mRNA_H-paniculata_contig59222.13549.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59222.13549.1
Unique NamemRNA_H-paniculata_contig59222.13549.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig59222.13549.1 vs. uniprot
Match: A0A6H5KBS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS8_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.110e-13
Identity = 40/75 (53.33%), Postives = 47/75 (62.67%), Query Frame = -2 
Query:  387 SRQQAFDSLPQVDSGLPYVRLLHVANNKQLKSMLLPGVEVCSGNAELYLEIAASCPVYYAMWNNARALTQLEVTS 611
            SR +AF SL   +     VRLLHVANN QLK ML+PG EVC   AELYL +A +CP+YY  W N      +E TS
Sbjct:   21 SRPEAFRSLSVDEREDQRVRLLHVANNVQLKRMLVPGKEVCGPGAELYLRVAPTCPLYYMRWTNDVKQATVEFTS 95
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BLAST of mRNA_H-paniculata_contig59222.13549.1 vs. uniprot
Match: A0A6H5JUE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE7_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.290e-13
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = -2 
Query:  387 SRQQAFDSLPQVDSGLPYVRLLHVANNKQLKSMLLPGVEVCSGNAELYLEIAASCPVYYAMWNNARALTQLEVTS 611
            SR +AF SL   +     VRLLHVANN QLK ML+PG E C   AELYL +A +CP+YY  W N      +E TS
Sbjct:   21 SRPEAFRSLSLDEREDQRVRLLHVANNVQLKRMLVPGKEGCGPGAELYLRVAPTCPLYYMRWTNDVKQATVEFTS 95
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BLAST of mRNA_H-paniculata_contig59222.13549.1 vs. uniprot
Match: A0A6H5KEK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK0_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.340e-13
Identity = 40/75 (53.33%), Postives = 46/75 (61.33%), Query Frame = -2 
Query:  387 SRQQAFDSLPQVDSGLPYVRLLHVANNKQLKSMLLPGVEVCSGNAELYLEIAASCPVYYAMWNNARALTQLEVTS 611
            SR +AF SL         VRLLHVANN QLK ML+PG EVC   AELYL +A +CP+YY  W N      +E TS
Sbjct:   21 SRPEAFHSLSVDKRQDQRVRLLHVANNVQLKRMLVPGKEVCGPGAELYLRVAPTCPLYYTRWTNDVKQATVEFTS 95
[Close]
BLAST of mRNA_H-paniculata_contig59222.13549.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 5.000e-13
Identity = 40/75 (53.33%), Postives = 47/75 (62.67%), Query Frame = -2 
Query:  387 SRQQAFDSLPQVDSGLPYVRLLHVANNKQLKSMLLPGVEVCSGNAELYLEIAASCPVYYAMWNNARALTQLEVTS 611
            SR +AF SL   +     VRLLHVANN QLK ML+PG EVC   AELYL +A +CP+YY  W N      +E TS
Sbjct:  678 SRPEAFHSLSVDEREDQRVRLLHVANNVQLKRMLVPGKEVCGPGAELYLRVAPTCPLYYMRWTNDVKQATVEFTS 752
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BLAST of mRNA_H-paniculata_contig59222.13549.1 vs. uniprot
Match: D7G3U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U5_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 6.530e-6
Identity = 30/78 (38.46%), Postives = 49/78 (62.82%), Query Frame = -2 
Query:  384 SRQQAFDSLPQVDSGLPYVRLLHVANNKQLKSMLLPGVEVC--SGNAELYLEIAASCPVYYAMWNNARALTQLEVTSA 611
            SR+ A+ SL +      YVRL+  A+N QL++   PG E C  S  A+L+L++A +C +Y+A W+  R  T++++ SA
Sbjct:  543 SRRDAYLSLDEDAHDKRYVRLIRAASNAQLRACCTPG-EACLTSSTAQLFLQVAPTCLMYWARWSTDRRETRMDIRSA 619
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59222.13549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KBS8_9PHAE1.110e-1353.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUE7_9PHAE1.290e-1352.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEK0_9PHAE1.340e-1353.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBJ9_9PHAE5.000e-1353.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3U5_ECTSI6.530e-638.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59222contigH-paniculata_contig59222:369..980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size612
