mRNA_H-paniculata_contig5875.13490.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5875.13490.1
Unique NamemRNA_H-paniculata_contig5875.13490.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5875.13490.1 vs. uniprot
Match: D7FM74_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM74_ECTSI)

HSP 1 Score: 352 bits (903), Expect = 9.360e-116
Identity = 162/222 (72.97%), Postives = 188/222 (84.68%), Query Frame = 2 
Query:  185 LQNQLNVDRRVRVIVHTKNMGWAPSPSPSVWRKRLALEGPQESGRVTSVVRYDANSEFKEHGHPDGEEIMVLEGSWQDANGDHPAGTYMLNPEGFRHAPRSKDGCVLLVKLRQHGGPSREHMRLDTETMPWQDSGMNGVQVKSLYTHQEHAETMRIESWAAGSKVERNCPVLTEYLFIEGGAQ--EGSDTFEKWSWLRVPAGGQISMTSTGGCRVFVKEGEW 844
            + +QL+VDR VRV VHT  M WAPSPSPSVWRKR+ALEGPQESGRVTSVVRYDANS+F EHGHPDGEEI+VLEGSWQDANGDHPAGTYMLNPEGFRHAP S+DGCVL VKLRQHGGPSR+H RLDT +M W+D+ + GV+ K LY+H +H E+MRIE W AG+KVER C  +TE+L +EG A+  + S+TF K SWLR+PAG  +SMTS  GC+VFVKEGEW
Sbjct:    1 MASQLSVDRSVRVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPCSRDGCVLWVKLRQHGGPSRKHTRLDTNSMQWEDTDIPGVKAKELYSHPDHVESMRIEKWDAGAKVERECQKMTEFLVLEGEAEAHDASETFTKRSWLRLPAGATLSMTSAAGCQVFVKEGEW 222
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BLAST of mRNA_H-paniculata_contig5875.13490.1 vs. uniprot
Match: A0A1Y5TZ85_9PROT (ChrR Cupin-like domain protein n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5TZ85_9PROT)

HSP 1 Score: 222 bits (565), Expect = 2.340e-65
Identity = 110/219 (50.23%), Postives = 140/219 (63.93%), Query Frame = 2 
Query:  185 LQNQLNVDRRVRVIVHTKNMGWAPSPSPSVWRKRLALEGPQESGRVTSVVRYDANSEFKEHGHPDGEEIMVLEGSWQDANGDHPAGTYMLNPEGFRHAPRSKDGCVLLVKLRQHGGPSREHMRLDTETMPWQDSGMNGVQVKSLYTHQEHAETMRIESWAAGSKVERNCPVL-TEYLFIEGGAQEGSDTFEKWSWLRVPAGGQISMTSTGGCRVFVKEG 838
            + ++LN D   RV + T  M W  SPSPSVWRKRL L GP E+GRVT++VRY+  S F  H HPDGEEI+VLEG++ D +GD+PAG+Y+LNPEGFRHAP S DGC+L VKLRQ GGP R H  +DT  + WQ   M G  VK LY   +  E MR+     G++V R+      E L +EG   +   T+ K SWLR P G   S+ S  G  ++VK+G
Sbjct:    1 MSHELNADFHARVAMDTAAMAWQASPSPSVWRKRLDLSGPAEAGRVTALVRYEPGSRFPAHEHPDGEEILVLEGTFSDEHGDYPAGSYLLNPEGFRHAPFSVDGCLLFVKLRQFGGPGRAHHAIDTAALDWQPGNMPGRSVKPLYAAPDGIEQMRLVRLDPGAQVPRHVHDRGEEVLVLEGAIADEDGTYGKGSWLRFPDGSAHSVRSEHGAVIYVKQG 219
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BLAST of mRNA_H-paniculata_contig5875.13490.1 vs. uniprot
Match: A0A7C2JUM9_9GAMM (Anti-sigma factor n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C2JUM9_9GAMM)

HSP 1 Score: 213 bits (543), Expect = 5.090e-62
Identity = 105/215 (48.84%), Postives = 140/215 (65.12%), Query Frame = 2 
Query:  197 LNVDRRVRVIVHTKNMGWAPSPSPSVWRKRLALEGPQESGRVTSVVRYDANSEFKEHGHPDGEEIMVLEGSWQDANGDHPAGTYMLNPEGFRHAPRSKDGCVLLVKLRQHGGPSREHMRLDTETMPWQDSGMNGVQVKSLYTHQEHAETMRIESWAAGSKVER-NCPVLTEYLFIEGGAQEGSDTFEKWSWLRVPAGGQISMTSTGGCRVFVKEG 838
            +N D   RV V T  M W PSPS +V+RKR+ L GP ESG+VTSVVRY   + F  H HPDGEEI+VLEG + D +GD PAGTY+LNPEGFRH+P S+DGCVL VKLRQ  G +REH+ L T+T+ W+ +   GV V+ LY     A+TMR+E W   +++     P   E   +EG  ++    F + +WLR+P G   S ++  GC +++KEG
Sbjct:   10 INGDLGRRVAVDTAAMAWTPSPSRTVFRKRVHLVGPPESGQVTSVVRYGPGATFHTHAHPDGEEILVLEGVFSDEHGDWPAGTYLLNPEGFRHSPFSRDGCVLFVKLRQFPGRTREHVALRTDTLEWRPAARAGVAVRPLYAQAGFADTMRLERWPPEARLRPIEYPSGAELFVLEGSFRDEDGEFARGAWLRLPPGAAHSPSTAEGCVLYIKEG 224
[Close]
