mRNA_H-paniculata_contig5799.13392.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5799.13392.1
Unique NamemRNA_H-paniculata_contig5799.13392.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5799.13392.1 vs. uniprot
Match: A0A6H5KBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF2_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.600e-16
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:  193 PSFVVYTEGVLRWLGVEGVTPEVLRRAKRGLQEKEVAAKMWRALLLVSLLHLDA 354
            P FVV+ E V +W+GVEG+TPEVLRRAKRGL+E+ VA KMWRALL V+LLHLDA
Sbjct:  238 PGFVVHAEEVFKWMGVEGLTPEVLRRAKRGLREEAVAGKMWRALLRVALLHLDA 291
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5799.13392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KBF2_9PHAE3.600e-1674.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5799contigH-paniculata_contig5799:5277..7210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_004250.1
Exons3
Model size655
Cds size651
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5799.13392.1prot_H-paniculata_contig5799.13392.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5799 5277..7208 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930629.0798392-CDS-H-paniculata_contig5799:5276..53101622930629.0798392-CDS-H-paniculata_contig5799:5276..5310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5799 5277..5310 +
1691481379.9343915-CDS-H-paniculata_contig5799:5276..53101691481379.9343915-CDS-H-paniculata_contig5799:5276..5310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5799 5277..5310 +
1622930629.0980287-CDS-H-paniculata_contig5799:5982..62481622930629.0980287-CDS-H-paniculata_contig5799:5982..6248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5799 5983..6248 +
1691481379.9507687-CDS-H-paniculata_contig5799:5982..62481691481379.9507687-CDS-H-paniculata_contig5799:5982..6248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5799 5983..6248 +
1622930629.1094372-CDS-H-paniculata_contig5799:6857..72081622930629.1094372-CDS-H-paniculata_contig5799:6857..7208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5799 6858..7208 +
1691481379.9628446-CDS-H-paniculata_contig5799:6857..72081691481379.9628446-CDS-H-paniculata_contig5799:6857..7208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5799 6858..7208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5799.13392.1

>prot_H-paniculata_contig5799.13392.1 ID=prot_H-paniculata_contig5799.13392.1|Name=mRNA_H-paniculata_contig5799.13392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp
DSATANKTGQRARRNIMPRYGIVDTGDTSGHPRDRERATEPTYRRSLPGG
RDGARGDGKESPQPPSFVVYTEGVLRWLGVEGVTPEVLRRAKRGLQEKEV
AAKMWRALLLVSLLHLDAISNDCSTPSTVSEPLSGSVSGTTSASFTGSGT
KTAFSRHRVETQRGLQHKQELDGPPHATATGTVRAEASTRGGRGGGGAGV
GYVSLGVAAQACGSLLR
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mRNA from alignment at H-paniculata_contig5799:5277..7210+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5799.13392.1 ID=mRNA_H-paniculata_contig5799.13392.1|Name=mRNA_H-paniculata_contig5799.13392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1934bp|location=Sequence derived from alignment at H-paniculata_contig5799:5277..7210+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGCGCTACAGCCAACAAGACAGGGCAACGAGGTGAAGATACTGCATG
CACTACGATGTTTGGTGTACTGTTCAGTTGTCGCTTTGTATCGTTTGGCA
TTAATATGTGAAAGTTGAGGGCTCGACAGCGTTTAGTAGCCGTTTCAAGT
CCAGGGACACTCACTGACCTACAACAGTCACTACTCACAGACAGGAATAT
CAAGTCACATGCAGTATTTCATTTAGATACAGGCAGTTTGAATTCGTCTG