Cds size354
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59222.13549.1prot_H-paniculata_contig59222.13549.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59222 369..722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930649.1334474-CDS-H-paniculata_contig59222:368..7221622930649.1334474-CDS-H-paniculata_contig59222:368..722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59222 369..722 +
1691481388.8984041-CDS-H-paniculata_contig59222:368..7221691481388.8984041-CDS-H-paniculata_contig59222:368..722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59222 369..722 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930649.1546886-UTR-H-paniculata_contig59222:722..9801622930649.1546886-UTR-H-paniculata_contig59222:722..980Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59222 723..980 +
1691481388.9069178-UTR-H-paniculata_contig59222:722..9801691481388.9069178-UTR-H-paniculata_contig59222:722..980Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig59222 723..980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59222.13549.1

>prot_H-paniculata_contig59222.13549.1 ID=prot_H-paniculata_contig59222.13549.1|Name=mRNA_H-paniculata_contig59222.13549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
RQLYYLLPTSTATASFTLFPLPLLGVPLVLAVLLRHHVGHPCCCACEKKT
TSPIRLQNLQPGQQQPLERRRAAVLLLLLLFLRVSCAPASQTTPSAADVA
VDFNRQWVSVTRAGQST*
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mRNA from alignment at H-paniculata_contig59222:369..980+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59222.13549.1 ID=mRNA_H-paniculata_contig59222.13549.1|Name=mRNA_H-paniculata_contig59222.13549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=612bp|location=Sequence derived from alignment at H-paniculata_contig59222:369..980+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCAACTCTACTACTTACTGCCAACCTCCACTGCTACTGCCTCTTTTAC
TCTATTTCCTCTTCCTCTTCTTGGTGTTCCTCTTGTTCTTGCTGTTCTCC
TTCGTCATCATGTTGGTCATCCTTGTTGTTGTGCTTGTGAGAAGAAGACG
ACGAGTCCGATTCGTTTACAAAATCTTCAGCCTGGACAACAGCAGCCCCT
GGAGAGACGAAGAGCTGCTGTGTTGTTGTTGTTGCTGCTTTTTCTGCGTG
TCAGCTGTGCCCCTGCCTCGCAAACTACGCCCAGTGCCGCAGATGTTGCG
GTAGACTTTAACCGTCAGTGGGTTAGTGTCACCCGCGCCGGCCAAAGCAC
TTAACAAAGTCTCCCGCGAGCCCTTCGGCGGTATGCTGATGTCACCTCCA
ATTGCGTCAACGCACGTGCGTTGTTCCACATGGCGTAGTATACGGGACAC
GAAGCAGCAATCTCCAGGTACAGCTCTGCGTTCCCACTGCAAACCTCAAC
GCCGGGGAGTAGCATGCTCTTGAGCTGCTTGTTATTTGCCACATGCAGTA
GGCGCACGTATGGCAGCCCGCTGTCTACTTGAGGAAGTGAGTCGAAAGCC
TGCTGTCGCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig59222:369..980+

>mRNA_H-paniculata_contig59222.13549.1 ID=mRNA_H-paniculata_contig59222.13549.1|Name=mRNA_H-paniculata_contig59222.13549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig59222:369..980+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCAACTCTACTACTTACTGCCAACCTCCACTGCTACTGCCTCTTTTAC
TCTATTTCCTCTTCCTCTTCTTGGTGTTCCTCTTGTTCTTGCTGTTCTCC
TTCGTCATCATGTTGGTCATCCTTGTTGTTGTGCTTGTGAGAAGAAGACG
ACGAGTCCGATTCGTTTACAAAATCTTCAGCCTGGACAACAGCAGCCCCT
GGAGAGACGAAGAGCTGCTGTGTTGTTGTTGTTGCTGCTTTTTCTGCGTG
TCAGCTGTGCCCCTGCCTCGCAAACTACGCCCAGTGCCGCAGATGTTGCG
GTAGACTTTAACCGTCAGTGGGTTAGTGTCACCCGCGCCGGCCAAAGCAC
TTAACGCCAACTCTACTACTTACTGCCAACCTCCACTGCTACTGCCTCTT
TTACTCTATTTCCTCTTCCTCTTCTTGGTGTTCCTCTTGTTCTTGCTGTT
CTCCTTCGTCATCATGTTGGTCATCCTTGTTGTTGTGCTTGTGAGAAGAA
GACGACGAGTCCGATTCGTTTACAAAATCTTCAGCCTGGACAACAGCAGC
CCCTGGAGAGACGAAGAGCTGCTGTGTTGTTGTTGTTGCTGCTTTTTCTG
CGTGTCAGCTGTGCCCCTGCCTCGCAAACTACGCCCAGTGCCGCAGATGT
TGCGGTAGACTTTAACCGTCAGTGGGTTAGTGTCACCCGCGCCGGCCAAA
GCACTTAA
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