPDTQLWAVANPNTERGAGLLER---KVELGAQVVLTQPPLDWEAYLAWLGDAERRGLLLPALPSSSAPSPSAPASEAAGADXXXXXXXXXXXTPSPTDAGARLLVGHPMASSAGNLSFWLALSG 322
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Match: A0A7S0S575_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S575_9CHLO) HSP 1 Score: 115 bits (288), Expect = 3.460e-24 Identity = 93/278 (33.45%), Postives = 124/278 (44.60%), Query Frame = 1
Query: 313 HQQSNFVITLERAVVGTKVDTNCDEELWSSDVFDAEVHPHVPPARTLPGLLVKYTQRVMGVLGAWHCNERMTSACTAKHPKPAESGYLVRSVPIQTSGKEGIRRRLADAAGVDSEGLQLKATRPADALLIMSGSHPLRRLPLLKRAFLDVNDGIKLASSMRDRGLLPKGLTIWAVANPLTEAHEAGLERLRQKVELGAEVILTQPPLAWEPFERWLRDMHASRALEGVQDEAQAKNENAVSATINHRVASNGKGAKLIVGMPVITSRSGLGFWLELCG 1146
H + F++TLER V T + D +L ++ F A+V P +P A T L + MG A TS K A V +V + I +R+ A G RPADALL+++GSHPLR LP +R ++LAS ++ RG++P +WAVANP +E G +KV GA V+LTQPPL FE WLRD R L G+ A+L+VG P TS S FW L G
Sbjct: 75 HAGTGFLLTLERTVGAT---SGADTDLVTTGAFGAQVFPDLPAATTWANLW-----KSMGSSAA-------TSQDEDKGSDVAPDSLKVITVAANLRSMQEIEQRMVAATTAGPSG------RPADALLLVTGSHPLRTLPGSRRLLPTSLATLELASQLKARGVIPAATQLWAVANP---NNEQGAGLAAEKVARGASVLLTQPPLDAGAFEAWLRDADR-RGL--------------------------GRQARLVVGHPWFTSASNAAFWGALAG 301 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig594.13574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig594.13574.1 >prot_H-paniculata_contig594.13574.1 ID=prot_H-paniculata_contig594.13574.1|Name=mRNA_H-paniculata_contig594.13574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=474bp MPVWKFLYVLALLNDSLSLFVTNVRMMLMVLSPQSSRRCVALSRLMTVRTback to top mRNA from alignment at H-paniculata_contig594:18647..21876+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig594.13574.1 ID=mRNA_H-paniculata_contig594.13574.1|Name=mRNA_H-paniculata_contig594.13574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3230bp|location=Sequence derived from alignment at H-paniculata_contig594:18647..21876+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig594:18647..21876+ >mRNA_H-paniculata_contig594.13574.1 ID=mRNA_H-paniculata_contig594.13574.1|Name=mRNA_H-paniculata_contig594.13574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2844bp|location=Sequence derived from alignment at H-paniculata_contig594:18647..21876+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |