mRNA_H-paniculata_contig5873.13488.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5873.13488.1
Unique NamemRNA_H-paniculata_contig5873.13488.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 3.980e-32
Identity = 73/155 (47.10%), Postives = 86/155 (55.48%), Query Frame = 1
Query:    1 MFICAVPRRDPSRDLDGKIGIWCVCVIKQAQRNS-------------AWRERG----------QQCEFDVTINAEWYQEWYKDSFLPALKENIP*------------ATLPTGKDAPPKLNELGRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
            M I A  R DP+ D DGKIGIW +CVI+ AQR+S              WRE            ++ EFD TI+AEWY++WY D  LPA+KE +P             A+  TGK  P  LN  G   GW V LVTQPAQSP+LNINDLG F SLK
Sbjct:  195 MVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLK 349          
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: I6THG9_PSEMU (Tranposase n=1 Tax=Pseudo-nitzschia multiseries TaxID=37319 RepID=I6THG9_PSEMU)

HSP 1 Score: 88.6 bits (218), Expect = 4.150e-18
Identity = 52/137 (37.96%), Postives = 72/137 (52.55%), Query Frame = 1
Query:    1 MFICAV--PRRDPSRD--LDGKIGIWCVCVIKQAQRNSAWRERGQQCEFDV-TINAEWYQEWYKDSFLPALKENIP*A------------TLPTGKDAPPKLNELGRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
            MF+CAV  PR D  R+   DGKIGIW   V + AQRNS  R RG     ++ ++NA  YQ+   +  LPA++E  P                P    +   + E  R+ GWN+ + TQP  SP+ N+ DLGFF S++
Sbjct:  272 MFLCAVARPRHDADRNAGFDGKIGIWPFVVKEPAQRNSVNRPRGTMVTKNIPSVNAAEYQKMMLEKVLPAIQEKFPVCWKSRPIFIQEDNAKPHHLRSRAAVREAAREAGWNITVTTQPPNSPDFNVLDLGFFASIQ 408          
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 5.270e-15
Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = 1
Query:    1 MFICAV--PRRDPS--RDLDGKIGIWCVCVIKQAQRNSAWRERGQQCEFDVTINAEWYQEWYKDSFLPALKENIP*---ATLPTGKDAP--------PKLNELGRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
            MF+CAV  PR D +  +  DGK+G+W     + A+R S  R+RG      +T+    Y+ +  D  +PA++   P    AT+   +D          P++   GR  GWN+ L+ QPAQSP+ N+ DLGFF +++
Sbjct:  209 MFLCAVARPRHDSAHRKMWDGKVGLWPFVETQLAKRRSKNRDRGTPVTVPMTVTKPVYRRFLVDKVIPAIQAQWPGRRGATIYVQQDNAKPHVAVDDPEVLAAGRKEGWNIQLMAQPAQSPDFNVLDLGFFNAIQ 343          
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: A0A397C8F5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C8F5_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.700e-14
Identity = 49/140 (35.00%), Postives = 68/140 (48.57%), Query Frame = 1
Query:    1 MFICAV--PRRDPSRDL--DGKIGIWCVCVIKQAQRNSAWRERGQQCEFDVTINAEWYQEWYKDSFLPALKENIP*ATLPTGKDAP----------------PKLNELGRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
            MF+ AV  PR D  R    DGK+G+W    ++ AQR S  R+RG      VT+  + Y+E+     +P +K     A  P  +D P                P +   GR  GW + LV QPA SP+ N+ DLGFF S++
Sbjct:   74 MFLTAVARPRFDYVRKTMWDGKLGMWPFVAVQPAQRTSKNRDRGTLVTTPVTVTKKVYREYLLQHVIPRIK-----AVWPGHRDQPIYIQQDNARPHVEVDDPAVVAAGRSDGWAIQLVAQPAMSPDFNVLDLGFFNSIQ 208          
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: W4GGI5_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGI5_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 7.490e-14
Identity = 49/135 (36.30%), Postives = 68/135 (50.37%), Query Frame = 1
Query:    1 MFICAV--PRRDPSRDL--DGKIGIWCVCVIKQAQRNSAWRERGQQCEFDVTINAEWYQEWYKDSFLPALKENIP*ATLPT----GKDAPP-------KLNELGRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
            MF+CAV  PR D  R +  DGKIG+W +   K A R S  R+RG      +T+    Y+    D  +PA++   P     T      +A P       ++    R  GWN+ LV QPA SPN N+ DLGFF +++
Sbjct:  142 MFLCAVARPRFDFGRRVMWDGKIGLWPIVETKVAARRSKNRDRGTPVTVPMTVTKPIYRRLLVDKVIPAIQAKWPGQRGGTIYLQQNNARPHVAVDDAEVVAASRKNGWNIQLVAQPAMSPNFNVLDLGFFNAIQ 276          
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: A0A6A4Z9D8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z9D8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.320e-13
Identity = 45/135 (33.33%), Postives = 69/135 (51.11%), Query Frame = 1