BLAST of mRNA_H-paniculata_contig5875.13490.1 vs. uniprot
Match: A0A2N6CH89_9GAMM (Anti-sigma factor n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A2N6CH89_9GAMM)

HSP 1 Score: 213 bits (542), Expect = 5.360e-62
Identity = 102/218 (46.79%), Postives = 139/218 (63.76%), Query Frame = 2 
Query:  197 LNVDRRVRVIVHTKNMGWAPSPSPSVWRKRLALEGPQESGRVTSVVRYDANSEFKEHGHPDGEEIMVLEGSWQDANGDHPAGTYMLNPEGFRHAPRSKDGCVLLVKLRQHGGPSREHMRLDTETMPWQDSGMNGVQVKSLYTHQEHAETMRIESWAAGSKVERNCPVLTEYLFIEGGAQEGSDTFEKWSWLRVPAGGQISMTSTGGCRVFVKEGEWRS 850
            LN D   RV+V +  M W PSPS +VWRKRL L G  ES +VTS+VRYDA + F  H HP GEEI+VL+G + D +GD   G ++LNPEGFRHAP S++GCV+ VKL+Q+ G  R H  L  E++ WQ     GV+V++LY  +   E + +E+WAAG+ V R+ P   E L IEG   E        +WLR+PAG +  + S GGC ++++ G  +S
Sbjct:    4 LNADMSRRVVVDSNLMHWQPSPSATVWRKRLHLYGAAESAQVTSIVRYDAGATFPAHDHPAGEEILVLDGVFSDEHGDWGRGCHLLNPEGFRHAPFSREGCVIFVKLQQYAGSGRRHQALLGESVEWQPGDSAGVEVRNLYRQRGFPERIWMENWAAGTSVYRHYPEGVEMLVIEGSLGEAGSVHRSGTWLRLPAGTKTELQSAGGCHLYLQSGAMQS 221
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BLAST of mRNA_H-paniculata_contig5875.13490.1 vs. uniprot
Match: A0A2N5Y5A5_9GAMM (Anti-sigma factor n=1 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y5A5_9GAMM)

HSP 1 Score: 213 bits (542), Expect = 6.700e-62
Identity = 102/215 (47.44%), Postives = 138/215 (64.19%), Query Frame = 2 
Query:  197 LNVDRRVRVIVHTKNMGWAPSPSPSVWRKRLALEGPQESGRVTSVVRYDANSEFKEHGHPDGEEIMVLEGSWQDANGDHPAGTYMLNPEGFRHAPRSKDGCVLLVKLRQHGGPSREHMRLDTETMPWQDSGMNGVQVKSLYTHQEHAETMRIESWAAGSKVER-NCPVLTEYLFIEGGAQEGSDTFEKWSWLRVPAGGQISMTSTGGCRVFVKEG 838
            LN D   RV+V T++M W PSP+  V RKRL L G  ESG+VTS+VRY+  + F  H HP GEEI+VLEG + D +GD PAG+Y+LNPEGF+HAP S++GC+L VKLRQ+ G  REH+ +DT   PWQ S       K LY  + + + MR+ESW   + + + N P   E L ++G   +   ++    WLR+PAGG I  TS   C +++KEG
Sbjct:    8 LNGDLSRRVVVDTQSMDWTPSPAGQVLRKRLHLVGQAESGQVTSLVRYEPGASFPAHDHPQGEEILVLEGVFSDEHGDWPAGSYLLNPEGFKHAPFSREGCLLFVKLRQYPGADREHVAIDTTARPWQPSVRKNTSWKKLYAQEPYTDFMRLESWDTPAAIGQINFPQGAEILVLKGSFADDEGSYRTHCWLRIPAGGAIHPTSNEYCELYIKEG 222
[Close]
BLAST of mRNA_H-paniculata_contig5875.13490.1 vs. uniprot
Match: A0A523JY10_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523JY10_9GAMM)

HSP 1 Score: 211 bits (538), Expect = 2.080e-61
Identity = 107/216 (49.54%), Postives = 133/216 (61.57%), Query Frame = 2 
Query:  194 QLNVDRRVRVIVHTKNMGWAPSPSPSVWRKRLALEGPQESGRVTSVVRYDANSEFKEHGHPDGEEIMVLEGSWQDANGDHPAGTYMLNPEGFRHAPRSKDGCVLLVKLRQHGGPSREHMRLDTETMPWQDSGMNGVQVKSLYTHQEHAETMRIESWAAGSKV-ERNCPVLTEYLFIEGGAQEGSDTFEKWSWLRVPAGGQISMTSTGGCRVFVKEG 838
            +LN D    V+V T  M W  SP   VWRKRL L G  ESGRVTS+VRYDA S F  H HP+GEEI+VLEG   D +G +PAGTY+LNPEGFRHAPRS  GCVL VKLRQ+ G  R H  +D+ +  WQ S   G +V  LY    H E+MR+   A G++V E + P   E   + G   +G  T+E+ +WLR P G +    S  GC ++VK G
Sbjct:    3 ELNADFSRPVVVRTAAMEWRSSPGAGVWRKRLELRGAAESGRVTSIVRYDAGSRFPPHEHPEGEEILVLEGILADEHGSYPAGTYLLNPEGFRHAPRSDQGCVLFVKLRQYPGSDRSHCEVDSNSATWQQSEPPGREVLPLYDEHGHRESMRLVRLAPGTRVPEHDHPGGEEIYVMAGSLADGQGTYEQGTWLRFPDGSRHQPFSDEGCTLYVKTG 218
[Close]
BLAST of mRNA_H-paniculata_contig5875.13490.1 vs. uniprot
Match: A0A534ASB5_9GAMM (Anti-sigma factor n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534ASB5_9GAMM)

HSP 1 Score: 211 bits (536), Expect = 4.220e-61
