mRNA_H-paniculata_contig59343.13567.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: A0A7M5XDS1_9CNID (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XDS1_9CNID) HSP 1 Score: 67.4 bits (163), Expect = 3.860e-12 Identity = 29/65 (44.62%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 1 VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVD 195
++ K N++++F M D G ++ +LG+ VRRDR G I I Q +Y+R VL+R+G DECR + TP++
Sbjct: 71 LEREKKNLAEKFDMVDQGEINYILGMRVRRDRQAGIIRIDQSAYLRNVLQRFGMDECRPISTPME 135
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA) HSP 1 Score: 67.8 bits (164), Expect = 1.110e-11 Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = 1
Query: 1 VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPV 192
+D K +S F MKD+G+ SR+LGI+++RDR G + +SQ SY+ +V+KR+ E + V TP+
Sbjct: 1050 IDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPI 1113
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 1.500e-11 Identity = 28/63 (44.44%), Postives = 44/63 (69.84%), Query Frame = 1
Query: 1 VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTP 189
+ K ++QRF+M D+G + VLG+E++RDR GT+TISQ +Y + +L+R+G EC+ TP
Sbjct: 669 ISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTP 731
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 1.510e-11 Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 1
Query: 1 VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTP 189
+ K + QRF+M D+G + VLG+E++RDR GT+TISQ +Y + +L+R+G EC+ TP
Sbjct: 1026 ISMIKKKLKQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYTKSILERFGMSECKPTSTP 1088
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: A0A1J3G094_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3G094_NOCCA) HSP 1 Score: 63.2 bits (152), Expect = 2.030e-11 Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 1
Query: 1 VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTP 189
+ K ++S +F MKD+G SR+LG+++ RDR GT+ +SQ SYI +VLK +G E + TP
Sbjct: 22 IRSVKDSLSSKFEMKDMGKASRILGMDIIRDRERGTLQLSQESYIEKVLKTFGMTEAKPTTTP 84
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: A0A2U1MW82_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MW82_ARTAN) HSP 1 Score: 67.0 bits (162), Expect = 2.070e-11 Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 1
Query: 1 VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPV 192
+ E K +S F MKDLG+ ++LG+E+RRDR G +T+SQ YI +VLKR+ C+ + TP+
Sbjct: 977 IRELKDQLSNEFDMKDLGAAKKILGMEIRRDRKMGKLTLSQSDYISKVLKRFNMSNCKPILTPL 1040
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: UPI000EAB33BA (trypsin-1-like n=1 Tax=Ceratina calcarata TaxID=156304 RepID=UPI000EAB33BA) HSP 1 Score: 66.2 bits (160), Expect = 2.620e-11 Identity = 27/65 (41.54%), Postives = 44/65 (67.69%), Query Frame = 1
Query: 1 VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVD 195
+D+ K ++ Q F M D+G + +LGI ++RDR G IT+SQ YI E++K++ E +GV TP++
Sbjct: 18 LDKVKLSLKQEFEMTDMGPVKNILGINIKRDRHTGAITLSQEKYIEELIKKFNMQEAKGVSTPIE 82
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER) HSP 1 Score: 66.6 bits (161), Expect = 2.830e-11 Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 22 VSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVD 195
+ ++ +KDLG +LG+EV+RD+ GTI+ISQ YI EVLKRYG + C+ V TP++
Sbjct: 1047 LGEKIELKDLGEPKYILGLEVKRDKTQGTISISQKKYIGEVLKRYGMENCKPVSTPIE 1104
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: A0A6S7JH29_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JH29_PARCT) HSP 1 Score: 63.5 bits (153), Expect = 4.250e-11 Identity = 27/65 (41.54%), Postives = 47/65 (72.31%), Query Frame = 1
Query: 1 VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVD 195
++E K + +F+++DLG +S +LG+ ++RDR + T+TISQ Y+ VLKR+ +EC+ V TP++
Sbjct: 76 LEEEKVAIGTKFKVEDLGEVSHMLGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLE 140
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Match: A0A438GE57_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GE57_VITVI) HSP 1 Score: 65.9 bits (159), Expect = 5.240e-11 Identity = 26/64 (40.62%), Postives = 46/64 (71.88%), Query Frame = 1
Query: 1 VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPV 192
++ K +S++F MKDLG+ ++LG+ + RD+PNGT+ +SQ Y+++VL R+ +E + V TP+
Sbjct: 347 INNLKKQLSKQFAMKDLGAAKQILGMRIIRDKPNGTLKLSQSEYVKKVLSRFNMNEAKPVSTPL 410 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59343.13567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig59343.13567.1 >prot_H-paniculata_contig59343.13567.1 ID=prot_H-paniculata_contig59343.13567.1|Name=mRNA_H-paniculata_contig59343.13567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp VDEFKHNVSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKback to top mRNA from alignment at H-paniculata_contig59343:531..725+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig59343.13567.1 ID=mRNA_H-paniculata_contig59343.13567.1|Name=mRNA_H-paniculata_contig59343.13567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig59343:531..725+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig59343:531..725+ >mRNA_H-paniculata_contig59343.13567.1 ID=mRNA_H-paniculata_contig59343.13567.1|Name=mRNA_H-paniculata_contig59343.13567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig59343:531..725+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |