mRNA_H-paniculata_contig59266.13554.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig59266.13554.1
Unique Name	mRNA_H-paniculata_contig59266.13554.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig59266.13554.1 vs. uniprot
Match: A0A6H5JZ92_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ92_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 2.930e-41
Identity = 71/94 (75.53%), Postives = 74/94 (78.72%), Query Frame = -1

Query:   73 GGVSREEVTLATRECFRLHCPETLE-RVETFMRQKRWELIWTAPYMPSFQPIELF*QHDKQYVSFNFQLKRKMHEVWEQIRKGWYGDPTWPGQE 351
            GGVSR EV  ATRE   L+ PE LE RV TFMR+K W LIWT PYMPSFQPIELF QH KQYVS NF+LKRKM EVW QIRKGWYGD  WPGQE
Sbjct:  155 GGVSRAEVATATREHIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQE 248

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BLAST of mRNA_H-paniculata_contig59266.13554.1 vs. uniprot
Match: A0A6H5KF39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF39_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.060e-41
Identity = 71/94 (75.53%), Postives = 74/94 (78.72%), Query Frame = -1

Query:   73 GGVSREEVTLATRECFRLHCPETLE-RVETFMRQKRWELIWTAPYMPSFQPIELF*QHDKQYVSFNFQLKRKMHEVWEQIRKGWYGDPTWPGQE 351
            GGVSR EV  ATRE   L+ PE LE RV TFMR+K W LIWT PYMPSFQPIELF QH KQYVS NF+LKRKM EVW QIRKGWYGD  WPGQE
Sbjct:  172 GGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQE 265

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BLAST of mRNA_H-paniculata_contig59266.13554.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 5.260e-41
Identity = 71/94 (75.53%), Postives = 74/94 (78.72%), Query Frame = -1

Query:   73 GGVSREEVTLATRECFRLHCPETLE-RVETFMRQKRWELIWTAPYMPSFQPIELF*QHDKQYVSFNFQLKRKMHEVWEQIRKGWYGDPTWPGQE 351
            GGVSR EV  ATRE   L+ PE LE RV TFMR+K W LIWT PYMPSFQPIELF QH KQYVS NF+LKRKM EVW QIRKGWYGD  WPGQE
Sbjct:  197 GGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQE 290

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BLAST of mRNA_H-paniculata_contig59266.13554.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 8.720e-40
Identity = 71/94 (75.53%), Postives = 74/94 (78.72%), Query Frame = -1

Query:   73 GGVSREEVTLATRECFRLHCPETLE-RVETFMRQKRWELIWTAPYMPSFQPIELF*QHDKQYVSFNFQLKRKMHEVWEQIRKGWYGDPTWPGQE 351
            GGVSR EV  ATRE   L+ PE LE RV TFMR+K W LIWT PYMPSFQPIELF QH KQYVS NF+LKRKM EVW QIRKGWYGD  WPGQE
Sbjct:  368 GGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQE 461

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BLAST of mRNA_H-paniculata_contig59266.13554.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.520e-39
Identity = 77/125 (61.60%), Postives = 86/125 (68.80%), Query Frame = -1

Query:    1 GGVSREEVTLATRECFRLHCPETLE-RVETFMRQKRWELIWTAPYMPSFQPIELF*QHDKQYVSFNFQLKRKMHEVWEQIRKGWYGDPTWPGQEVDVGVPPERMQELVE-------EWVKSQEEL 351
            GGVSR EV  ATRE   L+ PE LE RV TFMR+K W LIWT PYMPSFQPIELF QH KQYVS  F+LKRKM EVW QIRKGWYGD  WPGQE   G       +LV+       +WVK ++E+
Sbjct:  352 GGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLKFELKRKMREVWVQIRKGWYGDKAWPGQE--GGWKAANCSKLVDHAIGEMNKWVKDRDEV 474

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BLAST of mRNA_H-paniculata_contig59266.13554.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.290e-39
Identity = 71/94 (75.53%), Postives = 74/94 (78.72%), Query Frame = -1

