mRNA_H-paniculata_contig57745.13362.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57745.13362.1
Unique NamemRNA_H-paniculata_contig57745.13362.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig57745.13362.1 vs. uniprot
Match: A0A6I5NDM4_9CYAN (Photosystem I iron-sulfur center n=2 Tax=unclassified Leptolyngbya TaxID=2650499 RepID=A0A6I5NDM4_9CYAN)

HSP 1 Score: 131 bits (330), Expect = 4.170e-38
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 243
            MSHSV IYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIA++PRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY
Sbjct:   29 MSHSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIAASPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 109
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BLAST of mRNA_H-paniculata_contig57745.13362.1 vs. uniprot
Match: K9XT12_STAC7 (Photosystem I iron-sulfur center n=41 Tax=root TaxID=1 RepID=K9XT12_STAC7)

HSP 1 Score: 129 bits (325), Expect = 1.050e-37
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 243
            MSHSV IYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIAS+PRTEDXXXXXXXXXXXXXXXLSIRVYLG ETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDXXXXXXXXXXXXXXXLSIRVYLGPETTRSMGLAY 81
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BLAST of mRNA_H-paniculata_contig57745.13362.1 vs. uniprot
Match: A0A088CIH6_9CHLO (Photosystem I iron-sulfur center n=2 Tax=Chlorophyta TaxID=3041 RepID=A0A088CIH6_9CHLO)

HSP 1 Score: 128 bits (321), Expect = 4.960e-37
Identity = 76/81 (93.83%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 243
            MSH+V IYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXX S+RVYLG ETTRSMGLAY
Sbjct:    6 MSHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXXSVRVYLGAETTRSMGLAY 86
[Close]
BLAST of mRNA_H-paniculata_contig57745.13362.1 vs. uniprot
Match: A0A097KM99_9CHLO (Photosystem I iron-sulfur center n=6 Tax=Chlorophyta TaxID=3041 RepID=A0A097KM99_9CHLO)

HSP 1 Score: 127 bits (318), Expect = 2.350e-36
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 243
            MSHSV IYDTCIGCTQCVRACPTDVLEMVPWDGCKA QIASAPRTEDXXXXXXXXXXXXXXX S+RVYLG ETTRSMGLAY
Sbjct:   23 MSHSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKANQIASAPRTEDXXXXXXXXXXXXXXXXSVRVYLGSETTRSMGLAY 103
[Close]
BLAST of mRNA_H-paniculata_contig57745.13362.1 vs. uniprot
Match: PSAC_SYNP2 (Photosystem I iron-sulfur center n=424 Tax=root TaxID=1 RepID=PSAC_SYNP2)

HSP 1 Score: 126 bits (316), Expect = 2.480e-36
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 243
            MSHSV IYDTCIGCTQCVRACP DVLEMVPWDGCKAGQIAS+PRTEDXXXXXXXXXXXXXXX SIRVYLG ETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDXXXXXXXXXXXXXXXXSIRVYLGAETTRSMGLAY 81
[Close]
BLAST of mRNA_H-paniculata_contig57745.13362.1 vs. uniprot
Match: PSAC_THEVB (Photosystem I iron-sulfur center n=199 Tax=cellular organisms TaxID=131567 RepID=PSAC_THEVB)

HSP 1 Score: 126 bits (316), Expect = 2.480e-36
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 243
            M+H+V IYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIAS+PRTEDXXXXXXXXXXXXXXX SIRVYLG ETTRSMGLAY
Sbjct:    1 MAHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDXXXXXXXXXXXXXXXXSIRVYLGAETTRSMGLAY 81
[Close]
BLAST of mRNA_H-paniculata_contig57745.13362.1 vs. uniprot
Match: PSAC_GUITH (Photosystem I iron-sulfur center n=17 Tax=Eukaryota TaxID=2759 RepID=PSAC_GUITH)

HSP 1 Score: 125 bits (315), Expect = 3.530e-36
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 243
            MSHSV +YDTCIGCTQCVRACP DVLEMV WDGCKAGQIASAPRTEDXXXXXXXXXXXXXXX S+RVYLGGETTRSMGLAY
Sbjct:    1 MSHSVKVYDTCIGCTQCVRACPCDVLEMVAWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXXSVRVYLGGETTRSMGLAY 81
[Close]
BLAST of mRNA_H-paniculata_contig57745.13362.1 vs. uniprot
Match: M1KFN6_DIALT (Photosystem I iron-sulfur center n=4 Tax=Eukaryota TaxID=2759 RepID=M1KFN6_DIALT)

HSP 1 Score: 125 bits (314), Expect = 5.010e-36
Identity = 74/81 (91.36%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 243
            MSH+V +YDTCIGCTQCVRACP DVLEMV WDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLS+RVYLGGETTRS+GLAY
Sbjct:    1 MSHNVKVYDTCIGCTQCVRACPCDVLEMVKWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSVRVYLGGETTRSLGLAY 81
[Close]
BLAST of mRNA_H-paniculata_contig57745.13362.1 vs. uniprot
Match: M1X443_9NOST (Photosystem I iron-sulfur center n=9 Tax=cellular organisms TaxID=131567 RepID=M1X443_9NOST)

