mRNA_H-paniculata_contig58825.13503.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig58825.13503.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 5.500e-8 Identity = 34/106 (32.08%), Postives = 58/106 (54.72%), Query Frame = 1
Query: 1 GATAHMTPSNELMFDYESYS-NLFVTVANGETLPIEGYGKMLVWMKDRSEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTVCLKEEGAVIALPNRSDLLCRKIEK 315
GATAHMTP +F+YE N+ VT+A+G+ + + G G + + D I + V H+PGLD L S+ + ++G++V ++ VI + + +K+ K
Sbjct: 268 GATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVIWYKSTAIASAKKVGK 370
BLAST of mRNA_H-paniculata_contig58825.13503.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 2.630e-7 Identity = 34/106 (32.08%), Postives = 58/106 (54.72%), Query Frame = 1
Query: 1 GATAHMTPSNELMFDYESY-SNLFVTVANGETLPIEGYGKMLVWMKDRSEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTVCLKEEGAVIALPNRSDLLCRKIEK 315
GATAHMTP E +FDY++ +++ VT+A+G+ + + G G + + D I V H+PGLD L S+ + ++GL V + +I ++ +K+ K
Sbjct: 165 GATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNVEFERTSCIIWNKKQATASGKKVGK 267
BLAST of mRNA_H-paniculata_contig58825.13503.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 3.350e-7 Identity = 33/106 (31.13%), Postives = 61/106 (57.55%), Query Frame = 1
Query: 1 GATAHMTPSNELMFDYESYS-NLFVTVANGETLPIEGYGKMLVWMKDRSEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTVCLKEEGAVIALPNRSDLLCRKIEK 315
GATAHMTP + +F+Y + S +++VT+A+G+ + + G G + + D I + V ++PGLD L S+ + ++G++V + VI +++ +KI K
Sbjct: 250 GATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSVGKLAERGMSVEFQRNSCVIWDKSKAVASGKKIGK 352
BLAST of mRNA_H-paniculata_contig58825.13503.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 1.160e-5 Identity = 30/81 (37.04%), Postives = 49/81 (60.49%), Query Frame = 1
Query: 1 GATAHMTPSNELMFDYE-SYSNLFVTVANGETLPIEGYGKMLVWMKDRSEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLT 240
GAT+HMTP E +FD E + S++ VT+A+G+ L + G G + + + I + V ++PGLD L S+ + ++GLT
Sbjct: 160 GATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAGQGTVRLTSLNGKHI---KMMEVLYIPGLDRRLLSVGKLAERGLT 237
BLAST of mRNA_H-paniculata_contig58825.13503.1 vs. uniprot
Match: A0A425C8P2_9STRA (gag_pre-integrs domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425C8P2_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 2.670e-5 Identity = 32/106 (30.19%), Postives = 53/106 (50.00%), Query Frame = 1
Query: 1 GATAHMTPSNELMFDYESY-SNLFVTVANGETLPIEGYGKMLVWMKDRSEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTVCLKEEGAVIALPNRSDLLCRKIEK 315
GATAHMTP E +FDY++ +++ VT+A+G+ + RV H+PGLD L S+ + ++GL V + +I N++ +K+ K
Sbjct: 35 GATAHMTPHREYLFDYKNLMTSIEVTIADGKKI------------------------RVLHIPGLDRRLLSVGKLAERGLNVEFERTSCIIWKKNQAAASGKKVGK 116
BLAST of mRNA_H-paniculata_contig58825.13503.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE) HSP 1 Score: 51.6 bits (122), Expect = 2.970e-5 Identity = 30/94 (31.91%), Postives = 49/94 (52.13%), Query Frame = 1
Query: 1 GATAHMTPSNELMFDYESYSNLFVTVANGETLPIEGYGK-MLVWMKDRSEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTVCLKEEGAVIALP 279
GA+AHMT +E ++T+A+G+ I G G +L + E+ + +S V +VPGL TNL S++ + ++ L V +G I P
Sbjct: 280 GASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDVSFNSDGCRIIDP 373 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58825.13503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig58825.13503.1 >prot_H-paniculata_contig58825.13503.1 ID=prot_H-paniculata_contig58825.13503.1|Name=mRNA_H-paniculata_contig58825.13503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp MTPSNELMFDYESYSNLFVTVANGETLPIEGYGKMLVWMKDRSEIHKFSLback to top mRNA from alignment at H-paniculata_contig58825:146..472- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig58825.13503.1 ID=mRNA_H-paniculata_contig58825.13503.1|Name=mRNA_H-paniculata_contig58825.13503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at H-paniculata_contig58825:146..472- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig58825:146..472- >mRNA_H-paniculata_contig58825.13503.1 ID=mRNA_H-paniculata_contig58825.13503.1|Name=mRNA_H-paniculata_contig58825.13503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig58825:146..472- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |