mRNA_H-paniculata_contig58413.13448.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58413.13448.1
Unique NamemRNA_H-paniculata_contig58413.13448.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58413.13448.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.700e-8
Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    7 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSL 234
            W+ DSGATAHMTP    +F+YE    N+ VT+A+G+ + + G G + +   D   I    +  V H+PGLD  L S+
Sbjct:  263 WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSV 336          
BLAST of mRNA_H-paniculata_contig58413.13448.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.720e-8
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 1
Query:    7 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSL 234
            W+ DSGATAHMTP  E +FDY+   +++ VT+A+G+ + + G G + +   D   I       V H+PGLD  L S+
Sbjct:  160 WLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSV 233          
BLAST of mRNA_H-paniculata_contig58413.13448.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 8.460e-8
Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 1
Query:    7 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSL 234
            W+ DSGATAHMTP  + +F+Y   S +++VT+A+G+ + + G G + +   D   I    +  V ++PGLD  L S+
Sbjct:  245 WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSV 318          
BLAST of mRNA_H-paniculata_contig58413.13448.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 9.090e-8
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    7 WVADSGATAHMTPSNELMFDYE-TCSNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSL 234
            W+ DSGAT+HMTP  E +FD E T S++ VT+A+G+ L + G G + + + +   I    +  V ++PGLD  L S+
Sbjct:  155 WLIDSGATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAGQGTVRLTSLNGKHI---KMMEVLYIPGLDRRLLSV 228          
BLAST of mRNA_H-paniculata_contig58413.13448.1 vs. uniprot
Match: A0A225VGX0_9STRA (Integrase, catalytic core protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VGX0_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 5.900e-7
Identity = 29/77 (37.66%), Postives = 46/77 (59.74%), Query Frame = 1
Query:    7 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSL 234
            W+ DSGATAHMTP  + ++++ T  ++++VT+A G+ + I G G + +   D   I    +  V HVPG D  L S+
Sbjct:  232 WLIDSGATAHMTPHRDDLYEFSTMPADMYVTIAAGKKIRIAGTGSVRLKGIDGKSIR---MVEVLHVPGFDRRLLSV 305          
BLAST of mRNA_H-paniculata_contig58413.13448.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 7.850e-7
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    7 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSL 234
            W+ DSGATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G + +   D   I       V ++PGLD  L S+
Sbjct:  266 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSV 339          
BLAST of mRNA_H-paniculata_contig58413.13448.1 vs. uniprot
Match: A0A6A4BQ03_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BQ03_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 8.090e-7
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    7 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSL 234
            W+ DSGATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G + +   D   I       V ++PGLD  L S+
Sbjct:  242 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSV 315          
BLAST of mRNA_H-paniculata_contig58413.13448.1 vs. uniprot
Match: A0A225V0K2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V0K2_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.470e-6
Identity = 27/77 (35.06%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    7 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSL 234
            W+ DSGAT HMTP  + +++Y T  ++++V +A+G+ + + G G + +   D   I    +  V HVPG D  L S+
Sbjct:  169 WLIDSGATVHMTPHRDDLYEYSTIPADMYVAIADGKKIRVAGTGSVRLKGIDGKSIR---MVEVLHVPGFDRRLLSV 242          
BLAST of mRNA_H-paniculata_contig58413.13448.1 vs. uniprot
Match: A0A4Y2F840_ARAVE (Uncharacterized protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2F840_ARAVE)

HSP 1 Score: 52.0 bits (123), Expect = 1.530e-6
Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 1
Query:    1 EFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSL 234
            + W+ADSGA+ HMTP  E    YE+ S+   V + N ET+   G G + V     G+     LS V  VP +  NLFS+
Sbjct:   10 DMWLADSGASVHMTPQKEYFLSYESFSSPKDVKIGNNETMFAFGLGTVKVRMLVSGKWENNHLSDVWFVPEVSRNLFSV 88          
BLAST of mRNA_H-paniculata_contig58413.13448.1 vs. uniprot
Match: UPI0005F40DD4 (uncharacterized protein LOC105568084 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F40DD4)

HSP 1 Score: 53.5 bits (127), Expect = 1.950e-6
Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 1
Query:    7 WVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSL 234
            W+ADSGA+AH+T   E    +E+ S  F ++ANGE + I G G++ V     G+    +L +V  + G   NLFS+
Sbjct:  252 WLADSGASAHVTGRREWFSQFESTSTKF-SLANGEQVSIHGRGEVEVECLVEGKWQSVTLKKVFFISGFKKNLFSI 326          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58413.13448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A329SN38_9STRA4.700e-840.26Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A3M6VPY8_9STRA4.720e-840.26CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A225UGS0_9STRA8.460e-837.66Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A2P4XNP3_9STRA9.090e-840.26Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A225VGX0_9STRA5.900e-737.66Integrase, catalytic core protein n=1 Tax=Phytopht... [more]
A0A6A3X5U6_9STRA7.850e-738.96CCHC-type domain-containing protein n=5 Tax=Phytop... [more]
A0A6A4BQ03_9STRA8.090e-738.96Retrovirus-related Pol polyprotein from transposon... [more]
A0A225V0K2_9STRA1.470e-635.06Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A4Y2F840_ARAVE1.530e-639.24Uncharacterized protein n=1 Tax=Araneus ventricosu... [more]
UPI0005F40DD41.950e-638.16uncharacterized protein LOC105568084 n=1 Tax=Volle... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58413contigH-paniculata_contig58413:759..995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930635.9795268-CDS-H-paniculata_contig58413:758..9951622930635.9795268-CDS-H-paniculata_contig58413:758..995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58413 759..995 +
1691481383.1039133-CDS-H-paniculata_contig58413:758..9951691481383.1039133-CDS-H-paniculata_contig58413:758..995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58413 759..995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58413.13448.1prot_H-paniculata_contig58413.13448.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58413 759..995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58413.13448.1

>prot_H-paniculata_contig58413.13448.1 ID=prot_H-paniculata_contig58413.13448.1|Name=mRNA_H-paniculata_contig58413.13448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
EFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVW
TKDRGEIHKFSLSRVAHVPGLDTNLFSLH
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mRNA from alignment at H-paniculata_contig58413:759..995+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58413.13448.1 ID=mRNA_H-paniculata_contig58413.13448.1|Name=mRNA_H-paniculata_contig58413.13448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=237bp|location=Sequence derived from alignment at H-paniculata_contig58413:759..995+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACCCCGTCTAA CGAATTAATGTTTGATTACGAAACCTGCAGTAATTTGTTTGTGACAGTGG CTAACGGCGAAACGCTTCCGATTGAGGGATATGGTAAGATGTTGGTATGG ACGAAGGATCGGGGCGAGATACACAAATTCAGCTTGAGTCGTGTAGCGCA TGTTCCGGGCCTGGACACAAATTTGTTTTCCCTACAT
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Coding sequence (CDS) from alignment at H-paniculata_contig58413:759..995+

>mRNA_H-paniculata_contig58413.13448.1 ID=mRNA_H-paniculata_contig58413.13448.1|Name=mRNA_H-paniculata_contig58413.13448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig58413:759..995+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACCCCGTCTAA
CGAATTAATGTTTGATTACGAAACCTGCAGTAATTTGTTTGTGACAGTGG
CTAACGGCGAAACGCTTCCGATTGAGGGATATGGTAAGATGTTGGTATGG
ACGAAGGATCGGGGCGAGATACACAAATTCAGCTTGAGTCGTGTAGCGCA
TGTTCCGGGCCTGGACACAAATTTGTTTTCCCTACATGAGTTTTGGGTGG
CCGACAGTGGGGCTACGGCCCACATGACCCCGTCTAACGAATTAATGTTT
GATTACGAAACCTGCAGTAATTTGTTTGTGACAGTGGCTAACGGCGAAAC
GCTTCCGATTGAGGGATATGGTAAGATGTTGGTATGGACGAAGGATCGGG
GCGAGATACACAAATTCAGCTTGAGTCGTGTAGCGCATGTTCCGGGCCTG
GACACAAATTTGTTTTCCCTACAT
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