Query:   73 GGVSREEVTLATRECFRLHCPETLE-RVETFMRQKRWELIWTAPYMPSFQPIELF*QHDKQYVSFNFQLKRKMHEVWEQIRKGWYGDPTWPGQE 351
            GGVSR EV  ATRE   L+ PE LE RV TFMR+K W LIWT PYMPSFQPIELF QH KQYVS NF+LKRKM EVW QIRKGWYGD  WPGQE
Sbjct:  469 GGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQE 562

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BLAST of mRNA_H-paniculata_contig59266.13554.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.460e-39
Identity = 71/94 (75.53%), Postives = 74/94 (78.72%), Query Frame = -1

Query:   73 GGVSREEVTLATRECFRLHCPETLE-RVETFMRQKRWELIWTAPYMPSFQPIELF*QHDKQYVSFNFQLKRKMHEVWEQIRKGWYGDPTWPGQE 351
            GGVSR EV  ATRE   L+ PE LE RV TFMR+K W LIWT PYMPSFQPIELF QH KQYVS NF+LKRKM EVW QIRKGWYGD  WPGQE
Sbjct:  479 GGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQE 572

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BLAST of mRNA_H-paniculata_contig59266.13554.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 5.140e-38
Identity = 69/94 (73.40%), Postives = 74/94 (78.72%), Query Frame = -1

Query:   73 GGVSREEVTLATRECFRLHCPETLE-RVETFMRQKRWELIWTAPYMPSFQPIELF*QHDKQYVSFNFQLKRKMHEVWEQIRKGWYGDPTWPGQE 351
            GGVSR EV  ATRE  RL+ PE LE RV TFM++K W LIWT PYMPSFQPIELF QH KQYVS NF+LKRKM EVW QIR+GWYGD  W GQE
Sbjct:  503 GGVSRAEVATATREYIRLNYPERLEERVVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRQGWYGDKEWSGQE 596

[Close]

BLAST of mRNA_H-paniculata_contig59266.13554.1 vs. uniprot
Match: A0A6H5KKL0_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL0_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.360e-37
Identity = 69/94 (73.40%), Postives = 73/94 (77.66%), Query Frame = -1

Query:   73 GGVSREEVTLATRECFRLHCPETLE-RVETFMRQKRWELIWTAPYMPSFQPIELF*QHDKQYVSFNFQLKRKMHEVWEQIRKGWYGDPTWPGQE 351
            GGVSR EV  ATRE   L+ PE LE RV TFMR+K   LIWT PYMPSFQPIELF QH KQYVS NF+LKRK+ EVW QIRKGWYGD  WPGQE
Sbjct:  364 GGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGLALIWTPPYMPSFQPIELFWQHGKQYVSVNFELKRKVREVWVQIRKGWYGDKEWPGQE 457

[Close]

BLAST of mRNA_H-paniculata_contig59266.13554.1 vs. uniprot
Match: A0A6H5JS64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS64_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 3.590e-36
Identity = 63/87 (72.41%), Postives = 67/87 (77.01%), Query Frame = -1

Query:   73 VTLATRECFRLHCPETLE-RVETFMRQKRWELIWTAPYMPSFQPIELF*QHDKQYVSFNFQLKRKMHEVWEQIRKGWYGDPTWPGQE 330
            +T ATRE   L+ PE LE RV  FMR+K W LIWT PYMPSFQPIELF QH KQYVS NF+LKRKM EVW QIRKGWY D  WPGQE
Sbjct:   90 LTTATREYIHLNHPERLEERVVMFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYRDEAWPGQE 176

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig59266.13554.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig59266.13554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JZ92_9PHAE	2.930e-41	75.53	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KF39_9PHAE	3.060e-41	75.53	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KHE7_9PHAE	5.260e-41	75.53	DDE_3 domain-containing protein n=2 Tax=Ectocarpus...	[more]
A0A6H5K024_9PHAE	8.720e-40	75.53	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KDX7_9PHAE	1.520e-39	61.60	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KIM5_9PHAE	2.290e-39	75.53	DDE_3 domain-containing protein n=4 Tax=Ectocarpus...	[more]
A0A6H5JR41_9PHAE	2.460e-39	75.53	DDE_3 domain-containing protein n=5 Tax=Ectocarpus...	[more]
D8LNM6_ECTSI	5.140e-38	73.40	DDE_3 domain-containing protein n=3 Tax=Ectocarpus...	[more]
A0A6H5KKL0_9PHAE	1.360e-37	73.40	DDE_3 domain-containing protein n=2 Tax=Ectocarpus...	[more]
A0A6H5JS64_9PHAE	3.590e-36	72.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig59266	contig	H-paniculata_contig59266:3..353 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	352
Cds size	351
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930649.8553116-CDS-H-paniculata_contig59266:2..353	1622930649.8553116-CDS-H-paniculata_contig59266:2..353	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig59266 3..353 +
1691481389.2937322-CDS-H-paniculata_contig59266:2..353	1691481389.2937322-CDS-H-paniculata_contig59266:2..353	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig59266 3..353 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig59266.13554.1	prot_H-paniculata_contig59266.13554.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig59266 3..353 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig59266:3..353+
coding sequence from alignment at H-paniculata_contig59266:3..353+

