mRNA_H-paniculata_contig5812.13413.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5812.13413.1
Unique NamemRNA_H-paniculata_contig5812.13413.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5812.13413.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.990e-12
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:   67 GVSLEFASTNTPQKIGLSERVGRTLAVMVRCMLAHGGLPKFIWGELMFTA 216
            G+ L FASTNTPQ+IG +ER+GRTLA MVRC+LA  GLP F+W EL  TA
Sbjct:  413 GIKLLFASTNTPQRIGANERIGRTLAGMVRCLLADSGLPHFLWEELFMTA 462
[Close]
BLAST of mRNA_H-paniculata_contig5812.13413.1 vs. uniprot
Match: A0A6H5KIP3_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP3_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.750e-10
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:   61 QTGVSLEFASTNTPQKIGLSERVGRTLAVMVRCMLAHGGLPKFIWGELMFTA----HDTPRLACSSHT 252
            ++ + LEFA+TNTPQ+IG+SER G+TLA + R +L  G  PK IWGELM TA    + TP  A    T
Sbjct:  302 ESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHIWGELMMTAAYLTNRTPHAALGGAT 369
[Close]
BLAST of mRNA_H-paniculata_contig5812.13413.1 vs. uniprot
Match: A0A6H5JRM5_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRM5_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.770e-10
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   61 QTGVSLEFASTNTPQKIGLSERVGRTLAVMVRCMLAHGGLPKFIWGELMFTA 216
            ++ + LEFA+TNTPQ+IG+SER G+TLA + R +L  GG PK +WGE+M TA
Sbjct:  655 ESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLREGGFPKHMWGEVMMTA 706
[Close]
BLAST of mRNA_H-paniculata_contig5812.13413.1 vs. uniprot
Match: A0A6H5JVM6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVM6_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.800e-10
Identity = 46/116 (39.66%), Postives = 59/116 (50.86%), Query Frame = 1 
Query:   61 QTGVSLEFASTNTPQKIGLSERVGRTLAVMVRCMLAHGGLPKFIWGELMFTA----HDTPRLACSSHTTCCTKEIQNYHKRGLYPGADRRRTFRKEAF----RRKKCIQRRAFSAR 384
            ++ + LEFA+TNTPQ+IG+SER G+TLA + R +L  G  PK +WGELM TA    + TP  A    T              L P   R R     AF    R KK +  RAF  +
Sbjct:  236 ESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLXPYLSRLRVIGARAFVHHERYKKKLDDRAFEGK 351
[Close]
BLAST of mRNA_H-paniculata_contig5812.13413.1 vs. uniprot
Match: A0A6H5L4Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y1_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.330e-10
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:   58 LQTGVSLEFASTNTPQKIGLSERVGRTLAVMVRCMLAHGGLPKFIWGELMFTA----HDTPRLACSSHT 252
            +++ + LEFA+TNTPQ+IG+SER G+TLA + R +L  G  PK +WGELM TA    + TP  A    T
Sbjct:  566 VESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGAT 634
[Close]
BLAST of mRNA_H-paniculata_contig5812.13413.1 vs. uniprot
Match: A0A6H5JPP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP8_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.340e-10
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:   58 LQTGVSLEFASTNTPQKIGLSERVGRTLAVMVRCMLAHGGLPKFIWGELMFTA----HDTPRLACSSHT 252
            +++ + LEFA+TNTPQ+IG+SER G+TLA + R +L  G  PK +WGELM TA    + TP  A    T
Sbjct:  651 VESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGAT 719
[Close]
BLAST of mRNA_H-paniculata_contig5812.13413.1 vs. uniprot
Match: A0A6H5JQY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY8_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.040e-10
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:   61 QTGVSLEFASTNTPQKIGLSERVGRTLAVMVRCMLAHGGLPKFIWGELMFTA----HDTPRLACSSHT 252
            ++ + LEFA+TNTPQ+IG+SER G+TLA + R +L  G  PK +WGELM TA    + TP  A    T
Sbjct:  384 ESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGAT 451
[Close]
BLAST of mRNA_H-paniculata_contig5812.13413.1 vs. uniprot
Match: A0A6H5JHK1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.140e-10
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:   61 QTGVSLEFASTNTPQKIGLSERVGRTLAVMVRCMLAHGGLPKFIWGELMFTA----HDTPRLACSSHT 252
            ++ + LEFA+TNTPQ+IG+SER G+TLA + R +L  G  PK +WGELM TA    + TP  A    T
Sbjct:  386 ESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGAT 453
[Close]
BLAST of mRNA_H-paniculata_contig5812.13413.1 vs. uniprot
Match: A0A6H5JCI9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCI9_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 4.190e-10
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   61 QTGVSLEFASTNTPQKIGLSERVGRTLAVMVRCMLAHGGLPKFIWGELMFT-AHDTPRLA 237
            ++ + LEFA+TNTPQ+IG+SER G+TLA + R +L  G  PK +WGELM T A+ T R+A
Sbjct:  202 ESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTTAYLTNRIA 261
[Close]
BLAST of mRNA_H-paniculata_contig5812.13413.1 vs. uniprot
Match: A0A6H5L4X4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X4_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.200e-10