HSP 1 Score: 125 bits (314), Expect = 5.010e-36
Identity = 74/81 (91.36%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 243
            MSH+V IYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQ+A++PRTEDXXXXXXXXXXXXXXX SIRVYLG ETTRSMGLAY
Sbjct:    1 MSHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQLAASPRTEDXXXXXXXXXXXXXXXXSIRVYLGAETTRSMGLAY 81
[Close]
BLAST of mRNA_H-paniculata_contig57745.13362.1 vs. uniprot
Match: A0A6B3LYA2_9CYAN (Photosystem I iron-sulfur center n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A6B3LYA2_9CYAN)

HSP 1 Score: 125 bits (313), Expect = 7.120e-36
Identity = 74/81 (91.36%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:    1 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 243
            MSH V IYDTCIGCTQCVRACP DVLEMVPWDGCKA QIAS+PRT+DXXXXXXXXXXXXXXXLS+RVYLGGETTRSMGLAY
Sbjct:    1 MSHKVKIYDTCIGCTQCVRACPLDVLEMVPWDGCKAAQIASSPRTQDXXXXXXXXXXXXXXXLSVRVYLGGETTRSMGLAY 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57745.13362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I5NDM4_9CYAN4.170e-3896.30Photosystem I iron-sulfur center n=2 Tax=unclassif... [more]
K9XT12_STAC71.050e-3796.30Photosystem I iron-sulfur center n=41 Tax=root Tax... [more]
A0A088CIH6_9CHLO4.960e-3793.83Photosystem I iron-sulfur center n=2 Tax=Chlorophy... [more]
A0A097KM99_9CHLO2.350e-3693.83Photosystem I iron-sulfur center n=6 Tax=Chlorophy... [more]
PSAC_SYNP22.480e-3693.83Photosystem I iron-sulfur center n=424 Tax=root Ta... [more]
PSAC_THEVB2.480e-3692.59Photosystem I iron-sulfur center n=199 Tax=cellula... [more]
PSAC_GUITH3.530e-3692.59Photosystem I iron-sulfur center n=17 Tax=Eukaryot... [more]
M1KFN6_DIALT5.010e-3691.36Photosystem I iron-sulfur center n=4 Tax=Eukaryota... [more]
M1X443_9NOST5.010e-3691.36Photosystem I iron-sulfur center n=9 Tax=cellular ... [more]
A0A6B3LYA2_9CYAN7.120e-3691.36Photosystem I iron-sulfur center n=2 Tax=Oscillato... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57745contigH-paniculata_contig57745:517..762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue2e-28
Seed eggNOG ortholog2880.D1J7C7
Preferred namepsaC
KEGG koko:K02691
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00163
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009507,GO:0009521,GO:0009522,GO:0009532,GO:0009533,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009987,GO:0015979,GO:0016020,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0098796
EggNOG free text desc.photosynthetic electron transport in photosystem I
EggNOG OGs2S26M@2759,COG1145@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Exons1
Model size246
Cds size246
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930626.0085404-CDS-H-paniculata_contig57745:516..7621622930626.0085404-CDS-H-paniculata_contig57745:516..762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57745 517..762 +
1691481378.369118-CDS-H-paniculata_contig57745:516..7621691481378.369118-CDS-H-paniculata_contig57745:516..762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57745 517..762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57745.13362.1prot_H-paniculata_contig57745.13362.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57745 517..762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57745.13362.1

>prot_H-paniculata_contig57745.13362.1 ID=prot_H-paniculata_contig57745.13362.1|Name=mRNA_H-paniculata_contig57745.13362.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVG
CKRCETACPTDFLSIRVYLGGETTRSMGLAY*
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mRNA from alignment at H-paniculata_contig57745:517..762+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57745.13362.1 ID=mRNA_H-paniculata_contig57745.13362.1|Name=mRNA_H-paniculata_contig57745.13362.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=246bp|location=Sequence derived from alignment at H-paniculata_contig57745:517..762+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACATTCAGTAAACATTTATGATACTTGTATTGGTTGCACACAGTG
TGTAAGAGCTTGTCCTACCGATGTACTAGAAATGGTACCTTGGGATGGGT
GTAAAGCTGGACAAATCGCTTCAGCTCCTCGTACTGAGGATTGTGTAGGA
TGTAAGCGTTGTGAGACTGCTTGCCCAACAGACTTTTTAAGTATTCGTGT
TTATTTAGGTGGTGAAACAACACGTAGTATGGGGTTAGCATACTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig57745:517..762+

>mRNA_H-paniculata_contig57745.13362.1 ID=mRNA_H-paniculata_contig57745.13362.1|Name=mRNA_H-paniculata_contig57745.13362.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig57745:517..762+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACATTCAGTAAACATTTATGATACTTGTATTGGTTGCACACAGTG
TGTAAGAGCTTGTCCTACCGATGTACTAGAAATGGTACCTTGGGATGGGT
GTAAAGCTGGACAAATCGCTTCAGCTCCTCGTACTGAGGATTGTGTAGGA
TGTAAGCGTTGTGAGACTGCTTGCCCAACAGACTTTTTAAGTATTCGTGT
TTATTTAGGTGGTGAAACAACACGTAGTATGGGGTTAGCATACTAAATGT
CACATTCAGTAAACATTTATGATACTTGTATTGGTTGCACACAGTGTGTA
AGAGCTTGTCCTACCGATGTACTAGAAATGGTACCTTGGGATGGGTGTAA
AGCTGGACAAATCGCTTCAGCTCCTCGTACTGAGGATTGTGTAGGATGTA
AGCGTTGTGAGACTGCTTGCCCAACAGACTTTTTAAGTATTCGTGTTTAT
TTAGGTGGTGAAACAACACGTAGTATGGGGTTAGCATACTAA
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