Query:    1 MFICAV--PRRDP--SRDLDGKIGIWCVCVIKQAQRNSAWRERGQQCEFDVTINAEWYQEWYKDSFLPALKENIP*A-----------TLPTGKDAPPKLNELGRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
            MF+ AV  PR D    R  DG+IG+W     + A R+S  R+RG       T+  + Y+ +  D  +PA++   P +             P      P +   GR GGW ++L +QPAQSP+LN+ DLG+F +++
Sbjct:   84 MFLTAVARPRYDARNKRMWDGRIGMWPFVKTRPALRSSKNRKRGDDVTEPFTVTRDVYRSFLIDKVIPAVRSKWPSSKKNQIWIQQDNAKPHVSVNDPAVVAAGRQGGWTISLCSQPAQSPDLNVLDLGYFNAIQ 218          
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: A0A2P4X320_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X320_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 9.960e-13
Identity = 48/137 (35.04%), Postives = 70/137 (51.09%), Query Frame = 1
Query:    1 MFICAVPRRDPSRD----LDGKIGIWCVCVIKQAQRNSAWRERGQQCEFDV-TINAEWYQEWYKDSFLPALKENIP*AT-----LPTGKDAPPKLNEL-------GRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
            MF+ AV R   +RD     +GKIGIW +     A R S +RERG+ C+ ++ ++    Y+ +  D  +PA K N P        L    +A P L+         G +G WN+ L+ QP  SP++N  DLG F SL+
Sbjct:  199 MFLAAVARTRYNRDGELVWNGKIGIWPLTEEYVALRRSRYRERGETCQRNIESVTRAVYKTFLLDDVIPATKANWPRREKWRPILIQQDNAKPHLSPFDPDIVAAGTEGEWNIRLLFQPPNSPDMNCLDLGLFASLQ 335          
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: A0A6A5ATA6_9STRA (HTH_Tnp_Tc3_2 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ATA6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.270e-12
Identity = 46/141 (32.62%), Postives = 67/141 (47.52%), Query Frame = 1
Query:    1 MFICAV--PRRDPSRDL--DGKIGIWCVCVIKQAQRNSAWRERGQQCEFDVTINAEWYQEWYKDSFLPALKENIP*ATLPTGKDAPP-----------------KLNELGRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
            MF+ AV  PR D +R    DGK+G+W    ++ AQR S  R RG      + +   +Y+++  D  +PA+K+  P      G  A P                  +   G   GW + LV QPA SP+ N+ DLGFF S++
Sbjct:  209 MFLTAVARPRFDYARKTMWDGKVGMWPFVAVRPAQRKSKNRARGALITTPIVVTKPFYRQYLLDHVIPAIKQAWP------GPRAHPIYIQQDNARPHVEVDDAAVTAAGCSDGWKIQLVAQPAMSPDFNVLDLGFFNSIQ 343          
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: A0A6G0WM27_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WM27_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.590e-12
Identity = 44/135 (32.59%), Postives = 67/135 (49.63%), Query Frame = 1
Query:    1 MFICAV--PRRDPSRD--LDGKIGIWCVCVIKQAQRNSAWRERGQQCEFDVTINAEWYQEWYKDSFLPALKENIP*ATL-----------PTGKDAPPKLNELGRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
            MF+ AV  PR D + +   DGK+G+W   + + A+R S  R R       +++ +E Y +    + LPA+K  +                P  K    + N++G   GWNV L  QPA SP+ N+ DLGFF S++
Sbjct:  218 MFLAAVARPRHDEATNQFFDGKLGMWPFVIQEPAKRTSKNRARDTLISTPISVTSEVYFDMLVSNVLPAIKRKMSFMKNSKIFIQQDNAGPHSKSVNHRFNQVGSYDGWNVALKNQPANSPDFNVLDLGFFNSIQ 352          
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: A0A485KDC6_9STRA (Aste57867_3131 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDC6_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.980e-12
Identity = 48/141 (34.04%), Postives = 69/141 (48.94%), Query Frame = 1
Query:    1 MFICAV--PRRDPS--RDLDGKIGIWCVCVIKQAQRNSAWRERGQQCEFDVTINAEWYQEWYKDSFLPALKENIP*ATLPTGKDAPP-----------------KLNELGRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
            MF+ AV  PR D +  R  DGKIG+W    +  AQR S  RERG      VT+  + Y+E+  +  +P +K+  P      G+ + P                  +   G   GW++ LV QPA SP+ N+ DLGFF S++
Sbjct:  209 MFLTAVARPRYDYTQRRMWDGKIGMWPFVSVVPAQRKSKNRERGTPVTTPVTVTKKVYREYLLEHVIPTIKKVWP------GRRSHPIYIQQDNARPHVEVDDAAVTLAGHSDGWSIQLVAQPAMSPDFNVLDLGFFNSIQ 343          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE3.980e-3247.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
I6THG9_PSEMU4.150e-1837.96Tranposase n=1 Tax=Pseudo-nitzschia multiseries Ta... [more]
A0A6A5AA16_9STRA5.270e-1534.81Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A397C8F5_9STRA5.700e-1435.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4GGI5_9STRA7.490e-1436.30Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
A0A6A4Z9D8_9STRA4.320e-1333.33Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A2P4X320_9STRA9.960e-1335.04Uncharacterized protein n=2 Tax=Phytophthora palmi... [more]
A0A6A5ATA6_9STRA1.270e-1232.62HTH_Tnp_Tc3_2 domain-containing protein (Fragment)... [more]
A0A6G0WM27_9STRA1.590e-1232.59Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A485KDC6_9STRA1.980e-1234.04Aste57867_3131 protein n=1 Tax=Aphanomyces stellat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5873contigH-paniculata_contig5873:8735..9130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5873.13488.1prot_H-paniculata_contig5873.13488.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5873 8879..9130 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930640.4543421-UTR-H-paniculata_contig5873:8734..88781622930640.4543421-UTR-H-paniculata_contig5873:8734..8878Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5873 8735..8878 -
1691481385.1196258-UTR-H-paniculata_contig5873:8734..88781691481385.1196258-UTR-H-paniculata_contig5873:8734..8878Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5873 8735..8878 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930640.469611-CDS-H-paniculata_contig5873:8878..88791622930640.469611-CDS-H-paniculata_contig5873:8878..8879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5873 8879..8879 -
1691481385.1296499-CDS-H-paniculata_contig5873:8878..88791691481385.1296499-CDS-H-paniculata_contig5873:8878..8879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5873 8879..8879 -
1622930640.4833076-CDS-H-paniculata_contig5873:8915..91301622930640.4833076-CDS-H-paniculata_contig5873:8915..9130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5873 8916..9130 -
1691481385.1372297-CDS-H-paniculata_contig5873:8915..91301691481385.1372297-CDS-H-paniculata_contig5873:8915..9130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5873 8916..9130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5873.13488.1

>prot_H-paniculata_contig5873.13488.1 ID=prot_H-paniculata_contig5873.13488.1|Name=mRNA_H-paniculata_contig5873.13488.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MFICAVPRRDPSRDLDGKIGIWCVCVIKQAQRNSAWRERGQQCEFDVTIN
AEWYQEWYKDSFLPALKENIP*
back to top

mRNA from alignment at H-paniculata_contig5873:8735..9130-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5873.13488.1 ID=mRNA_H-paniculata_contig5873.13488.1|Name=mRNA_H-paniculata_contig5873.13488.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=396bp|location=Sequence derived from alignment at H-paniculata_contig5873:8735..9130- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCATTTGCGCCGTTCCTCGTCGAGATCCTTCCCGCGATTTGGACGG CAAGATTGGAATCTGGTGTGTTTGCGTCATCAAGCAGGCGCAGAGGAATT CGGCCTGGCGTGAACGGGGGCAGCAATGCGAGTTCGACGTGACCATTAAC GCCGAGTGGTACCAGGAGTGGTACAAGGACTCTTTTCTCCCAGCATTGAA GGAAAATATACCGTAGTTAGAGGGTGAGGAAGTGGTCGCGTAGCAGGACA GAGCGACCCTCCCCACGGGGAAAGACGCGCCGCCGAAGCTCAACGAACTC GGGAGGGACGGGGGGTGGAACGTCAATCTCGTAACTCAGCCTGCGCAGTC ACCAAATCTCAACATCAACGATTTGGGGTTCTTTGTATCTCTGAAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5873:8735..9130-

>mRNA_H-paniculata_contig5873.13488.1 ID=mRNA_H-paniculata_contig5873.13488.1|Name=mRNA_H-paniculata_contig5873.13488.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig5873:8735..9130- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCATTTGCGCCGTTCCTCGTCGAGATCCTTCCCGCGATTTGGACGG
CAAGATTGGAATCTGGTGTGTTTGCGTCATCAAGCAGGCGCAGAGGAATT
CGGCCTGGCGTGAACGGGGGCAGCAATGCGAGTTCGACGTGACCATTAAC
GCCGAGTGGTACCAGGAGTGGTACAAGGACTCTTTTCTCCCAGCATTGAA
GGAAAATATACCGTAATGTTCATTTGCGCCGTTCCTCGTCGAGATCCTTC
CCGCGATTTGGACGGCAAGATTGGAATCTGGTGTGTTTGCGTCATCAAGC
AGGCGCAGAGGAATTCGGCCTGGCGTGAACGGGGGCAGCAATGCGAGTTC
GACGTGACCATTAACGCCGAGTGGTACCAGGAGTGGTACAAGGACTCTTT
TCTCCCAGCATTGAAGGAAAATATACCGTAAA
back to top