mRNA_H-paniculata_contig57853.13373.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57853.13373.1
Unique NamemRNA_H-paniculata_contig57853.13373.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig57853.13373.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.530e-14
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = -2 
Query:  160 DALNRSATTANPEKKSPDEMFYGEIPTIKLLPFFKPGYCKYKRTSKSMPKAQECFYLGPAYN------------------RNVTWRRSIPVTSQQAIPSSM 408
            +ALN +A +ANP+ KSP EM+YGE    +  PF KP YCK++R SK +PK + CFY+GP+ +                  RNVTW         +A+PS +
Sbjct:    6 EALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRNVTW---------EALPSQL 97
[Close]
BLAST of mRNA_H-paniculata_contig57853.13373.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.650e-14
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = -2 
Query:  160 DALNRSATTANPEKKSPDEMFYGEIPTIKLLPFFKPGYCKYKRTSKSMPKAQECFYLGPAYN------------------RNVTWRRSIPVTSQQAIPSSM 408
            +ALN +A +ANP+ KSP EM+YGE    +  PF KP YCK++R SK +PK + CFY+GP+ +                  RNVTW         +A+PS +
Sbjct:  273 EALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRNVTW---------EALPSQL 364
[Close]
BLAST of mRNA_H-paniculata_contig57853.13373.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.650e-14
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = -2 
Query:  160 DALNRSATTANPEKKSPDEMFYGEIPTIKLLPFFKPGYCKYKRTSKSMPKAQECFYLGPAYN------------------RNVTWRRSIPVTSQQAIPSSM 408
            +ALN +A +ANP+ KSP EM+YGE    +  PF KP YCK++R SK +PK + CFY+GP+ +                  RNVTW         +A+PS +
Sbjct:  369 EALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRNVTW---------EALPSQL 460
[Close]
BLAST of mRNA_H-paniculata_contig57853.13373.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.720e-14
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = -2 
Query:  160 DALNRSATTANPEKKSPDEMFYGEIPTIKLLPFFKPGYCKYKRTSKSMPKAQECFYLGPAYN------------------RNVTWRRSIPVTSQQAIPSSM 408
            +ALN +A +ANP+ KSP EM+YGE    +  PF KP YCK++R SK +PK + CFY+GP+ +                  RNVTW         +A+PS +
Sbjct:  623 EALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRNVTW---------EALPSQL 714
[Close]
BLAST of mRNA_H-paniculata_contig57853.13373.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.740e-14
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = -2 
Query:  160 DALNRSATTANPEKKSPDEMFYGEIPTIKLLPFFKPGYCKYKRTSKSMPKAQECFYLGPAYN------------------RNVTWRRSIPVTSQQAIPSSM 408
            +ALN +A +ANP+ KSP EM+YGE    +  PF KP YCK++R SK +PK + CFY+GP+ +                  RNVTW         +A+PS +
Sbjct:  599 EALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRNVTW---------EALPSQL 690
[Close]
BLAST of mRNA_H-paniculata_contig57853.13373.1 vs. uniprot
Match: A0A6H5JVW7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW7_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 5.060e-14
Identity = 47/102 (46.08%), Postives = 58/102 (56.86%), Query Frame = -2 
Query:  160 DALNRSATTANPEKKSPDEMFYGEIPTI-KLLPFFKPGYCKYKRTSKSMPKAQECFYLGPAYN------------------RNVTWRRSIPVTSQQAIPSSM 408
            DALN ++TT+NPEKKSP EM++G  P      PF KP   K KRT KS PKAQ+CFYLGP  N                  RN TW+ S+P  +  A+P S+
Sbjct:   93 DALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQ-SVPA-APAALPQSL 192
[Close]
BLAST of mRNA_H-paniculata_contig57853.13373.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.780e-13
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = -2 
Query:  229 DALNRSATTANPEKKSPDEMFYGEIPTIKLLPFFKPGYCKYKRTSKSMPKAQECFYLGPA 408
            +ALN +A +ANP+ KSP EM+YGE    +  PF KP YCK++R SK  PK + CFY+GP+
Sbjct:  476 EALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLFPKGESCFYVGPS 535
[Close]
BLAST of mRNA_H-paniculata_contig57853.13373.1 vs. uniprot
Match: A0A6H5JLU0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU0_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.870e-13
Identity = 38/64 (59.38%), Postives = 44/64 (68.75%), Query Frame = -2 
Query:  217 ALNRSATTANPEKKSPDEMFYGEIPTI-KLLPFFKPGYCKYKRTSKSMPKAQECFYLGPAYNRN 405
            ALN ++TT+NPEKKSP EM++G  P      PF KP   K KRT KS PKAQ+CFYLGP  N N
Sbjct:   83 ALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTN 146
[Close]
BLAST of mRNA_H-paniculata_contig57853.13373.1 vs. uniprot
Match: A0A6H5KDR1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR1_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.040e-13
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = -2 
Query:  229 DALNRSATTANPEKKSPDEMFYGEIPTIKLLPFFKPGYCKYKRTSKSMPKAQECFYLGPA 408
            +ALN +A +ANP+ KSP EM+YGE    +  PF KP YC+++R SK +PK + CFY+GP+
Sbjct:   32 EALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCRWQRPSKLLPKGESCFYVGPS 91
[Close]
BLAST of mRNA_H-paniculata_contig57853.13373.1 vs. uniprot
Match: A0A6H5L3E0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E0_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.330e-13
Identity = 46/101 (45.54%), Postives = 57/101 (56.44%), Query Frame = -2 
Query:  160 ALNRSATTANPEKKSPDEMFYGEIPTI-KLLPFFKPGYCKYKRTSKSMPKAQECFYLGPAYN------------------RNVTWRRSIPVTSQQAIPSSM 405