CTTAGGGCCAGGCAGGAGGAGAGCATGCCGTCAATCAACACCACTGCATC
CTATACTTTGTGATGCTTGGGGTTTGACTACACAATTTGGCTTTAGCCCC
CGAGGCTGCTTCGGAACAAAAGACACCTAGCGCGATCTCACAATAAATGA
AAGTCGAGCGCTGCAGTCGTTTCTGATGGGATGCCAACTAGCCGTCTGTT
GTATGCATAATCTGTACTAGCTTGTCTGAACAACGACAGCTCCTTATCCC
CGTGTTTCCCTGCTCGAGGTACTTCTAGGGATGAGATGGGGACTATCGTA
CCGTAGATGGACCTCTATAACGACTAAGGTGACTAGTCACACGTAAGTTC
AATGGAACAAAGTTCAAAATTTTGCTGAATGCATGCACCCAACACTCATT
ACATATCTCACGATATTTTGTCGTGTTTCATGACGTGTTTTAACCCAATC
GTATAGCCCGAAGGAATATAATGCCTCGATATGGAATCGTCGACACCGGG
GACACTTCAGGCCACCCGCGCGATAGAGAACGAGCCACTGAGCCGACCTA
CAGGAGATCACTTCCGGGTGGACGAGACGGTGCACGAGGCGACGGGAAGG
AGTCACCTCAGCCCCCGAGTTTTGTGGTCTATACGGAAGGAGTGCTGCGA
TGGCTTGGGGTGGAGGGGGTGACACCGGAGGTACTTCGCCGAGCCAAGCG
CGGGCTTCAAGAGAAGGAAGTGGTGAGGTGTACTCTGCTGCATGGTAGGC
AGTGTGTCTGCTTTGGTTTGCTTGGTCGGGTGGTATCTTTGTTCCCCATG
CTTTCATTTTATAAGAGTTCAAGATCGTAGTTGGAGCTGGATGCTCGTGT
TAGGAAACTGGGGGATTTTTGGTTCGTCTACCTATCCGTAATGCATTGAT
ACTTTCCGTCGTGTTTTAGTGCTTACGAATATCGAGGTCGTTTCGTTTCA
ATGTCCGGAATAGACGTGTAAATACAAACCCTTGGTGTATTCGCCACGAA
AATTTAGGAGTATTCGCCTGAGGTTCAGAATGAGCTCGTGTATTCTATGT
GCCCCGGGCCATTCACGACTGCTAATAATACTCGTACATCGAATGGACAG
GGGTGCAATATTGTTACTAGAGTAGCCCCGGTAAGTTATATTGGGGAGCA
CGCCGCTGTCTTCGGTTGCTGCAGTTATTACTCTTACGTGTGTTTTCGCA
CTTCACCTCCTGCGAGAATATGATGATCGCTCGTCGTTACGACCTACTTG
GAAATCCCATGTCGATGGCAATTATGTCCGATACACTCCTGCCACCCTTT
TCCGTCCTTGCATGTTATTTACCGAACATAGGCCGCCAAGATGTGGCGGG
CGCTGCTGCTCGTGTCCCTTCTCCACCTCGACGCCATCAGCAACGACTGT
AGCACCCCATCCACAGTCTCGGAGCCACTCTCTGGGTCAGTGTCTGGAAC
TACTTCCGCATCTTTCACAGGATCGGGGACGAAAACTGCCTTCTCCAGGC
ACAGAGTGGAAACTCAACGCGGTTTGCAGCACAAGCAGGAGTTGGACGGA
CCTCCACATGCAACGGCGACGGGCACGGTGAGGGCCGAGGCGTCAACGAG
GGGAGGAAGAGGTGGTGGGGGAGCGGGAGTTGGCTATGTGTCCTTAGGCG
TGGCCGCACAGGCGTGCGGATCTTTACTGCGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5799:5277..7210+

>mRNA_H-paniculata_contig5799.13392.1 ID=mRNA_H-paniculata_contig5799.13392.1|Name=mRNA_H-paniculata_contig5799.13392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at H-paniculata_contig5799:5277..7210+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGCGCTACAGCCAACAAGACAGGGCAACGAGGACAGCGCTACAGCCA
ACAAGACAGGGCAACGAGCCCGAAGGAATATAATGCCTCGATATGGAATC
GTCGACACCGGGGACACTTCAGGCCACCCGCGCGATAGAGAACGAGCCAC
TGAGCCGACCTACAGGAGATCACTTCCGGGTGGACGAGACGGTGCACGAG
GCGACGGGAAGGAGTCACCTCAGCCCCCGAGTTTTGTGGTCTATACGGAA
GGAGTGCTGCGATGGCTTGGGGTGGAGGGGGTGACACCGGAGGTACTTCG
CCGAGCCAAGCGCGGGCTTCAAGAGAAGGAAGTGCCCGAAGGAATATAAT
GCCTCGATATGGAATCGTCGACACCGGGGACACTTCAGGCCACCCGCGCG
ATAGAGAACGAGCCACTGAGCCGACCTACAGGAGATCACTTCCGGGTGGA
CGAGACGGTGCACGAGGCGACGGGAAGGAGTCACCTCAGCCCCCGAGTTT
TGTGGTCTATACGGAAGGAGTGCTGCGATGGCTTGGGGTGGAGGGGGTGA
CACCGGAGGTACTTCGCCGAGCCAAGCGCGGGCTTCAAGAGAAGGAAGTG
GCCGCCAAGATGTGGCGGGCGCTGCTGCTCGTGTCCCTTCTCCACCTCGA
CGCCATCAGCAACGACTGTAGCACCCCATCCACAGTCTCGGAGCCACTCT
CTGGGTCAGTGTCTGGAACTACTTCCGCATCTTTCACAGGATCGGGGACG
AAAACTGCCTTCTCCAGGCACAGAGTGGAAACTCAACGCGGTTTGCAGCA
CAAGCAGGAGTTGGACGGACCTCCACATGCAACGGCGACGGGCACGGTGA
GGGCCGAGGCGTCAACGAGGGGAGGAAGAGGTGGTGGGGGAGCGGGAGTT
GGCTATGTGTCCTTAGGCGTGGCCGCACAGGCGTGCGGATCTTTACTGCG
AGCCGCCAAGATGTGGCGGGCGCTGCTGCTCGTGTCCCTTCTCCACCTCG
ACGCCATCAGCAACGACTGTAGCACCCCATCCACAGTCTCGGAGCCACTC
TCTGGGTCAGTGTCTGGAACTACTTCCGCATCTTTCACAGGATCGGGGAC
GAAAACTGCCTTCTCCAGGCACAGAGTGGAAACTCAACGCGGTTTGCAGC
ACAAGCAGGAGTTGGACGGACCTCCACATGCAACGGCGACGGGCACGGTG
AGGGCCGAGGCGTCAACGAGGGGAGGAAGAGGTGGTGGGGGAGCGGGAGT
TGGCTATGTGTCCTTAGGCGTGGCCGCACAGGCGTGCGGATCTTTACTGC
GA
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