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:   61 QTGVSLEFASTNTPQKIGLSERVGRTLAVMVRCMLAHGGLPKFIWGELMFTA----HDTPRLACSSHT 252
            ++ + LEFA+TNTPQ+IG+SER G+TLA + R +L  G  PK +WGELM TA    + TP  A    T
Sbjct:  307 ESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGAT 374
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5812.13413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE2.990e-1268.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIP3_9PHAE1.750e-1051.47Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JRM5_9PHAE1.770e-1057.69Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JVM6_9PHAE1.800e-1039.66Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L4Y1_9PHAE3.330e-1049.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPP8_9PHAE3.340e-1049.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQY8_9PHAE4.040e-1050.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHK1_9PHAE4.140e-1050.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JCI9_9PHAE4.190e-1055.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L4X4_9PHAE4.200e-1050.00Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5812contigH-paniculata_contig5812:3236..3752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size518
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930632.0804534-CDS-H-paniculata_contig5812:3235..37511622930632.0804534-CDS-H-paniculata_contig5812:3235..3751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5812 3236..3751 +
1691481381.2928698-CDS-H-paniculata_contig5812:3235..37511691481381.2928698-CDS-H-paniculata_contig5812:3235..3751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5812 3236..3751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5812.13413.1prot_H-paniculata_contig5812.13413.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5812 3236..3751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5812.13413.1

>prot_H-paniculata_contig5812.13413.1 ID=prot_H-paniculata_contig5812.13413.1|Name=mRNA_H-paniculata_contig5812.13413.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=172bp
RARGPRKGASTSTRNSRTLLQTGVSLEFASTNTPQKIGLSERVGRTLAVM
VRCMLAHGGLPKFIWGELMFTAHDTPRLACSSHTTCCTKEIQNYHKRGLY
PGADRRRTFRKEAFRRKKCIQRRAFSARGSAPGEHSARGQYRTTATTSKP
VSPEGPPMKAPLTRSSPLRQRG
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mRNA from alignment at H-paniculata_contig5812:3236..3752+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5812.13413.1 ID=mRNA_H-paniculata_contig5812.13413.1|Name=mRNA_H-paniculata_contig5812.13413.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=517bp|location=Sequence derived from alignment at H-paniculata_contig5812:3236..3752+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGCTCGAGGGCCAAGAAAAGGGGCGAGTACGTCGACAAGGAATTCCAG
GACGTTGCTACAGACGGGGGTGTCGCTCGAGTTCGCCAGCACCAACACGC
CGCAGAAAATTGGCCTATCCGAACGCGTCGGACGAACTCTTGCGGTTATG
GTTCGGTGTATGCTTGCCCACGGCGGACTACCAAAGTTTATCTGGGGAGA
ACTGATGTTCACAGCCCACGACACTCCGCGATTGGCATGCAGTTCCCATA
CAACATGCTGCACAAAGGAGATTCAAAACTACCACAAGAGGGGACTCTAT
CCGGGGGCGGACCGACGAAGGACATTCCGGAAGGAGGCGTTCCGCAGGAA
GAAGTGTATCCAGAGAAGGGCCTTCTCTGCCCGGGGTAGCGCCCCAGGAG
AGCATTCCGCAAGAGGGCAGTATCGAACCACCGCAACAACCAGTAAACCA
GTGTCGCCCGAGGGACCTCCCATGAAAGCACCACTGACTAGATCATCGCC
ACTTCGACAGCGTGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5812:3236..3752+

>mRNA_H-paniculata_contig5812.13413.1 ID=mRNA_H-paniculata_contig5812.13413.1|Name=mRNA_H-paniculata_contig5812.13413.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at H-paniculata_contig5812:3236..3752+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGCTCGAGGGCCAAGAAAAGGGGCGAGTACGTCGACAAGGAATTCCAG
GACGTTGCTACAGACGGGGGTGTCGCTCGAGTTCGCCAGCACCAACACGC
CGCAGAAAATTGGCCTATCCGAACGCGTCGGACGAACTCTTGCGGTTATG
GTTCGGTGTATGCTTGCCCACGGCGGACTACCAAAGTTTATCTGGGGAGA
ACTGATGTTCACAGCCCACGACACTCCGCGATTGGCATGCAGTTCCCATA
CAACATGCTGCACAAAGGAGATTCAAAACTACCACAAGAGGGGACTCTAT
CCGGGGGCGGACCGACGAAGGACATTCCGGAAGGAGGCGTTCCGCAGGAA
GAAGTGTATCCAGAGAAGGGCCTTCTCTGCCCGGGGTAGCGCCCCAGGAG
AGCATTCCGCAAGAGGGCAGTATCGAACCACCGCAACAACCAGTAAACCA
GTGTCGCCCGAGGGACCTCCCATGAAAGCACCACTGACTAGATCATCGCC
ACTTCGACAGCGTGGGAGAGCTCGAGGGCCAAGAAAAGGGGCGAGTACGT
CGACAAGGAATTCCAGGACGTTGCTACAGACGGGGGTGTCGCTCGAGTTC
GCCAGCACCAACACGCCGCAGAAAATTGGCCTATCCGAACGCGTCGGACG
AACTCTTGCGGTTATGGTTCGGTGTATGCTTGCCCACGGCGGACTACCAA
AGTTTATCTGGGGAGAACTGATGTTCACAGCCCACGACACTCCGCGATTG
GCATGCAGTTCCCATACAACATGCTGCACAAAGGAGATTCAAAACTACCA
CAAGAGGGGACTCTATCCGGGGGCGGACCGACGAAGGACATTCCGGAAGG
AGGCGTTCCGCAGGAAGAAGTGTATCCAGAGAAGGGCCTTCTCTGCCCGG
GGTAGCGCCCCAGGAGAGCATTCCGCAAGAGGGCAGTATCGAACCACCGC
AACAACCAGTAAACCAGTGTCGCCCGAGGGACCTCCCATGAAAGCACCAC
TGACTAGATCATCGCCACTTCGACAGCGTGGG
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