Identity = 104/219 (47.49%), Postives = 142/219 (64.84%), Query Frame = 2 
Query:  185 LQNQLNVDRRVRVIVHTKNMGWAPSPSPSVWRKRLALEGPQESGRVTSVVRYDANSEFKEHGHPDGEEIMVLEGSWQDANGDHPAGTYMLNPEGFRHAPRSKDGCVLLVKLRQHGGPSREHMRLDTETMPWQDSGMNGVQVKSLYTHQEHAETMRIESWAAGSKVERNCPVLTEYLFIEGGAQEGS-DTFEKWSWLRVPAGGQISMTSTGGCRVFVKEG 838
            +   +N D   RV+V TK + W PSPS +VWRKRL L GP E+G+VTS+VRY  +SEF  H HPDGEEI+VLEG + D +GD PAGTY+LNPEGFRHAP S+ GC L VKLRQ  G  R H+ +DT+ + WQ     G  +K LY    +A++MR+E W +GS+           L++ GGA E    +++  +WLR+P   +    ++GGC +++KEG
Sbjct:    1 MHESVNGDLSARVVVDTKTLPWTPSPSGTVWRKRLHLVGPPEAGQVTSLVRYQPHSEFPLHDHPDGEEILVLEGVFSDEHGDWPAGTYLLNPEGFRHAPYSRGGCHLFVKLRQFPGKDRRHVVIDTQNLSWQTR--EGRAIKLLYAQVGYADSMRLERWPSGSRPGELKYSQGAELWVLGGAFEDERGSYDAHTWLRLPPQARHCPRTSGGCELYIKEG 217
[Close]
BLAST of mRNA_H-paniculata_contig5875.13490.1 vs. uniprot
Match: UPI000688EB27 (cupin domain-containing protein n=1 Tax=Marinobacterium jannaschii TaxID=64970 RepID=UPI000688EB27)

HSP 1 Score: 211 bits (536), Expect = 5.610e-61
Identity = 104/215 (48.37%), Postives = 133/215 (61.86%), Query Frame = 2 
Query:  197 LNVDRRVRVIVHTKNMGWAPSPSPSVWRKRLALEGPQESGRVTSVVRYDANSEFKEHGHPDGEEIMVLEGSWQDANGDHPAGTYMLNPEGFRHAPRSKDGCVLLVKLRQHGGPSREHMRLDTETMPWQDSGMNGVQVKSLYTHQEHAETMRIESWAAGSKV-ERNCPVLTEYLFIEGGAQEGSDTFEKWSWLRVPAGGQISMTSTGGCRVFVKEG 838
            +N D   RV +   +M W PSPS +VWRKR  L G  ESG+VTS+VRYD  + F  H HP GEEI+VLEG + D  GD PAG+Y+LNPEGF HAP S +GC+LLVKLRQ  G  R H+ LDT  + WQ S + GV VK LY   ++ E MR+E WA  S   E   P   E+  I G  ++    +   SWLR+PAG + +  S  GC +++K G
Sbjct:    4 INGDLSKRVQLDASSMDWQPSPSGTVWRKRFHLVGEGESGQVTSLVRYDPGARFPSHPHPGGEEILVLEGIFSDQQGDWPAGSYLLNPEGFEHAPGSAEGCLLLVKLRQFAGQERRHLALDTAELAWQPSEIKGVLVKQLYADNDYPEQMRLEHWAPDSHCGELEYPEGAEFFVISGEFEDEQGRYPAGSWLRLPAGSRHNPRSALGCELYIKTG 218
[Close]
BLAST of mRNA_H-paniculata_contig5875.13490.1 vs. uniprot
Match: A0A5C8ZZG8_9GAMM (Anti-sigma factor n=1 Tax=Parahaliea maris TaxID=2716870 RepID=A0A5C8ZZG8_9GAMM)

HSP 1 Score: 210 bits (534), Expect = 1.470e-60
Identity = 102/219 (46.58%), Postives = 138/219 (63.01%), Query Frame = 2 
Query:  188 QNQ-LNVDRRVRVIVHTKNMGWAPSPSPSVWRKRLALEGPQESGRVTSVVRYDANSEFKEHGHPDGEEIMVLEGSWQDANGDHPAGTYMLNPEGFRHAPRSKDGCVLLVKLRQHGGPSREHMRLDTETMPWQDSGMNGVQVKSLYTHQEHAETMRIESW-AAGSKVERNCPVLTEYLFIEGGAQEGSDTFEKWSWLRVPAGGQISMTSTGGCRVFVKEG 838
            +NQ +N D   RV+V T++M W+ SP   VWR+R+   GP ESG+VTSVVRY+  + F  H HP GEEI+VLEG + D  GD PAG+Y+LNPEGFRHAP SK+GC LLVKLRQ+ G  R+ + + T   PWQ S     Q K LY  + + + MR+E+W   G   + N P   E   ++G   +   T+    WLR+PAGG ++ TS   C +++KEG
Sbjct:    4 ENQAINGDLSKRVVVDTQSMPWSASPGAEVWRRRVHRVGPAESGQVTSVVRYEPGARFPSHDHPQGEEILVLEGVFSDEQGDWPAGSYLLNPEGFRHAPWSKEGCTLLVKLRQYPGADRDKVAIQTLDRPWQPSVRRNSQWKKLYAQEPYTDFMRLEAWDCPGDLGQVNFPRGAELFVLKGSFADAQGTYGTHCWLRIPAGGSLTPTSNEYCELYIKEG 222
[Close]
BLAST of mRNA_H-paniculata_contig5875.13490.1 vs. uniprot
Match: A0A4R2KPA9_9GAMM (ChrR-like anti-ECFsigma factor n=1 Tax=Chromatocurvus halotolerans TaxID=1132028 RepID=A0A4R2KPA9_9GAMM)

HSP 1 Score: 208 bits (530), Expect = 3.760e-60
Identity = 104/215 (48.37%), Postives = 135/215 (62.79%), Query Frame = 2 
Query:  197 LNVDRRVRVIVHTKNMGWAPSPSPSVWRKRLALEGPQESGRVTSVVRYDANSEFKEHGHPDGEEIMVLEGSWQDANGDHPAGTYMLNPEGFRHAPRSKDGCVLLVKLRQHGGPSREHMRLDTETMPWQDSGMNGVQVKSLYTHQEHAETMRIESWAAGSKVER-NCPVLTEYLFIEGGAQEGSDTFEKWSWLRVPAGGQISMTSTGGCRVFVKEG 838
            LN D   RV V T+ M W PSP   V RKRL L G  E+G+VTS+V+Y  +SEF EH HPDGEEI+VLEG + D  GD+PAG+Y+LNPEGF H P S++GC+L VKLRQ+ G  RE + + T   PW+ S   G   K LY  + + +  R+E+W   + + R N P   E L I G   +    + ++SWLRVP GG I+ TS   C VF+KEG
Sbjct:    7 LNADFSRRVAVDTEKMEWTPSPGGHVLRKRLHLVGRAEAGQVTSLVQYLPDSEFPEHNHPDGEEILVLEGVFSDETGDYPAGSYLLNPEGFSHKPFSREGCLLFVKLRQYPGQDRERIAVQTADQPWRSSVRKGASWKKLYAQEPYTDFSRLEAWDEPASLGRLNFPGGAEILVIRGEFSDEHGHYGQYSWLRVPQGGSITPTSNSYCEVFIKEG 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5875.13490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM74_ECTSI9.360e-11672.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Y5TZ85_9PROT2.340e-6550.23ChrR Cupin-like domain protein n=1 Tax=Oceanibacte... [more]
A0A7C2JUM9_9GAMM5.090e-6248.84Anti-sigma factor n=1 Tax=Gammaproteobacteria bact... [more]
A0A2N6CH89_9GAMM5.360e-6246.79Anti-sigma factor n=1 Tax=Chromatiales bacterium T... [more]
A0A2N5Y5A5_9GAMM6.700e-6247.44Anti-sigma factor n=1 Tax=Kineobactrum sediminis T... [more]
A0A523JY10_9GAMM2.080e-6149.54Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A534ASB5_9GAMM4.220e-6147.49Anti-sigma factor n=2 Tax=Gammaproteobacteria bact... [more]
UPI000688EB275.610e-6148.37cupin domain-containing protein n=1 Tax=Marinobact... [more]
A0A5C8ZZG8_9GAMM1.470e-6046.58Anti-sigma factor n=1 Tax=Parahaliea maris TaxID=2... [more]
A0A4R2KPA9_9GAMM3.760e-6048.37ChrR-like anti-ECFsigma factor n=1 Tax=Chromatocur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5875contigH-paniculata_contig5875:2165..9823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score352.1
Seed ortholog evalue2e-94
Seed eggNOG ortholog2880.D7FM74
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ChrR Cupin-like domain
EggNOG OGs2SA9Z@2759,COG3806@1
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-16_004810.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1730
Cds size681
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930640.6439183-UTR-H-paniculata_contig5875:2164..23391622930640.6439183-UTR-H-paniculata_contig5875:2164..2339Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5875 2165..2339 +
1691481385.1966739-UTR-H-paniculata_contig5875:2164..23391691481385.1966739-UTR-H-paniculata_contig5875:2164..2339Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5875 2165..2339 +
1622930640.8094416-UTR-H-paniculata_contig5875:8949..98231622930640.8094416-UTR-H-paniculata_contig5875:8949..9823Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5875 8950..9823 +
1691481385.27303-UTR-H-paniculata_contig5875:8949..98231691481385.27303-UTR-H-paniculata_contig5875:8949..9823Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5875 8950..9823 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930640.6592946-CDS-H-paniculata_contig5875:2339..23741622930640.6592946-CDS-H-paniculata_contig5875:2339..2374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5875 2340..2374 +
1691481385.2062278-CDS-H-paniculata_contig5875:2339..23741691481385.2062278-CDS-H-paniculata_contig5875:2339..2374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5875 2340..2374 +
1622930640.6883442-CDS-H-paniculata_contig5875:3331..34521622930640.6883442-CDS-H-paniculata_contig5875:3331..3452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5875 3332..3452 +
1691481385.2169073-CDS-H-paniculata_contig5875:3331..34521691481385.2169073-CDS-H-paniculata_contig5875:3331..3452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5875 3332..3452 +
1622930640.703252-CDS-H-paniculata_contig5875:5432..55171622930640.703252-CDS-H-paniculata_contig5875:5432..5517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5875 5433..5517 +
1691481385.2250664-CDS-H-paniculata_contig5875:5432..55171691481385.2250664-CDS-H-paniculata_contig5875:5432..5517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5875 5433..5517 +
1622930640.7200873-CDS-H-paniculata_contig5875:5922..59691622930640.7200873-CDS-H-paniculata_contig5875:5922..5969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5875 5923..5969 +
1691481385.235133-CDS-H-paniculata_contig5875:5922..59691691481385.235133-CDS-H-paniculata_contig5875:5922..5969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5875 5923..5969 +
1622930640.7392228-CDS-H-paniculata_contig5875:7128..72861622930640.7392228-CDS-H-paniculata_contig5875:7128..7286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5875 7129..7286 +
1691481385.2432725-CDS-H-paniculata_contig5875:7128..72861691481385.2432725-CDS-H-paniculata_contig5875:7128..7286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5875 7129..7286 +
1622930640.760059-CDS-H-paniculata_contig5875:7716..78321622930640.760059-CDS-H-paniculata_contig5875:7716..7832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5875 7717..7832 +
1691481385.2510211-CDS-H-paniculata_contig5875:7716..78321691481385.2510211-CDS-H-paniculata_contig5875:7716..7832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5875 7717..7832 +
1622930640.7806015-CDS-H-paniculata_contig5875:8830..89491622930640.7806015-CDS-H-paniculata_contig5875:8830..8949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5875 8831..8949 +
1691481385.2649772-CDS-H-paniculata_contig5875:8830..89491691481385.2649772-CDS-H-paniculata_contig5875:8830..8949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5875 8831..8949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5875.13490.1prot_H-paniculata_contig5875.13490.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5875 2340..8949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5875.13490.1

>prot_H-paniculata_contig5875.13490.1 ID=prot_H-paniculata_contig5875.13490.1|Name=mRNA_H-paniculata_contig5875.13490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
MENLQNQLNVDRRVRVIVHTKNMGWAPSPSPSVWRKRLALEGPQESGRVT
SVVRYDANSEFKEHGHPDGEEIMVLEGSWQDANGDHPAGTYMLNPEGFRH
APRSKDGCVLLVKLRQHGGPSREHMRLDTETMPWQDSGMNGVQVKSLYTH
QEHAETMRIESWAAGSKVERNCPVLTEYLFIEGGAQEGSDTFEKWSWLRV
PAGGQISMTSTGGCRVFVKEGEWRSS*
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mRNA from alignment at H-paniculata_contig5875:2165..9823+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5875.13490.1 ID=mRNA_H-paniculata_contig5875.13490.1|Name=mRNA_H-paniculata_contig5875.13490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7659bp|location=Sequence derived from alignment at H-paniculata_contig5875:2165..9823+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAATTGCCCCGCCTACCCGCACGCAACTTGCTGTGCTTGTTCGCTCCA
TGCCCATCACCGTCATACACAGTACAGCGGGCTTTATAATCACTACTCTC
CTGTTGCCCTATAGCCTGCTTCGCGCGCCAGCGACTCTATACCCTTGCTG
CCGAAATACCTCCCTGTCCTGCTAAATGGAGAATCTTCAGAATCAACTCA
ACGTGGACAGGTGAGGCTATGTCGCGCTATATGGCAGGCAAGTAGCCGCT
TTGGCCTCATTTGGCCGAATATTGCCCTAGTAGTAGTAGATCCATGGCTA
TGGCCGTGTATTTTGTGCTTCTCTTCGACACATGCACTCGCTGCACTCGC
AGAGGGGGCTCGCATAACGAACAACACTGCTGTTGCTCTCGCAGGAAGAT
TCATTTTTCAGGAGTTACTTGAGTGTAGACTCGACGACGATGACGGTTAC
CACCTTGCTGAAAAAGGATTCACTGTGTGGACCAACAGCCTTCTGTTGTT
CTAGTATCTTCCACAACATCAACTTTACGACAAAACCAAGTTCACTGCTG
ATGTGGTGTGTTGACTGTCAGCCTCATATTCGTCTAGTATCTTCCACGGC
CGAGCTTTACGATAGAATCAGTACCAGTGCGACAATGCTGCACACAAGAT
CCAAAACGAGATTACTGTTGTAGAGGGTAGAAAGCATGTTGTGAAACGAG
GCCGTTTTTTGTCCGATTTTTTTTTCCGTTTTCAGTTTTCCGAAAAATGG
AAGCTACAATAGCGATTCAAACAAGTTGACAGTGACCAAAGTGTACTAGA
TGTATGAGGAGACCATGGTGCACAGTGGTTCTACACCTTTTCCTCAAGTT
TGAGCTCGCTGCCGCGATTTCCATTTTTCGTAAAATGGAAAAGAGCGGAA
AATATGGGACAAAACAGGGCCTCGTTAGAACAGCCCAACTTGCAAGATAA
AACAACATGCTGAAACTGTGCCCGGTCTGACCGAGTCTGGCCTATCGCTA
GCCCTCACTCCCTAATCTATACGCTCCACAGCCCTTACCTCAGCTACCAG
TTAGGCGGCATCCGTAAAAACAATAGTTACAGCGATCCCACAACCTGAAG
TAGCTGCACATTCTTCAAGCTGCGATCATACTATCATAAACGCGATGTCA
CTATGCTGCCCGAGCAGGCGCGTGCGCGTCATCGTTCACACAAAGAACAT
GGGATGGGCACCGTCACCTTCTCCATCTGTGTGGCGCAAGCGTCTGGCAC
TAGAAGGCCCTCAAGAATCGGGCAGAGTAACGTCAGTGGTGAGTTGGTTG
GTCGAGAGGCTCCATGTTCTTGTCGCTACTTACCCATCCGAAACCCACCT
TCAACCCACCTTCAACCCACCTAGCTTTATCCATGATCACAAATCTCGGC
CTAGCTCGCGCAGTAATGCCTGTAACTAGCTGTCAAGGAAAAATGTTCCT
AGACCTTAAAGATAGAATCCGTGTTTCGAGTGATTTCCCACGCTCTGATT
GACTAAAGAATGATTCCCAGCAGCTCGCACAGCTCAAGAAAGCTAAACTA
CCACCGCTAAGACAACATCTGTAGACATGTTTAAATTGAAAATTAGTACT
TTGAGTACGAGTTTATATAAGGGGGTTGCAAGTTGCGAAATTCACTCTGC
GTGTATCTTGCTTATATTGGTAAGAAATATATCATTTAGCGCAGTACTAT
AGGATAGTATTGTACAACTTTGTGAAGAGATTCTAGACGCATTAATTTAT
AGTCTACTTGATCTAGAGCTATCTTTCTGGGAGAGAAGCAGTGGAAACCA
GCGAGAAACTTGCGGAAGGAGCGTGAAACTGACAGTACTCCAAAATTTGT
CAATAGGTCCTTGGAGGGCCCTGCACACAATTTTTTGTTAATCCCCGTCG
ACGCTGCCGAGAAGCAAAGCATAACCATCGATCCGAGACGTGTTGTAAGC
GGAAATAATGTGGCCCGCAAGCAGTGCTGATGTACTCTCCGAAGGTAGAC
CGATTTCAGACCCCCTGGAGTCTCGACGGATATAAAAACGAAACCTTTGG
ATGTGGGCGACGCATCGTGACTGAACTTACCGAGTATAGACCAGAGTGGA
TGGCCCCTTTAAGGCCCACCATTAGAAGATGCAGGCCAATTATAGGGCAT
ACCAATTTGGCTACACAGTTGGTCCCTCTCTAAGGCACAGTGCGCCTAAA
AGTAGACTTATCCAAGCTTTGTGTATTTGCCATAACCCAGGGCGTGCCCT
GCCTTGCGCAAAAGGAAAGTAATGCAAAGTACCAAACCTTACCCATATGT
CACCTATCTACACCTAGCACAATCGCCTTCATATTTTGACTTTATCAGTA
TTTGAGTCCTTGAAGAGCTTCACCATCGTTTTGTTTGATGGGTGATATCT
TTGTTTCTTTTTACAAGTCTGCATCTAACTCGGTCGTGCTGATGCCTTAC
ATCTAGTGTAAGAAATGCTTGCATGTTAGAGCTATGGGAGCTTTTGGATC
GTTTCGGCGATGGTGGACTACATATTACCAGGTACATGAATGGTTGAAGG
TTTTATTTTGAATACATAAAAGGCTTCCTTTTTTTTTCTGGCGGTTATGA
GCTGCGACTCTTCTTGCTTGTGTCTGTATTGGGTATAATCTTGATTTGGT
AACTGCATACATGTGACCTTGCTGGAGGAGTGTCATCCTACGGTAGCGGG
AGGGAGATATTTTAGCCGCGTTGTTTGTCTAAGGAGCTGCTTTGAGAAGG
GAATCGGGTTTTTTGTCTTTTTCATTTGTTGCCCCCCCTTTCCAACATAA
ATCCCATTTCAACTCGTAGACTGTGCACCTGTAGGGATGCACAACCACAT
GCAATTGACATGGTTTAGCGTTGCGATATTTTTGCACCGCATTTGTGAAG
CGACCTTCGCTAAACAATTGACCCCTGCACTATCGTAGGATGTCTCAGGA
ATCAAATGTAGTATATATGGACCGGTATTTACGATATAGAGCAACAAGGA
CATCTACCATATACCATGTTCGGTGACCTTCGTGCTTTGGGTAGTGATCA
