mRNA_H-paniculata_contig5928.13557.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5928.13557.1
Unique NamemRNA_H-paniculata_contig5928.13557.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5928.13557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5928contigH-paniculata_contig5928:3207..5841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1843
Cds size1842
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930650.3999214-CDS-H-paniculata_contig5928:3206..42801622930650.3999214-CDS-H-paniculata_contig5928:3206..4280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5928 3207..4280 -
1691481389.4671297-CDS-H-paniculata_contig5928:3206..42801691481389.4671297-CDS-H-paniculata_contig5928:3206..4280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5928 3207..4280 -
1622930650.4154286-CDS-H-paniculata_contig5928:5073..58411622930650.4154286-CDS-H-paniculata_contig5928:5073..5841Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5928 5074..5841 -
1691481389.4768338-CDS-H-paniculata_contig5928:5073..58411691481389.4768338-CDS-H-paniculata_contig5928:5073..5841Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5928 5074..5841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5928.13557.1prot_H-paniculata_contig5928.13557.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5928 3207..5841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5928.13557.1

>prot_H-paniculata_contig5928.13557.1 ID=prot_H-paniculata_contig5928.13557.1|Name=mRNA_H-paniculata_contig5928.13557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=614bp
MWAGAGAAGDLTAVGSGYWSDGHIVNSSAAAATAAEHRRRRQISASPHGG
EVFSVFGVNGCGRSSSSSMADRRRDHHGRSKDRMVFHEGRRARNCFLRSM
DGVEGKEDHAVHDSAADAAFYYYYEDIHGYDKIAPTTTANSRFRGGSGGR
RQRSKHKKRAKSSSESEDEDEDSDEGTSEADAEGGGRRPLSGSKTRESNA
TRARRRRSDERHAEARERAEAAERLLAEERQVMARKLEAERARFRAKEEE
RHRERQEDRARREEQEVEAMRRRLADEEVRAAAVMATATVAAAAERMRRT
ASRLDMDRQEIEGREREKQLLLAVKGDLGDKGAELLKDWNMAVGDVRGMG
KGSGGDAVLSSPSSSHFMLRRTDQTGVENGGRTVGGDGGGGGDSRPPVIA
LVEKNIGEAKSGPSDRAEVAPVVVESVTVVPSTAETDLEVESALQLMMTL
GKAHGPCDHSSEEAAQHQRNEGQLAASYLLEADPPARGDSRSAVEGEKHS
KYDHAALLADSAVAVNSVIAPATESVNCSAVSAAGYSDGTSALSVAAVTG
QLPAAAAEKQNGNDSANAVLTGYHPSAAAAENTAVATVRSGDVARTHAVE
RNSTARHGMVEETQ
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mRNA from alignment at H-paniculata_contig5928:3207..5841-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5928.13557.1 ID=mRNA_H-paniculata_contig5928.13557.1|Name=mRNA_H-paniculata_contig5928.13557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2635bp|location=Sequence derived from alignment at H-paniculata_contig5928:3207..5841- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGGCGGGGGCGGGGGCGGCAGGAGACTTGACGGCTGTCGGCTCGGG
CTACTGGAGCGACGGGCATATAGTGAATTCTTCGGCGGCCGCCGCCACCG
CTGCCGAGCACCGTCGGCGGCGGCAGATTAGTGCGAGTCCTCATGGTGGC
GAAGTATTTTCCGTGTTCGGGGTCAATGGCTGCGGCAGAAGTAGCAGCAG
CAGCATGGCAGACAGGCGCAGAGACCACCACGGACGAAGCAAGGACAGGA
TGGTGTTTCACGAGGGCAGGAGGGCGAGAAACTGTTTTTTGAGAAGCATG
GACGGGGTTGAGGGCAAAGAGGACCACGCGGTCCACGACTCTGCCGCTGA
TGCCGCCTTCTACTACTACTATGAGGACATCCATGGGTACGACAAAATAG
CACCGACTACTACTGCGAACAGCCGCTTTAGAGGCGGCAGCGGGGGCAGG
AGACAGCGGTCGAAGCATAAAAAACGCGCCAAATCGTCGAGCGAGAGTGA
AGACGAAGATGAAGATAGCGACGAGGGGACGAGCGAGGCCGACGCCGAAG
GCGGCGGGCGCCGTCCCTTGTCCGGGAGCAAGACCCGTGAATCCAATGCC
ACGAGGGCAAGGAGACGGAGAAGTGATGAGCGTCATGCGGAGGCCAGAGA
GCGCGCCGAAGCCGCCGAGCGGCTGCTGGCAGAGGAGCGGCAGGTGATGG
CGAGGAAGCTCGAGGCGGAACGAGCACGGTTTCGCGCGAAGGAGGAGGAG
AGGCATCGCGAGCGCCAGGTCAGTGTATGTGGGGGGGAAAGATGGGGGGG
GGCTCGGAGTTGTCCTATTTTGTTTTTTTCCCCAGCGTGGTTTATCCCGC
AGGTGGTGATGTGTGACACACTCGTCCTCAATCCTCCATGCTTTTTTTTT
GCTAGGGATGGCGGGATTAGGTGCACAGCATTGGAATGTAAGGTGTATGG
TGTATAGGCATGAGCCATGATCGAAGTGCTTCTCTTTCTTCCCACGGTGA
TGGGTGTACGAACTTGATTTTTTTCGGAAATTTTATTTATTGTGTATTGC
AAGTGACACGGAAAGTGATTGGAGAGGTATCGCGAGATGTGTGGGATGGA
CGATGTGCTTATTTCGGCCGCACAGAGGGTCTGTTTGTGTTCTCGGGAAG
GTAGAGGTTTTGAAATGTCAACACTGAGGGGTGGGTGGTGGTACAACGTC
ACGTGTAGTACGTAGGTCGTTATACAGCGAGTGCTGGGTTTGTCGTGCAA
ATCAGTCAAGTTTTTGTTGTTTTTGTCCATCTGCAGTTCGTACGTGACAG
TAGTACACCGTACAGTTGTGCATGCTGATTGTTACGTCCACACCATTGTC
TCTTAGCTGCAGACGTGGCCTTTTTCACTGCTTGCCCCCATGTTGGTGTA
GTAGCGTGCAGCGAGTGCGGGTCAGGTGTATTTCATATTAATGTGCACCC
TTGTGTAAATGATCCCCTCTCCCCTATTTGATTAGTTTTGCAGACAAATG
CACACAACTGACATTTGAGGCCTCCCGTTCCCCCCTCTCTCCCCCGCTCC
TTTGAGCACAGGAGGATCGGGCCCGACGGGAAGAGCAGGAGGTGGAGGCG
ATGCGCAGGCGCCTGGCAGATGAAGAGGTCAGAGCCGCGGCCGTGATGGC
CACGGCTACAGTGGCGGCCGCGGCCGAACGTATGCGGAGGACCGCATCTA
GGTTAGATATGGACAGGCAAGAGATCGAGGGGCGAGAGAGGGAGAAGCAG
CTGCTGCTGGCTGTCAAGGGTGACTTGGGTGATAAAGGTGCCGAGTTGTT
GAAGGACTGGAACATGGCGGTGGGGGATGTACGGGGCATGGGTAAAGGTA
GCGGCGGTGACGCAGTATTATCGTCACCGTCTTCATCACATTTTATGTTG
CGGCGAACAGACCAGACCGGTGTCGAGAACGGTGGGAGAACGGTAGGAGG
AGACGGAGGGGGGGGAGGTGACTCTCGGCCACCGGTGATTGCCTTGGTGG
AGAAGAATATCGGTGAAGCGAAGTCCGGGCCGTCCGACCGGGCGGAGGTG
GCGCCGGTGGTGGTGGAGTCTGTGACAGTTGTCCCCTCGACAGCAGAGAC
GGATTTGGAAGTGGAATCGGCCTTACAGCTCATGATGACGTTGGGGAAAG
CCCATGGACCCTGTGATCATAGCAGCGAGGAAGCAGCACAGCACCAGCGG
AATGAAGGACAATTGGCAGCTTCTTACCTACTCGAGGCTGACCCTCCTGC
CCGGGGAGATTCTCGTAGTGCCGTAGAAGGAGAAAAGCATAGCAAGTATG
ATCACGCCGCCCTGTTGGCTGATTCTGCGGTGGCGGTGAATTCGGTGATT
GCTCCGGCTACGGAATCGGTGAATTGCAGTGCGGTTTCAGCGGCAGGCTA
CTCTGATGGTACTTCAGCTCTTAGCGTCGCAGCAGTAACAGGCCAGCTAC
CTGCTGCTGCTGCTGAGAAACAGAACGGGAATGATAGCGCTAATGCCGTG
CTTACCGGTTATCATCCCTCGGCCGCCGCCGCTGAGAATACCGCCGTAGC
GACTGTGAGATCTGGCGATGTGGCCAGGACACACGCAGTGGAGAGGAATA
GCACCGCCAGACATGGAATGGTTGAGGAAACGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5928:3207..5841-

>mRNA_H-paniculata_contig5928.13557.1 ID=mRNA_H-paniculata_contig5928.13557.1|Name=mRNA_H-paniculata_contig5928.13557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3684bp|location=Sequence derived from alignment at H-paniculata_contig5928:3207..5841- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGGCGGGGGCGGGGGCGGCAGGAGACTTGACGGCTGTCGGCTCGGG
CTACTGGAGCGACGGGCATATAGTGAATTCTTCGGCGGCCGCCGCCACCG
CTGCCGAGCACCGTCGGCGGCGGCAGATTAGTGCGAGTCCTCATGGTGGC
GAAGTATTTTCCGTGTTCGGGGTCAATGGCTGCGGCAGAAGTAGCAGCAG
CAGCATGGCAGACAGGCGCAGAGACCACCACGGACGAAGCAAGGACAGGA
TGGTGTTTCACGAGGGCAGGAGGGCGAGAAACTGTTTTTTGAGAAGCATG
GACGGGGTTGAGGGCAAAGAGGACCACGCGGTCCACGACTCTGCCGCTGA
TGCCGCCTTCTACTACTACTATGAGGACATCCATGGGTACGACAAAATAG
CACCGACTACTACTGCGAACAGCCGCTTTAGAGGCGGCAGCGGGGGCAGG
AGACAGCGGTCGAAGCATAAAAAACGCGCCAAATCGTCGAGCGAGAGTGA
AGACGAAGATGAAGATAGCGACGAGGGGACGAGCGAGGCCGACGCCGAAG
GCGGCGGGCGCCGTCCCTTGTCCGGGAGCAAGACCCGTGAATCCAATGCC
ACGAGGGCAAGGAGACGGAGAAGTGATGAGCGTCATGCGGAGGCCAGAGA
GCGCGCCGAAGCCGCCGAGCGGCTGCTGGCAGAGGAGCGGCAGGTGATGG
CGAGGAAGCTCGAGGCGGAACGAGCACGGTTTCGCGCGAAGGAGGAGGAG
AGGCATCGCGAGCGCCAGATGTGGGCGGGGGCGGGGGCGGCAGGAGACTT
GACGGCTGTCGGCTCGGGCTACTGGAGCGACGGGCATATAGTGAATTCTT
CGGCGGCCGCCGCCACCGCTGCCGAGCACCGTCGGCGGCGGCAGATTAGT
GCGAGTCCTCATGGTGGCGAAGTATTTTCCGTGTTCGGGGTCAATGGCTG
CGGCAGAAGTAGCAGCAGCAGCATGGCAGACAGGCGCAGAGACCACCACG
GACGAAGCAAGGACAGGATGGTGTTTCACGAGGGCAGGAGGGCGAGAAAC
TGTTTTTTGAGAAGCATGGACGGGGTTGAGGGCAAAGAGGACCACGCGGT
CCACGACTCTGCCGCTGATGCCGCCTTCTACTACTACTATGAGGACATCC
ATGGGTACGACAAAATAGCACCGACTACTACTGCGAACAGCCGCTTTAGA
GGCGGCAGCGGGGGCAGGAGACAGCGGTCGAAGCATAAAAAACGCGCCAA
ATCGTCGAGCGAGAGTGAAGACGAAGATGAAGATAGCGACGAGGGGACGA
GCGAGGCCGACGCCGAAGGCGGCGGGCGCCGTCCCTTGTCCGGGAGCAAG
ACCCGTGAATCCAATGCCACGAGGGCAAGGAGACGGAGAAGTGATGAGCG
TCATGCGGAGGCCAGAGAGCGCGCCGAAGCCGCCGAGCGGCTGCTGGCAG
AGGAGCGGCAGGTGATGGCGAGGAAGCTCGAGGCGGAACGAGCACGGTTT
CGCGCGAAGGAGGAGGAGAGGCATCGCGAGCGCCAGGAGGATCGGGCCCG
ACGGGAAGAGCAGGAGGTGGAGGCGATGCGCAGGCGCCTGGCAGATGAAG
AGGTCAGAGCCGCGGCCGTGATGGCCACGGCTACAGTGGCGGCCGCGGCC
GAACGTATGCGGAGGACCGCATCTAGGTTAGATATGGACAGGCAAGAGAT
CGAGGGGCGAGAGAGGGAGAAGCAGCTGCTGCTGGCTGTCAAGGGTGACT
TGGGTGATAAAGGTGCCGAGTTGTTGAAGGACTGGAACATGGCGGTGGGG
GATGTACGGGGCATGGGTAAAGGTAGCGGCGGTGACGCAGTATTATCGTC
ACCGTCTTCATCACATTTTATGTTGCGGCGAACAGACCAGACCGGTGTCG
AGAACGGTGGGAGAACGGTAGGAGGAGACGGAGGGGGGGGAGGTGACTCT
CGGCCACCGGTGATTGCCTTGGTGGAGAAGAATATCGGTGAAGCGAAGTC
CGGGCCGTCCGACCGGGCGGAGGTGGCGCCGGTGGTGGTGGAGTCTGTGA
CAGTTGTCCCCTCGACAGCAGAGACGGATTTGGAAGTGGAATCGGCCTTA
CAGCTCATGATGACGTTGGGGAAAGCCCATGGACCCTGTGATCATAGCAG
CGAGGAAGCAGCACAGCACCAGCGGAATGAAGGACAATTGGCAGCTTCTT
ACCTACTCGAGGCTGACCCTCCTGCCCGGGGAGATTCTCGTAGTGCCGTA
GAAGGAGAAAAGCATAGCAAGTATGATCACGCCGCCCTGTTGGCTGATTC
TGCGGTGGCGGTGAATTCGGTGATTGCTCCGGCTACGGAATCGGTGAATT
GCAGTGCGGTTTCAGCGGCAGGCTACTCTGATGGTACTTCAGCTCTTAGC
GTCGCAGCAGTAACAGGCCAGCTACCTGCTGCTGCTGCTGAGAAACAGAA
CGGGAATGATAGCGCTAATGCCGTGCTTACCGGTTATCATCCCTCGGCCG
CCGCCGCTGAGAATACCGCCGTAGCGACTGTGAGATCTGGCGATGTGGCC
AGGACACACGCAGTGGAGAGGAATAGCACCGCCAGACATGGAATGGTTGA
GGAAACGCAGGAGGATCGGGCCCGACGGGAAGAGCAGGAGGTGGAGGCGA
TGCGCAGGCGCCTGGCAGATGAAGAGGTCAGAGCCGCGGCCGTGATGGCC
ACGGCTACAGTGGCGGCCGCGGCCGAACGTATGCGGAGGACCGCATCTAG
GTTAGATATGGACAGGCAAGAGATCGAGGGGCGAGAGAGGGAGAAGCAGC
TGCTGCTGGCTGTCAAGGGTGACTTGGGTGATAAAGGTGCCGAGTTGTTG
AAGGACTGGAACATGGCGGTGGGGGATGTACGGGGCATGGGTAAAGGTAG
CGGCGGTGACGCAGTATTATCGTCACCGTCTTCATCACATTTTATGTTGC
GGCGAACAGACCAGACCGGTGTCGAGAACGGTGGGAGAACGGTAGGAGGA
GACGGAGGGGGGGGAGGTGACTCTCGGCCACCGGTGATTGCCTTGGTGGA
GAAGAATATCGGTGAAGCGAAGTCCGGGCCGTCCGACCGGGCGGAGGTGG
CGCCGGTGGTGGTGGAGTCTGTGACAGTTGTCCCCTCGACAGCAGAGACG
GATTTGGAAGTGGAATCGGCCTTACAGCTCATGATGACGTTGGGGAAAGC
CCATGGACCCTGTGATCATAGCAGCGAGGAAGCAGCACAGCACCAGCGGA
ATGAAGGACAATTGGCAGCTTCTTACCTACTCGAGGCTGACCCTCCTGCC
CGGGGAGATTCTCGTAGTGCCGTAGAAGGAGAAAAGCATAGCAAGTATGA
TCACGCCGCCCTGTTGGCTGATTCTGCGGTGGCGGTGAATTCGGTGATTG
CTCCGGCTACGGAATCGGTGAATTGCAGTGCGGTTTCAGCGGCAGGCTAC
TCTGATGGTACTTCAGCTCTTAGCGTCGCAGCAGTAACAGGCCAGCTACC
TGCTGCTGCTGCTGAGAAACAGAACGGGAATGATAGCGCTAATGCCGTGC
TTACCGGTTATCATCCCTCGGCCGCCGCCGCTGAGAATACCGCCGTAGCG
ACTGTGAGATCTGGCGATGTGGCCAGGACACACGCAGTGGAGAGGAATAG
CACCGCCAGACATGGAATGGTTGAGGAAACGCAG
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