mRNA_H-paniculata_contig58510.13455.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58510.13455.1
Unique NamemRNA_H-paniculata_contig58510.13455.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58510.13455.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.300e-26
Identity = 53/122 (43.44%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    4 GSIVTIKSASFANNVFNCEDGMFLNFSESTSFFETICDGCGGTRCTECKLGTDGNMTPSCSEAIEHSKTNGPNTTLDTLLIDEGYWRSTKNSTDVRACYRADVCKGGITGSPNYCKDGYEGP 369
            G++ + ++ SF+ N F+C  G FL ++ S   FE +C+GC  T C  C    D  + P+C++ +EHS ++    TL+TL I  GYWR+T + T+V ACY AD C GG+TG+  YC +GYEGP
Sbjct: 1079 GTVESTENISFSANGFDCPSGTFLGYNASADLFEAVCNGC-QTACVGCAF-ADPLLVPTCTDLLEHSTSSDGRDTLETLSIQAGYWRATTSGTEVLACYHADACLGGVTGTSGYCLEGYEGP 1198          
BLAST of mRNA_H-paniculata_contig58510.13455.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.010e-24
Identity = 54/123 (43.90%), Postives = 73/123 (59.35%), Query Frame = 1
Query:    4 GSIVTIKSASFANNVFNCEDGMFLNFSES-TSFFETICDGCGGTRCTECKLGTDGNMTPSCSEAIEHSKTNGPNTTLDTLLIDEGYWRSTKNSTDVRACYRADVCKGGITGSPNYCKDGYEGP 369
            G + T+ ++SF  N F C   +FL F  S    FE +CDGC    C  C    +    P+CS+ ++HS + G N TL+TLLID GYWR+T +S  +  CY AD C GG+TG+  YC + YEGP
Sbjct:  954 GLVSTMANSSFTGNGFTCGPDLFLEFDTSGDGTFEAVCDGC-RVACDGCSF-DEQPAVPTCSDVMDHSTSPGGNVTLETLLIDPGYWRATSSSKKILPCYNADACLGGVTGTAGYCLESYEGP 1074          
BLAST of mRNA_H-paniculata_contig58510.13455.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 6.550e-22
Identity = 57/131 (43.51%), Postives = 74/131 (56.49%), Query Frame = 1
Query:    4 GSIVTIKSASFANNVFNCEDGMFLNF---------SESTSFFETICDGCGGTRCTECKLGTDGNMTPSCSEAIEHSKTNGPNTTLDTLLIDEGYWRSTKNSTDVRACYRADVCKGGITGSPNYCKDGYEGP 369
            G I  I + SF+ NVFNC    FLN+         S ST   + + + C G + T C         P CS+ I  S+++G   TL+TLLID GYW +T +ST+V ACY  D C GGITG+  YC +GYEGP
Sbjct:  482 GIISEISNTSFSGNVFNCAPDTFLNYTVRDTMLTCSLSTMSGDPLDEACSGCQAT-CDGCAQPPAVPLCSDVIPDSRSDGGLVTLETLLIDPGYWMATNSSTEVLACYNVDACVGGITGATEYCVEGYEGP 611          
BLAST of mRNA_H-paniculata_contig58510.13455.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.120e-20
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   34 FANNVFNCEDGMFLNFSESTSFFETICDGCGGTRCTECKLGTDGNMTPSCSEAIEHSKTNGPNTTLDTLLIDEGYWRSTKNSTDVRACYRADVCKGGITGSPNYCKDGYEGP 369
            F+ NV +CE+GM+L+ S     ++T+CDGC            +G+  P C   ++H+++ G +TT++TL +  GYWR+T +S +V ACY  D C GG+T  P +C+ GYEGP
Sbjct: 1252 FSGNVLSCENGMYLD-SVDGDRYQTVCDGCPVNNSDWIVSVENGDRVPICVVQLDHTRSEGGDTTIETLELSSGYWRATNDSANVLACYNEDACVGGMTNDPAFCQRGYEGP 1362          
BLAST of mRNA_H-paniculata_contig58510.13455.1 vs. uniprot
Match: D7G3S0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 9.640e-20
Identity = 49/122 (40.16%), Postives = 71/122 (58.20%), Query Frame = 1
Query:   16 TIKSASFANNVFNCEDGMFLNFSES---TSFFETICDGCGG-TRCTECKLGTDGNMTPSCSEAIEHSKTNGPNTTLDTLLIDEGYWRSTKNSTDVRACYRADVCKGGITGSPNYCKDGYEGP 369
            +I  ++F  N  +C  G F + +E     + FET+C  C     C EC +  DG +TP+C   +EH+  +    TL+TL +DEGYWR+T  S  + ACY AD C GG TG+ ++C  GY+GP
Sbjct: 1105 SIHDSTFNGNQLSCGKGWFRSDTEQEDPNARFETVCVDCPAWDECFECII-ADGTITPTCEVPLEHTSADEDGLTLETLKLDEGYWRATTESVIILACYNADACAGGKTGADSFCASGYQGP 1225          
BLAST of mRNA_H-paniculata_contig58510.13455.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 9.590e-17
Identity = 49/120 (40.83%), Postives = 65/120 (54.17%), Query Frame = 1
Query:   43 NVFNCEDGMFLNFSE---STSFFETICDGCGGTRCTECKLGTDGNMTPSCSEAIEHSKTNGPNTTLDTLLIDEGYWRSTKNSTDVRACYRADVCKGGITGSPNYCKDGYEGP----CENR 381
            N   C  G + N +E   +T+ F T+C  C     +     T G +TP C+  +EHS  +    TL+TL ID+GYWR+T  S  + ACY AD C GG TGS ++C  GY GP    CE R
Sbjct:  479 NDLTCAVGSYRNDTEEEGATARFGTVCFDCPPWDDSAGNDITRGTVTPECAAPLEHSSADAVGATLETLSIDKGYWRATNESDRILACYNADACSGGQTGSESFCASGYMGPYCAVCEPR 598          
BLAST of mRNA_H-paniculata_contig58510.13455.1 vs. uniprot
Match: A0A6H5LAD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAD4_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.110e-14
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  100 FETICDGCGG-TRCTECKLGTDGNMTPSCSEAIEHSKTNGPNTTLDTLLIDEGYWRSTKNSTDVRACYRADVCKGGITGSPNYCKDGYEG 366
            FET+C  C     C EC +  DG +TP+C   +EH+  +    TL+TL IDEGYWR+T  S  + A Y A+ C GG TG+ ++C  GY+G
Sbjct:  225 FETVCLECPAWDECFECTI-ADGTVTPTCEVPLEHTAADEDGLTLETLKIDEGYWRATTESVIILASYNANACAGGKTGADSFCASGYQG 313          
BLAST of mRNA_H-paniculata_contig58510.13455.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.540e-8
Identity = 43/126 (34.13%), Postives = 60/126 (47.62%), Query Frame = 1
Query:    4 GSIVTIKSASFANNVFNC---EDGMFLNFSESTSFFETICDGCGGTRCTECKLGTDGNMT-PSCSEAIEHSKTNGPNTTLDTLLIDEGYWRSTKNSTDVRACYRADVCKGGITGSPNYCKDGYEGP 369
            G +    + +FA+N  NC   E+       + +  FE  C  C           T  + T P C E++E +K +   TT+ TL + EGY+R++  S  V  CY    C GG T   NYC DGYEGP
Sbjct:  502 GVVQKALNVAFASNTLNCPPGENAYDKEAEDDSCRFELACARCSADCDAIPSSVTMADSTIPVCVESMEGTKASSSGTTVATLDLQEGYYRTSAESQVVVECYLTSACAGG-TDPKNYCADGYEGP 626          
BLAST of mRNA_H-paniculata_contig58510.13455.1 vs. uniprot
Match: D7FWD7_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD7_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.940e-8
Identity = 44/126 (34.92%), Postives = 60/126 (47.62%), Query Frame = 1
Query:    4 GSIVTIKSASFANNVFNCEDGMFLNFSES---TSFFETICDGCGGTRCTECKLGTDGNMT-PSCSEAIEHSKTNGPNTTLDTLLIDEGYWRSTKNSTDVRACYRADVCKGGITGSPNYCKDGYEGP 369
            G +    + +FA+N  NC  G +    E+   +  FE  C  C           T  + T P C E +E +K +   TT+ TL + EGY+R++  S  V  CY    C GG T   NYC DGYEGP
Sbjct:  261 GVVQQALNVTFASNTLNCPLGEYAYDKEAEDDSCRFELACARCSADCDAIPSSVTMADSTIPVCLELMEGTKASSSGTTVATLDLQEGYYRTSAESQVVVECYLTGACAGG-TDPENYCADGYEGP 385          
BLAST of mRNA_H-paniculata_contig58510.13455.1 vs. uniprot
Match: F0YFV4_AURAN (TRP domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFV4_AURAN)

HSP 1 Score: 56.6 bits (135), Expect = 1.830e-5
Identity = 47/146 (32.19%), Postives = 66/146 (45.21%), Query Frame = 1
Query:  124 GGTRCTECKLG---------TDGNMTPSCSEAIEHSKTNGPNTTLDTLLIDEGYWRSTKNSTDVRACYRADVCKGGITGSPNYCKDGYEGPCENRLFQLLC--CVLCYFSVTKIGQLRLCFRAPQKLQLDLDRSFLRFGTHAALLV 528
            G T C  C+ G          DG+   SC +   H+ T    TT++T+ + +G WR+T  S+ VR C+R D C GG  G+ + C DGY        ++ LC  C   ++     GQ   C  A  +      R F  FG H  LLV