ACAACTGGTATACAACACGTCCCATCCAGGGCCTTCTCATAGTTTGCGTA
TATTTTCGGCCGATTTTAAGGTGCCGAACACCTTGCAGTGGGCCAATTCC
ATGATAAGGCGCACGCCCATTCTAGGGTGCATCGATTCCGTCTGCACTGG
TGTGCCTTCAAAGGGCCACCCACTATACATAACCTGAAAAACGTTCAGTA
TCAGGTCCTTCCCCACAGGTTCGTTACGATGCAAATAGCGAGTTCAAGGA
GCATGGCCACCCCGACGGAGAAGAAATTATGGTGCTGGAGGGGTCCTGGC
AAGGTGAGTCATTTCACCTGTTGAGCTTGGGATGGGGTGCCGTGGTCTAC
GTAGTGCGTAGATTACACTTTCAAAGCACGAGAAAAAATACGTTTCTGGT
GCCTAGAAGCTTGTAAATAGGCGGAGATATATTTTTTCTGGTACCCCTCA
ATGGAAGGAAGCTCGTCTCACTCTTTCAATACGTTTGGTGGAAACTACGA
AATTCCCGTTTGTGCTGCTCATTACTGTGGTCTGTGGTCTGTCTGGCATG
TTCGGAATGGGAACATTACTTTTCTCTATTGCTGGACTTGTTTTTTTACT
GCGCACGTCCACCCTTCATCGAATGTGTTGGTATCGTGGACCGCTCTCTC
CTTGAACTTCCTCTGCTCCCGCCCGCGCCGCATATGGGCGTCTGCAATGC
TATTCAAGATGCAAACGGAGATCATCCAGCTGGCACGTACATGCTTAACC
CGGAAGTAAGTGTTGTACAGTTGAATTCAGTAGGTGAACGTGGAGTAGGT
AACTCTACTGTCTGTGTAGTGAATGCTCAGAAACGGATCATGGGCACACG
GCAACCGTCACAACAAGCATGCTTCCGTTTTGTACAGGAAGCAGCTCACC
ACTTAGCTAAGCAGTCAGCGCTGATTGTGTAGCTCAGTGGTGAGCTGCTT
TGTGTACATTATCCATGGTTTATTCACGGGGTACTTAATCGTAGTTATAT
GCTTAAGATCATTTGAGGTCTTGTCTCTAGGCGTGGAGCGCAGTCATTCC
CAGGGCGGGGAGAGGAAGGTGTAGAAAGGTGTGGAAAATGCGTAGTTAAG
CCATGTAGAAATATGTATGTTTTATAGTATTAATATACAGTGGAAGGGAA
GTATGGTTAGAGAGTAGAACTATACAGGGTGGGCCCCTTGCGTACACCGA
TGGTCTAACGACCATACATCTGATTCAACAGAACATGCCAACCTTATATA
AACTCCATGTAACTGACTAACAACGTAACCGTCATTTATCGATTATACCG
AACAGTACTGCAGTGTGATCCGGCAACCCACCAATGACGTTGGCGAAGTA
ACTATTGGGCTCGTAGTTGCCGTGCGACCGTTCGTCTTGCTCGTTTTGTG
CGTGGCCGTACAGCAGTGCAATAGCACACCCGTTCTGTTGCTACGTCCAT
CAAGATTTTATCATTGCCGTATGATCTGGCCATTCGAGCTTTCGAGTATT
TGTCTTCGGGAAACAATTACTTGCTGTCGGGTAGAGATGAACCGCGTTCG
GCACTCAAAGTAGCTCTGCTAGATTTGTGCGCTCGTGTCACATAATAACT
AGGATTTTCCTTTTAGGATAGATCCCATTCGAGCGGCGCATGTCGTTTCA
AGTGCGCGCGTTGTCGGTAAGTGTAATGAATCTGCAGGCGCGTGGTTTCA
ATTACTGAAGAGCACGTTCTCCGAGGGTGCGTAATCGACCGTCTTCGGTT
TTCATTTGCTGACTTCATCTAACTGTGCGACTATTGATATTGCGATAAAT
AAAAAGCAATCGTGATGTAAGTGACTGAGGGACGCCGTTGCGACCCTACG
CCTGACTGTAGCGTACGTTGTGTTTCGTGATTTCTCCCCGGTCTTTTTTT
TACGGCTTCGGCAGGGCTTCCGTCATGCACCCCGCTCCAAAGATGGTTGT
GTTCTCTTGGTGAAGCTTCGACAGCACGGTGGACCTTCCCGCGAACACAT
GCGCCTTGATACGGAGACCATGCCTTGGCAAGACTCCGGCATGAATGGAG
TTCAGGTCAAGTCGCTCTACACGTGAGTATAACCGTGTAGTCCAACAGAG
GATTGTCAGTATGTTCAGCCGCGCTAGTGTATGATGCCGTGTGGCACATG
CCTTGTCGATTTGAGGTTATTTCTGATGTGCGGTCGACCGCGATACCATG
CAGAGCCGCGGCGTGTTCGACGCTGGGGTATCAAGAGGGGTGCATTTTCA
TTAAAAAAGAATATCACCCGTTGCGGTAACCCCAACCAGGCGTCGTGAGT
GGAGTTGTTGACGCGTCTCGACAGTGCCCCCCGGGGCATGAGCATGTAGA
GCGTCGCCCCCTGGTGCTGCCCAGATGTGGTATATAGAGCTATGTTCAAC
CAAGCTCAATTCGGTCTGCAGACGCTTGTGTGCTGTAAAATCGGTTACGA
TGAAAGCGATCGGTGATACACCCTCCGCTCATGCGTCTCTGGCCCTGAGC
AGGCACCAGGAACATGCTGAGACTATGCGCATCGAAAGCTGGGCGGCCGG
CAGCAAAGTGGAGCGTAACTGTCCTGTTCTGACAGAGTATCTTTTCATCG
AAGGTGGCGCTCAAGAAGGTGCACTACGGAAATGTAATACAGTGGCCTCT
TGTTTTTTTAAAGGCTTATAACCTGTGTGTGCATCGTACTTTGCGTCCTC
AATGTGTGCATCGGCCTTCATGCTTTTATCAAGTCCCTGAAATAAATTTA
TCCAAGATATGATCGTTGTGGTCCCCATGTTTGGTCAATCGGGGCTATTC
ACGACCCATCTCTGAGCTTCTCGAGGCATTGATACTGCGCGGACAGCTAA
TCTTTCGATTCTTGGCGTAACCTTGAAGACCTCGGAATCAGCAGAGAAAT
ATGGATGAAAGATAAGCGTTGCAGTAGACGAAGATATAGCAGCGTTGCCG
AAGAACCACAACAACATGTACATCCCAAAGGCTAATCAGACGACCCCTTG
AGTGTACTGTATTGTATGCCAAGGGAGCGCTAAATATTTAATGAGTTAGC
TTAGCCGGTATTGGCACGACATCTGCCCACAAACTCTTTTCTTGCCTTCT
GTTTACAGGCCACGAAAGACTAGTTTGTAAAAAAATCATTAGAGAAGAAG
CGTTAAGCTCGCCAGAGATCTTCACCTCTTAACCCCTATCTTCTTTGCAG
CAACGGAAAACCCATTGGAGGTTTTCTGCTGGTCTGGTGCCGACGAAATG
AAAAGACTGGGTACGCAAGCTCTATAGCTCTTGTTACTAAACCCCACTCT
TTAAGGAGAAAAGTGGTTACTCGGCGTTTTTCACAATGCCTCCAGAAATG
AGGGAATGTGGTACTAATCCCGCCGTACCGTTGCCTGAACCCTGAAGACT
ACAGCTACCACTGAGAACCCCGTAAAACTTTCCAAGAAGCTAATGATGAA
ATATCGAACGTGACTCCCCAGGTGTCATACAAAGTATTTCCCAGCATAAC
ATTAAATGTGACTTCCTAACGGTCTCGCTCGAGTCATCCTCAGTCAGGGA
AGTTTATTTTCCAGAGATCCCTGATCGACATTCTCACAGAATCCGTCGGC
CGTCAATACTACGCAGGGAGCGACACGTTCGAGAAATGGAGTTGGCTGAG
GGTTCCGGCTGGCGGACAGATTTCAATGACCTCCACCGGTGGGTGCCGAG
TGTTCGTGAAGGAAGGAGAATGGCGCTCCTCGTAGCTCCGCGGACCGTTT
CAGCATCTGAGAAGGGCGTGTATGTGGTACAAGAAATCGTATGCAGAATC
AGGTTGATATAGCGTGCAACCACGGTGGATGTGAGCCGAGTATGACCCTA
TCGCAATCAAAGGGTCCACTAAGGTGATGATCTCAAAATCAGGTGATAAT
AGCTGGGCATATCTCCCGTCCATCAACCAAGTAGTAGTATATCCGCCGAG
TACGTGAACTCGGAGTAGTGGGGTTGCGGGTCATCGTATTCGTTAAAGCA
AGACGGGAGTGGCTTTCAATATTTCTCGGGCAGGGCGGACACTCCTCCTT
CCCTCATTAACTACCGTTTGCGTGACTATTGGATGTAGATTCTCCTCTGT
ATATTTATCGTTCGTTTGGGTGCACGGTAGGACTTCGTAAATACAGGTAT
CCAGCAAAGGGAGGACGGCTAATGTGTATCCAACCTTTGGACTCTATTAT
TCTGGGTTCATATGGGATGCAATATACTTTCCTGCGAGCTAGTCACCTTC
TTGCAGAGTGAAGTAGTCATATAGAGCTGTACCTTATAGCGCAGAATACT
TTCCCCTGGAGCTACGTAAACAGGCATACATGGCATGGTAACCGGCGATA
CCTATGACACAAGACACGCCATGCCTATGAGATAGGTAGCAGATATTGTG
ATTCACGCGCTCTATAGGGTCGACCGTTTTCTTCCTGGGTTTGGTGTTAA
TTGGATCTTCCGTCGCTTCTGTGTGTTTGGGGGAACACTCCAAGGAATAT
AAATTGAAAGCAACGAGACAGCATAGGAAGGGAGTCCACGAGTGTGATGC
TGCTGGACCTGAAGTTGACCGTCATGAATGTTTAAAGACCACGAAAAAGG
AGGAGGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig5875:2165..9823+

>mRNA_H-paniculata_contig5875.13490.1 ID=mRNA_H-paniculata_contig5875.13490.1|Name=mRNA_H-paniculata_contig5875.13490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig5875:2165..9823+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGAATCTTCAGAATCAACTCAACGTGGACAGATGGAGAATCTTCAG
AATCAACTCAACGTGGACAGGCGCGTGCGCGTCATCGTTCACACAAAGAA
CATGGGATGGGCACCGTCACCTTCTCCATCTGTGTGGCGCAAGCGTCTGG
CACTAGAAGGCCCTCAAGAATCGGGCAGAGTAACGTCAGTGGCGCGTGCG
CGTCATCGTTCACACAAAGAACATGGGATGGGCACCGTCACCTTCTCCAT
CTGTGTGGCGCAAGCGTCTGGCACTAGAAGGCCCTCAAGAATCGGGCAGA
GTAACGTCAGTGGTTCGTTACGATGCAAATAGCGAGTTCAAGGAGCATGG
CCACCCCGACGGAGAAGAAATTATGGTGCTGGAGGGGTCCTGGCAAGGTT
CGTTACGATGCAAATAGCGAGTTCAAGGAGCATGGCCACCCCGACGGAGA
AGAAATTATGGTGCTGGAGGGGTCCTGGCAAGATGCAAACGGAGATCATC
CAGCTGGCACGTACATGCTTAACCCGGAAATGCAAACGGAGATCATCCAG
CTGGCACGTACATGCTTAACCCGGAAGGCTTCCGTCATGCACCCCGCTCC
AAAGATGGTTGTGTTCTCTTGGTGAAGCTTCGACAGCACGGTGGACCTTC
CCGCGAACACATGCGCCTTGATACGGAGACCATGCCTTGGCAAGACTCCG
GCATGAATGGAGTTCAGGTCAAGTCGCTCTACACGGCTTCCGTCATGCAC
CCCGCTCCAAAGATGGTTGTGTTCTCTTGGTGAAGCTTCGACAGCACGGT
GGACCTTCCCGCGAACACATGCGCCTTGATACGGAGACCATGCCTTGGCA
AGACTCCGGCATGAATGGAGTTCAGGTCAAGTCGCTCTACACGCACCAGG
AACATGCTGAGACTATGCGCATCGAAAGCTGGGCGGCCGGCAGCAAAGTG
GAGCGTAACTGTCCTGTTCTGACAGAGTATCTTTTCATCGAAGGTGGCGC
TCAAGAAGGCACCAGGAACATGCTGAGACTATGCGCATCGAAAGCTGGGC
GGCCGGCAGCAAAGTGGAGCGTAACTGTCCTGTTCTGACAGAGTATCTTT
TCATCGAAGGTGGCGCTCAAGAAGGGAGCGACACGTTCGAGAAATGGAGT
TGGCTGAGGGTTCCGGCTGGCGGACAGATTTCAATGACCTCCACCGGTGG
GTGCCGAGTGTTCGTGAAGGAAGGAGAATGGCGCTCCTCGTAGGGAGCGA
CACGTTCGAGAAATGGAGTTGGCTGAGGGTTCCGGCTGGCGGACAGATTT
CAATGACCTCCACCGGTGGGTGCCGAGTGTTCGTGAAGGAAGGAGAATGG
CGCTCCTCGTAG
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