mRNA_H-paniculata_contig57894.13381.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57894.13381.1
Unique NamemRNA_H-paniculata_contig57894.13381.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig57894.13381.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 103 bits (257), Expect = 2.440e-23
Identity = 52/104 (50.00%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    1 SRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGAHCRTKDTGVRWHGIREWIWEGILSLKYVQTGDQLADILTKGL 312
            S+KQ   A SST+AEY+AA  A KE  +LR  LG IG  C+ +T L  DN+SA+ +++    H RTK   VR+H +RE +  G ++L+YV TGDQ+AD+LTKGL
Sbjct: 1017 SKKQNTTALSSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGL 1120          
BLAST of mRNA_H-paniculata_contig57894.13381.1 vs. uniprot
Match: A0A5N5G5U8_9ROSA (Uncharacterized protein n=4 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5G5U8_9ROSA)

HSP 1 Score: 94.7 bits (234), Expect = 1.750e-22
Identity = 48/116 (41.38%), Postives = 78/116 (67.24%), Query Frame = 1
Query:    1 SRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGAHCRTKDTGVRWHGIREWIWEGILSLKYVQTGDQLADILTKGLSGVQFQELRNLL 348
            S+KQQ+V  S+T+AE+VAA     + ++LR +LG +G+  + ST ++ DN SAI LS+    H R+K   VR+H +R+   EG++ L Y ++ DQ+AD++TK L    F++LR++L
Sbjct:   10 SKKQQIVTLSTTEAEFVAAASCSCQAIWLRRMLGVLGYQQQDSTLIYCDNVSAIKLSRNPVMHGRSKHIDVRYHFLRDLCKEGVIELHYCKSEDQVADLMTKPLKQPAFEKLRSML 125          
BLAST of mRNA_H-paniculata_contig57894.13381.1 vs. uniprot
Match: A0A7R8ULQ3_HERIL (Hypothetical protein n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8ULQ3_HERIL)

HSP 1 Score: 93.6 bits (231), Expect = 1.970e-21
Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 1
Query:    1 SRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGAHCRTKDTGVRWHGIREWIWEGILSLKYVQTGDQLADILTKGLSGVQFQELRN 342
            S++Q+LV  S+T+AEYVAA  A KE ++LR+LL  +G     ST L  +N+SAI L K +  H RTK   ++ H +RE +  G +S++YV T  QLADI TK L   QFQ L N
Sbjct:   45 SQRQKLVTLSTTEAEYVAAAAAAKEAIWLRKLLNDLGCLPTTSTVLRVNNQSAIRLIKNAEFHKRTKHIDIKHHYVRETVESGEISVEYVPTYQQLADIFTKTLPKTQFQHLCN 158          
BLAST of mRNA_H-paniculata_contig57894.13381.1 vs. uniprot
Match: A0A0L6WRD6_9AGAR (Copia protein n=1 Tax=Termitomyces sp. J132 TaxID=1306850 RepID=A0A0L6WRD6_9AGAR)

HSP 1 Score: 94.0 bits (232), Expect = 3.340e-21
Identity = 50/116 (43.10%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    1 SRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGAHCRTKDTGVRWHGIREWIWEGILSLKYVQTGDQLADILTKGLSGVQFQELRNLL 348
            ++KQ+ VA SS +AEY+AA EA +E ++LR LLG+IG   + +TT+  DN S INLS+    H R K   +++H +RE +    ++++Y+ T D +ADI TK L+  QF  LR++L
Sbjct:  114 TQKQKTVAASSCEAEYMAAYEAAQECIWLRSLLGAIGHKPQEATTMLCDNNSVINLSEDPMLHQRVKHVDIKYHFLRERVASREITVRYINTKDNVADIFTKALAAPQFVRLRDIL 229          
BLAST of mRNA_H-paniculata_contig57894.13381.1 vs. uniprot
Match: A0A7H4LDI7_WHEAT (Genome assembly, chromosome: II n=2 Tax=Triticinae TaxID=1648030 RepID=A0A7H4LDI7_WHEAT)