Sbjct:   35 GSTTCDFCEEGLYLADDDTAVDGSRCVSCPD---HA-TCAEGTTIETIAVHDGCWRTTPGSSKVRKCFREDACVGGA-GNASRCADGY--------YKTLCAACERDFYRDMSTGQCHACDAAAARR----FRHF--FGFHVLLLV 161          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58510.13455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LSC0_ECTSI2.300e-2643.44Polymorphic Outer membrane protein G/I family n=3 ... [more]
A0A6H5K7Z1_9PHAE3.010e-2443.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR67_9PHAE6.550e-2243.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY65_9PHAE2.120e-2040.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3S0_ECTSI9.640e-2040.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX12_9PHAE9.590e-1740.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LAD4_9PHAE1.110e-1444.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSF5_9PHAE1.540e-834.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWD7_ECTSI1.940e-834.92Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
F0YFV4_AURAN1.830e-532.19TRP domain-containing protein n=1 Tax=Aureococcus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58510contigH-paniculata_contig58510:28..951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue4.9e-28
Seed eggNOG ortholog2880.D7G2Z8
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size786
Cds size783
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930636.8754735-CDS-H-paniculata_contig58510:27..1141622930636.8754735-CDS-H-paniculata_contig58510:27..114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58510 28..114 +
1691481383.5267012-CDS-H-paniculata_contig58510:27..1141691481383.5267012-CDS-H-paniculata_contig58510:27..114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58510 28..114 +
1622930636.8887897-CDS-H-paniculata_contig58510:254..9501622930636.8887897-CDS-H-paniculata_contig58510:254..950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58510 255..950 +
1691481383.5404792-CDS-H-paniculata_contig58510:254..9501691481383.5404792-CDS-H-paniculata_contig58510:254..950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58510 255..950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58510.13455.1prot_H-paniculata_contig58510.13455.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58510 28..950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58510.13455.1

>prot_H-paniculata_contig58510.13455.1 ID=prot_H-paniculata_contig58510.13455.1|Name=mRNA_H-paniculata_contig58510.13455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=261bp
TGSIVTIKSASFANNVFNCEDGMFLNFSESTSFFETICDGCGGTRCTECK
LGTDGNMTPSCSEAIEHSKTNGPNTTLDTLLIDEGYWRSTKNSTDVRACY
RADVCKGGITGSPNYCKDGYEGPCENRLFQLLCCVLCYFSVTKIGQLRLC
FRAPQKLQLDLDRSFLRFGTHAALLVYPPILHVDIACLENVWLSLGKHCS
AMVCAIVKSYPLPSFNTRLATPSLPALCSLVRSYLSIFGNGAPGAPSVQI
APFARRISLRA
