mRNA_H-paniculata_contig58344.13439.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: A0A8F0F7A3_9PHAE (Uncharacterized protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7A3_9PHAE) HSP 1 Score: 177 bits (448), Expect = 8.440e-56 Identity = 81/95 (85.26%), Postives = 86/95 (90.53%), Query Frame = 1
Query: 4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLANF 288
IWG+ +IGLAVDK++NKDI PLTTFFFWPRENGWELLK+ELSNKPWITKEDRI ILNGYT IINYWL NVQ EGITKLVQDSS YNFELLANF
Sbjct: 17 IWGRSYIGLAVDKRLNKDIMIPLTTFFFWPRENGWELLKMELSNKPWITKEDRIEILNGYTLIINYWLSNVQEVEGITKLVQDSSIYNFELLANF 111
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: A0A8E5XRJ5_9PHAE (Uncharacterized protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRJ5_9PHAE) HSP 1 Score: 147 bits (372), Expect = 3.260e-44 Identity = 63/94 (67.02%), Postives = 80/94 (85.11%), Query Frame = 1
Query: 4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLAN 285
IWGK ++GLAVD++I ++T P+T+ FFWPRENGWELL+ ELS+KPW+TKE+RI ILNGYT+IINYWL NV+ EGITKL+QDS Y F+L+ N
Sbjct: 17 IWGKNYLGLAVDRQIPNNLTSPITSLFFWPRENGWELLRAELSDKPWMTKEERIEILNGYTKIINYWLENVKEIEGITKLIQDSKKYKFKLVGN 110
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: A0A8F0FAW0_9PHAE (Uncharacterized protein n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0FAW0_9PHAE) HSP 1 Score: 145 bits (365), Expect = 3.360e-43 Identity = 64/95 (67.37%), Postives = 78/95 (82.11%), Query Frame = 1
Query: 4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLANF 288
IW K ++GLAVDKK+ + T P+TTFFFWPRENGW+LLK ELS KPW++K+D I ILNGYT+IINYWL+NV EGITKL++DSS FEL+A F
Sbjct: 13 IWSKNYLGLAVDKKLPNNHTLPVTTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNGYTEIINYWLLNVNEIEGITKLIRDSSKLKFELVAKF 107
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: A0A8F0FAU8_9PHAE (Uncharacterized protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAU8_9PHAE) HSP 1 Score: 144 bits (362), Expect = 9.350e-43 Identity = 63/95 (66.32%), Postives = 77/95 (81.05%), Query Frame = 1
Query: 4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLANF 288
IW K ++GLAVDKK+ + T P+TTFFFWPRENGW+LLK ELS KPWI+K++ I ILNGY+ +INYWL NV EGIT+L++DSS NFELLA F
Sbjct: 12 IWSKNYLGLAVDKKLQNNHTVPITTFFFWPRENGWQLLKEELSYKPWISKDESIDILNGYSNLINYWLKNVNEIEGITRLIRDSSNLNFELLAKF 106
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: A0A0R6M0Q9_UNDPI (Putative plastid-specific 30S ribosomal protein n=26 Tax=Laminariales TaxID=2886 RepID=A0A0R6M0Q9_UNDPI) HSP 1 Score: 143 bits (361), Expect = 1.330e-42 Identity = 63/95 (66.32%), Postives = 76/95 (80.00%), Query Frame = 1
Query: 4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLANF 288
IW K ++GLAVDKK+ + T P+TTFFFWPRENGW+LLK ELS KPW++K+D I ILN YT+IINYWLVNV +GI KL++DSS FELLA F
Sbjct: 12 IWSKNYLGLAVDKKLQNNRTLPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNAYTEIINYWLVNVNEVQGIAKLIKDSSKLKFELLAKF 106
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: A0A0Y0KCK9_9PHAE (Ycf65 n=12 Tax=Sargassum TaxID=3015 RepID=A0A0Y0KCK9_9PHAE) HSP 1 Score: 142 bits (359), Expect = 3.220e-42 Identity = 65/93 (69.89%), Postives = 74/93 (79.57%), Query Frame = 1
Query: 4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLA 282
IW K ++GLAVDKK+ + T PLTTFFFWPRENGW+LLK ELS KPWI+KED I ILNGY +IINYW+ NV EGI KL+ DSS NFELLA