HSP 1 Score: 97.1 bits (240), Expect = 4.830e-21
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    1 SRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGAHCRTKDTGVRWHGIREWIWEGILSLKYVQTGDQLADILTKGLSGVQFQELR 339
            S+KQ++VA SS +AEYVAA  A  + ++L  L+  +     G+TT+F DNKSAI L K    H R+K   VR+H IR+ + EG + +K++ TGDQLADI TK L   +FQ+LR
Sbjct: 1175 SQKQKIVALSSCEAEYVAATTAACQAIWLSRLMRDLLKEEAGATTIFIDNKSAIQLCKNPVCHDRSKHIDVRFHFIRKCVEEGKIRVKHIATGDQLADIFTKSLGRTRFQQLR 1287          
BLAST of mRNA_H-paniculata_contig57894.13381.1 vs. uniprot
Match: A0A6G0WQK1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WQK1_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 5.070e-21
Identity = 50/116 (43.10%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    1 SRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGAHCRTKDTGVRWHGIREWIWEGILSLKYVQTGDQLADILTKGLSGVQFQELRNLL 348
            SRKQ LV  S+T+ E++AA EA K  V+LRELL  + F     T L  DN+S I +   S +H RTK   +R+H I++ + EG++ L+Y+ T +Q+ADILT+G+    F++L+++L
Sbjct:  377 SRKQSLVGHSTTEVEFIAAAEAAKSIVWLRELLEEMSFVVNSPTYLHVDNQSTIQVVHRSSSHDRTKHIRLRFHFIKDLVEEGMIKLRYINTKEQVADILTRGIVLAHFEKLQSML 492          
BLAST of mRNA_H-paniculata_contig57894.13381.1 vs. uniprot
Match: A0A6H5II26_9HYME (Integrase catalytic domain-containing protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5II26_9HYME)

HSP 1 Score: 96.7 bits (239), Expect = 6.540e-21
Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    1 SRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGAHCRTKDTGVRWHGIREWIWEGILSLKYVQTGDQLADILTKGLSGVQFQELRNLL 348
            SR+Q  V+ S+T+AEY+AA EA KE V+LR+LL  I   C   T L+ DN+SAI L++    H R+K   VR+  I E + E ++  ++V++GDQ ADI TKGL   +F  LR+ L
Sbjct:  972 SRRQACVSLSTTEAEYIAASEATKEIVWLRKLLADIDCECLTPTILYIDNQSAIRLTRNPVFHRRSKHIDVRYQFINEKMKENVIDTRFVKSGDQYADIFTKGLPSEKFNNLRDKL 1087          
BLAST of mRNA_H-paniculata_contig57894.13381.1 vs. uniprot
Match: A0A6G0X9X4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X9X4_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 7.720e-21
Identity = 49/116 (42.24%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    1 SRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGAHCRTKDTGVRWHGIREWIWEGILSLKYVQTGDQLADILTKGLSGVQFQELRNLL 348
            S+KQ +V  S+T+ E++AA EA K  V+L ELL  + +  + S  L  DN+SAI +++ S AH RTK   +R+H I++ + EG++  +Y+ T +Q+ADILTK +   QF+ LR +L
Sbjct:  150 SKKQSMVGHSTTEVEFIAAAEAAKSIVWLIELLHELKYDIKQSIPLHVDNQSAIQVARRSSAHDRTKHIRLRFHFIKDLVDEGMIEQRYINTKEQVADILTKSIVLAQFERLRFML 265          
BLAST of mRNA_H-paniculata_contig57894.13381.1 vs. uniprot
Match: A0A4Z0A7X3_9AGAM (Uncharacterized protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Z0A7X3_9AGAM)

HSP 1 Score: 92.8 bits (229), Expect = 8.080e-21
Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    1 SRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGAHCRTKDTGVRWHGIREWIWEGILSLKYVQTGDQLADILTKGL 312
            S+KQ + A SST+AEY+AA  A KE  +L   L  IG  C+ +T L  DN+SA+ ++     H +TK   VR+H +RE +  G ++L+YV  GDQ+AD+LTKGL
Sbjct:  113 SKKQNMTALSSTEAEYIAAAHAAKEATWLCTFLSEIGRPCKAATLLLMDNQSAMAIAWNPVFHVQTKHIDVRYHFLREKVEAGAINLQYVPMGDQVADVLTKGL 216          
BLAST of mRNA_H-paniculata_contig57894.13381.1 vs. uniprot
Match: A0A6A3FC77_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FC77_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.010e-20
Identity = 52/114 (45.61%), Postives = 74/114 (64.91%), Query Frame = 1
Query:   10 QQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGAHCRTKDTGVRWHGIREWIWEGILSLKYVQTGDQLADILTKGLSGVQFQELRNLLI 351
            Q+ VA SST+AEY+A  +  KE V++R LL  IG    G+T ++EDN+ A+ L+K  G   RTK   +R+H IRE +    + L+YV T +QLAD++TKGLS    + LR L+I
Sbjct:   45 QKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMVLAKNVGYQARTKHIDIRYHFIREKVVSNEVELEYVDTKNQLADVMTKGLSS---KTLRYLMI 155          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57894.13381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y9ZY34_9AGAM2.440e-2350.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N5G5U8_9ROSA1.750e-2241.38Uncharacterized protein n=4 Tax=Pyrus ussuriensis ... [more]
A0A7R8ULQ3_HERIL1.970e-2147.37Hypothetical protein n=1 Tax=Hermetia illucens Tax... [more]
A0A0L6WRD6_9AGAR3.340e-2143.10Copia protein n=1 Tax=Termitomyces sp. J132 TaxID=... [more]
A0A7H4LDI7_WHEAT4.830e-2147.79Genome assembly, chromosome: II n=2 Tax=Triticinae... [more]
A0A6G0WQK1_9STRA5.070e-2143.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5II26_9HYME6.540e-2145.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0X9X4_9STRA7.720e-2142.24Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A4Z0A7X3_9AGAM8.080e-2146.15Uncharacterized protein n=1 Tax=Hericium alpestre ... [more]
A0A6A3FC77_9STRA1.010e-2045.61Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57894contigH-paniculata_contig57894:3..356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score99.0
Seed ortholog evalue1.6e-18
Seed eggNOG ortholog4513.MLOC_79484.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930627.7522058-CDS-H-paniculata_contig57894:2..3561622930627.7522058-CDS-H-paniculata_contig57894:2..356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57894 3..356 +
1691481379.2461746-CDS-H-paniculata_contig57894:2..3561691481379.2461746-CDS-H-paniculata_contig57894:2..356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57894 3..356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57894.13381.1prot_H-paniculata_contig57894.13381.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57894 3..356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57894.13381.1

>prot_H-paniculata_contig57894.13381.1 ID=prot_H-paniculata_contig57894.13381.1|Name=mRNA_H-paniculata_contig57894.13381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
SRKQQLVAWSSTKAEYVAAGEARKETVYLRELLGSIGFGCRGSTTLFEDN
KSAINLSKGSGAHCRTKDTGVRWHGIREWIWEGILSLKYVQTGDQLADIL
TKGLSGVQFQELRNLLI*
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mRNA from alignment at H-paniculata_contig57894:3..356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57894.13381.1 ID=mRNA_H-paniculata_contig57894.13381.1|Name=mRNA_H-paniculata_contig57894.13381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at H-paniculata_contig57894:3..356+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTAGGAAGCAACAGTTAGTCGCGTGGTCCAGTACAAAGGCAGAGTACGT TGCTGCAGGAGAAGCGCGAAAGGAGACGGTATATCTTAGGGAGTTACTAG GATCGATAGGTTTCGGATGCAGGGGAAGCACGACATTGTTTGAGGACAAT AAATCAGCTATTAATCTCAGTAAGGGATCTGGCGCACACTGCAGGACAAA GGACACCGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTTGGGAAGGAA TATTATCATTGAAATACGTGCAGACCGGCGATCAACTTGCTGACATTTTA ACGAAAGGACTAAGCGGAGTACAGTTTCAGGAACTTAGAAATTTACTCAT TTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig57894:3..356+

>mRNA_H-paniculata_contig57894.13381.1 ID=mRNA_H-paniculata_contig57894.13381.1|Name=mRNA_H-paniculata_contig57894.13381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig57894:3..356+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTAGGAAGCAACAGTTAGTCGCGTGGTCCAGTACAAAGGCAGAGTACGT
TGCTGCAGGAGAAGCGCGAAAGGAGACGGTATATCTTAGGGAGTTACTAG
GATCGATAGGTTTCGGATGCAGGGGAAGCACGACATTGTTTGAGGACAAT
AAATCAGCTATTAATCTCAGTAAGGGATCTGGCGCACACTGCAGGACAAA
GGACACCGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTTGGGAAGGAA
TATTATCATTGAAATACGTGCAGACCGGCGATCAACTTGCTGACATTTTA
ACGAAAGGACTAAGCGGAGTACAGTTTCAGGAACTTAGAAATTTACTCAT
TTGATCTAGGAAGCAACAGTTAGTCGCGTGGTCCAGTACAAAGGCAGAGT
ACGTTGCTGCAGGAGAAGCGCGAAAGGAGACGGTATATCTTAGGGAGTTA
CTAGGATCGATAGGTTTCGGATGCAGGGGAAGCACGACATTGTTTGAGGA
CAATAAATCAGCTATTAATCTCAGTAAGGGATCTGGCGCACACTGCAGGA
CAAAGGACACCGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTTGGGAA
GGAATATTATCATTGAAATACGTGCAGACCGGCGATCAACTTGCTGACAT
TTTAACGAAAGGACTAAGCGGAGTACAGTTTCAGGAACTTAGAAATTTAC
TCATTTGA
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