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mRNA from alignment at H-paniculata_contig58510:28..951+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58510.13455.1 ID=mRNA_H-paniculata_contig58510.13455.1|Name=mRNA_H-paniculata_contig58510.13455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=924bp|location=Sequence derived from alignment at H-paniculata_contig58510:28..951+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGGGTCGATTGTAACCATCAAAAGCGCCTCCTTCGCCAACAACGTCTT CAACTGCGAGGACGGGATGTTTCTCAATTTTAGTGAGGTAAGGGTCAAGT GAATTTGATTACTACCCCCGTTCAAATTGCTGTTCGAACTGCATTGGAAA CATAGCAGGACTGTGCAATCGTCTTCACACACAGTCTATGACATTGTGTC TTGCCGCATGTTTTTACCGCGTCGCAGTCGACATCATTCTTCGAAACCAT CTGCGATGGGTGCGGGGGGACAAGGTGCACCGAATGCAAACTTGGCACTG ACGGAAACATGACTCCTTCGTGCAGTGAGGCAATCGAGCACTCAAAGACC AATGGGCCTAACACTACCTTGGACACGTTGCTTATCGATGAAGGATATTG GCGATCAACAAAAAATAGCACAGACGTGCGAGCATGTTACAGAGCTGATG TATGCAAGGGGGGAATAACAGGAAGTCCTAATTACTGCAAAGACGGATAC GAAGGGCCATGTGAGAATCGATTGTTTCAACTGTTGTGTTGTGTTTTGTG CTATTTTAGTGTAACGAAAATAGGCCAATTAAGGTTGTGTTTCCGCGCCC CGCAGAAGTTGCAGCTGGACTTGGACAGGTCGTTTTTGAGATTTGGTACG CATGCTGCCTTGCTCGTCTATCCACCAATACTTCACGTAGATATTGCCTG TCTCGAGAACGTATGGCTAAGTCTGGGAAAACACTGTTCCGCGATGGTCT GTGCAATAGTCAAGAGTTATCCTCTGCCAAGCTTCAACACGAGGTTGGCG ACACCATCGCTTCCTGCTCTTTGTTCGCTTGTACGATCCTATTTAAGCAT CTTCGGTAACGGCGCTCCCGGCGCCCCTTCTGTGCAGATTGCTCCGTTTG CAAGAAGGATTTCACTTCGGGCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig58510:28..951+

>mRNA_H-paniculata_contig58510.13455.1 ID=mRNA_H-paniculata_contig58510.13455.1|Name=mRNA_H-paniculata_contig58510.13455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at H-paniculata_contig58510:28..951+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGGGTCGATTGTAACCATCAAAAGCGCCTCCTTCGCCAACAACGTCTT
CAACTGCGAGGACGGGATGTTTCTCAATTTTAGTGAGACGGGGTCGATTG
TAACCATCAAAAGCGCCTCCTTCGCCAACAACGTCTTCAACTGCGAGGAC
GGGATGTTTCTCAATTTTAGTGAGTCGACATCATTCTTCGAAACCATCTG
CGATGGGTGCGGGGGGACAAGGTGCACCGAATGCAAACTTGGCACTGACG
GAAACATGACTCCTTCGTGCAGTGAGGCAATCGAGCACTCAAAGACCAAT
GGGCCTAACACTACCTTGGACACGTTGCTTATCGATGAAGGATATTGGCG
ATCAACAAAAAATAGCACAGACGTGCGAGCATGTTACAGAGCTGATGTAT
GCAAGGGGGGAATAACAGGAAGTCCTAATTACTGCAAAGACGGATACGAA
GGGCCATGTGAGAATCGATTGTTTCAACTGTTGTGTTGTGTTTTGTGCTA
TTTTAGTGTAACGAAAATAGGCCAATTAAGGTTGTGTTTCCGCGCCCCGC
AGAAGTTGCAGCTGGACTTGGACAGGTCGTTTTTGAGATTTGGTACGCAT
GCTGCCTTGCTCGTCTATCCACCAATACTTCACGTAGATATTGCCTGTCT
CGAGAACGTATGGCTAAGTCTGGGAAAACACTGTTCCGCGATGGTCTGTG
CAATAGTCAAGAGTTATCCTCTGCCAAGCTTCAACACGAGGTTGGCGACA
CCATCGCTTCCTGCTCTTTGTTCGCTTGTACGATCCTATTTAAGCATCTT
CGGTAACGGCGCTCCCGGCGCCCCTTCTGTGCAGATTGCTCCGTTTGCAA
GAAGGATTTCACTTCGGGCCTCGACATCATTCTTCGAAACCATCTGCGAT
GGGTGCGGGGGGACAAGGTGCACCGAATGCAAACTTGGCACTGACGGAAA
CATGACTCCTTCGTGCAGTGAGGCAATCGAGCACTCAAAGACCAATGGGC
CTAACACTACCTTGGACACGTTGCTTATCGATGAAGGATATTGGCGATCA
ACAAAAAATAGCACAGACGTGCGAGCATGTTACAGAGCTGATGTATGCAA
GGGGGGAATAACAGGAAGTCCTAATTACTGCAAAGACGGATACGAAGGGC
CATGTGAGAATCGATTGTTTCAACTGTTGTGTTGTGTTTTGTGCTATTTT
AGTGTAACGAAAATAGGCCAATTAAGGTTGTGTTTCCGCGCCCCGCAGAA
GTTGCAGCTGGACTTGGACAGGTCGTTTTTGAGATTTGGTACGCATGCTG
CCTTGCTCGTCTATCCACCAATACTTCACGTAGATATTGCCTGTCTCGAG
AACGTATGGCTAAGTCTGGGAAAACACTGTTCCGCGATGGTCTGTGCAAT
AGTCAAGAGTTATCCTCTGCCAAGCTTCAACACGAGGTTGGCGACACCAT
CGCTTCCTGCTCTTTGTTCGCTTGTACGATCCTATTTAAGCATCTTCGGT
AACGGCGCTCCCGGCGCCCCTTCTGTGCAGATTGCTCCGTTTGCAAGAAG
GATTTCACTTCGGGCC
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