            ALN ++TT+NPEKKSP EM++G  P      PF KP   K KRT KS PKAQ+CFYLGP  N                  RN TW+ S+P  +  A+P S+
Sbjct:  716 ALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQ-SVPA-APAALPQSL 814
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57853.13373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV80_9PHAE3.530e-1439.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J594_9PHAE3.650e-1439.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE3.650e-1439.60CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K622_9PHAE3.720e-1439.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE3.740e-1439.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVW7_9PHAE5.060e-1446.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JB16_9PHAE1.780e-1353.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JLU0_9PHAE1.870e-1359.38Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KDR1_9PHAE2.040e-1351.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3E0_9PHAE2.330e-1345.54Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57853contigH-paniculata_contig57853:561..1023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size409
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57853.13373.1prot_H-paniculata_contig57853.13373.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57853 701..964 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930627.1678-UTR-H-paniculata_contig57853:560..7001622930627.1678-UTR-H-paniculata_contig57853:560..700Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig57853 561..700 -
1691481378.9934807-UTR-H-paniculata_contig57853:560..7001691481378.9934807-UTR-H-paniculata_contig57853:560..700Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig57853 561..700 -
1622930627.2115796-UTR-H-paniculata_contig57853:964..10231622930627.2115796-UTR-H-paniculata_contig57853:964..1023Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig57853 965..1023 -
1691481379.0221248-UTR-H-paniculata_contig57853:964..10231691481379.0221248-UTR-H-paniculata_contig57853:964..1023Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig57853 965..1023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930627.187542-CDS-H-paniculata_contig57853:700..7461622930627.187542-CDS-H-paniculata_contig57853:700..746Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57853 701..746 -
1691481379.0036778-CDS-H-paniculata_contig57853:700..7461691481379.0036778-CDS-H-paniculata_contig57853:700..746Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57853 701..746 -
1622930627.1991024-CDS-H-paniculata_contig57853:800..9641622930627.1991024-CDS-H-paniculata_contig57853:800..964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57853 801..964 -
1691481379.0128305-CDS-H-paniculata_contig57853:800..9641691481379.0128305-CDS-H-paniculata_contig57853:800..964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57853 801..964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57853.13373.1

>prot_H-paniculata_contig57853.13373.1 ID=prot_H-paniculata_contig57853.13373.1|Name=mRNA_H-paniculata_contig57853.13373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MEDSSLPSASDLPDSAWSMSSSPLSRSCKVSPPPSKKESLAAKLRGLNGA
RLHCDCKRAPSRNIPVLWA*
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mRNA from alignment at H-paniculata_contig57853:561..1023-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57853.13373.1 ID=mRNA_H-paniculata_contig57853.13373.1|Name=mRNA_H-paniculata_contig57853.13373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=463bp|location=Sequence derived from alignment at H-paniculata_contig57853:561..1023- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGCTCAGGCCCCGCCCGAGTTCCCTCCTCACGTGCACCCATCACGGGA
AACTCCCGGATGGAAGATTCCTCACTTCCATCAGCATCCGATCTCCCAGA
CTCGGCCTGGTCGATGTCATCCTCCCCGCTCTCGAGATCTTGCAAAGTTT
CCCCCCCCCCATCGAAGAAGGAATCGCTTGCTGCGAAGTTACGGGGATTG
AACGGCGCCAGGTTACATTGCGAGTTGTAATCACGTATCTCCCCTTAGTC
TGCATCCGCATTGCATCACGAGGATAGTTGTAAGCGGGCCCCAAGTAGAA
ACATTCCTGTGCTTTGGGCATAGATTTCGACGTCCTCTTATACTTACAGT
ATCCTGGCTTAAAAAAAGGGAGTAACTTGATCGTTGGAATTTCACCATAA
AACATCTCATCCGGGGATTTCTTTTCTGGGTTTGCGGTAGTGGCGGAGCG
ATTTAAAGCATCA
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Coding sequence (CDS) from alignment at H-paniculata_contig57853:561..1023-

>mRNA_H-paniculata_contig57853.13373.1 ID=mRNA_H-paniculata_contig57853.13373.1|Name=mRNA_H-paniculata_contig57853.13373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig57853:561..1023- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGATTCCTCACTTCCATCAGCATCCGATCTCCCAGACTCGGCCTG
GTCGATGTCATCCTCCCCGCTCTCGAGATCTTGCAAAGTTTCCCCCCCCC
CATCGAAGAAGGAATCGCTTGCTGCGAAGTTACGGGGATTGAACGGCGCC
AGGTTACATTGCGAATGGAAGATTCCTCACTTCCATCAGCATCCGATCTC
CCAGACTCGGCCTGGTCGATGTCATCCTCCCCGCTCTCGAGATCTTGCAA
AGTTTCCCCCCCCCCATCGAAGAAGGAATCGCTTGCTGCGAAGTTACGGG
GATTGAACGGCGCCAGGTTACATTGCGATTGTAAGCGGGCCCCAAGTAGA
AACATTCCTGTGCTTTGGGCATAGTTGTAAGCGGGCCCCAAGTAGAAACA
TTCCTGTGCTTTGGGCATAG
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