protein sequence of mRNA_H-paniculata_contig59266.13554.1

>prot_H-paniculata_contig59266.13554.1 ID=prot_H-paniculata_contig59266.13554.1|Name=mRNA_H-paniculata_contig59266.13554.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
QLLLGLDPLLHQLLHALRRHANVYLLPWPRRVPVPTFANLLPHLVHFSLK
LKVEAHVLLIMLSKQLYRLKRRHVRRCPNQFPPLLPHERLHPLKRFRAVK
AETLSGGQRYLLSANTA

mRNA from alignment at H-paniculata_contig59266:3..353+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig59266.13554.1 ID=mRNA_H-paniculata_contig59266.13554.1|Name=mRNA_H-paniculata_contig59266.13554.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig59266:3..353+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTCCTCCTGGGACTTGACCCACTCCTCCACCAGCTCTTGCATGCGCT
CCGGCGGCACGCCAACGTCTACCTCCTGCCCTGGCCACGTCGGGTCCCCG
TACCAACCTTTGCGAATCTGCTCCCACACCTCGTGCATTTTTCGCTTAAG
CTGAAAGTTGAAGCTCACGTACTGCTTATCATGCTGTCAAAACAACTCTA
TCGGCTGAAAAGACGGCATGTAAGGCGCTGTCCAAATCAATTCCCACCTC
TTCTGCCGCATGAACGTCTCCACCCGCTCAAGCGTTTCAGGGCAGTGAAG
GCGGAAACACTCTCGGGTGGCCAACGTTACCTCCTCTCTGCTAACACCGC
C

Coding sequence (CDS) from alignment at H-paniculata_contig59266:3..353+

>mRNA_H-paniculata_contig59266.13554.1 ID=mRNA_H-paniculata_contig59266.13554.1|Name=mRNA_H-paniculata_contig59266.13554.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig59266:3..353+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTCCTCCTGGGACTTGACCCACTCCTCCACCAGCTCTTGCATGCGCT
CCGGCGGCACGCCAACGTCTACCTCCTGCCCTGGCCACGTCGGGTCCCCG
TACCAACCTTTGCGAATCTGCTCCCACACCTCGTGCATTTTTCGCTTAAG
CTGAAAGTTGAAGCTCACGTACTGCTTATCATGCTGTCAAAACAACTCTA
TCGGCTGAAAAGACGGCATGTAAGGCGCTGTCCAAATCAATTCCCACCTC
TTCTGCCGCATGAACGTCTCCACCCGCTCAAGCGTTTCAGGGCAGTGAAG
GCGGAAACACTCTCGGGTGGCCAACGTTACCTCCTCTCTGCTAACACCGC
CCAGCTCCTCCTGGGACTTGACCCACTCCTCCACCAGCTCTTGCATGCGC
TCCGGCGGCACGCCAACGTCTACCTCCTGCCCTGGCCACGTCGGGTCCCC
GTACCAACCTTTGCGAATCTGCTCCCACACCTCGTGCATTTTTCGCTTAA
GCTGAAAGTTGAAGCTCACGTACTGCTTATCATGCTGTCAAAACAACTCT
ATCGGCTGAAAAGACGGCATGTAAGGCGCTGTCCAAATCAATTCCCACCT
CTTCTGCCGCATGAACGTCTCCACCCGCTCAAGCGTTTCAGGGCAGTGAA
GGCGGAAACACTCTCGGGTGGCCAACGTTACCTCCTCTCTGCTAACACCG
CC