Sbjct: 18 IWSKNYLGLAVDKKLQSNQTLPLTTFFFWPRENGWQLLKEELSCKPWISKEDSIDILNGYNEIINYWIENVNKMEGIKKLIVDSSELNFELLA 110
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: D1GJM8_FUCVE (Conserved hypothetical plastid protein n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJM8_FUCVE) HSP 1 Score: 141 bits (356), Expect = 7.910e-42 Identity = 65/95 (68.42%), Postives = 74/95 (77.89%), Query Frame = 1
Query: 4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLANF 288
IW K ++GLAVDKK+ + T PLTTFFFWPRENGW+LLK ELS KPWI+KED I ILN Y +IINYWL NV +GI KL+ DSS NFELLA F
Sbjct: 13 IWSKNYLGLAVDKKLQNNQTLPLTTFFFWPRENGWQLLKEELSCKPWISKEDSIDILNSYNEIINYWLRNVNKMKGIKKLILDSSKLNFELLAKF 107
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: A0A1L2F1K2_9PHAE (Ycf65 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1K2_9PHAE) HSP 1 Score: 140 bits (354), Expect = 1.860e-41 Identity = 65/93 (69.89%), Postives = 74/93 (79.57%), Query Frame = 1
Query: 4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLA 282
IW K ++ LAVDKK+ + T PLTTFFFWPRENGW+LLK ELS KPWI+KED I ILNGY++IINYW+ NV EGI KLV DSS NFELLA
Sbjct: 18 IWSKNYLALAVDKKLQSNQTLPLTTFFFWPRENGWQLLKEELSCKPWISKEDSIDILNGYSEIINYWVKNVSKMEGIRKLVLDSSKLNFELLA 110
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: D1J701_ECTSI (Probable plastid-specific 30S ribosomal protein n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J701_ECTSI) HSP 1 Score: 140 bits (352), Expect = 3.120e-41 Identity = 61/95 (64.21%), Postives = 74/95 (77.89%), Query Frame = 1
Query: 4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLANF 288
+W K ++GLAVDKK+ + T P+TTFFFWPRENGW+LLK ELS KPW++K+D I ILN YT IINYWL NV EGITKL++DSS +ELL F
Sbjct: 12 LWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDEVEGITKLIRDSSKLKYELLGKF 106
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: A0A1I9LVY6_9PHAE (Putative plastid-specific 30S ribosomal protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVY6_9PHAE) HSP 1 Score: 137 bits (344), Expect = 5.170e-40 Identity = 58/95 (61.05%), Postives = 74/95 (77.89%), Query Frame = 1
Query: 4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLANF 288
+WGK ++GLAVDKK+ + T P+TTFFFWPRENGW+LLK ELS KPW++K++ I ILN YT +INYWL NV EGI KL++DS+ +ELL F
Sbjct: 12 LWGKSYLGLAVDKKLQNNYTIPITTFFFWPRENGWQLLKEELSYKPWMSKDESIDILNNYTILINYWLTNVDKVEGIKKLIRDSAKLKYELLGKF 106 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig58344.13439.1 >prot_H-paniculata_contig58344.13439.1 ID=prot_H-paniculata_contig58344.13439.1|Name=mRNA_H-paniculata_contig58344.13439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp FIWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITback to top mRNA from alignment at H-paniculata_contig58344:55..345+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig58344.13439.1 ID=mRNA_H-paniculata_contig58344.13439.1|Name=mRNA_H-paniculata_contig58344.13439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at H-paniculata_contig58344:55..345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig58344:55..345+ >mRNA_H-paniculata_contig58344.13439.1 ID=mRNA_H-paniculata_contig58344.13439.1|Name=mRNA_H-paniculata_contig58344.13439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig58344:55..345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |