mRNA_H-paniculata_contig5700.13249.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5700.13249.1
Unique NamemRNA_H-paniculata_contig5700.13249.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5700.13249.1 vs. uniprot
Match: A0A6H5JYI9_9PHAE (B30.2/SPRY domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI9_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.860e-20
Identity = 40/51 (78.43%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 YWECTVLSPETKEGHCRLGWSRRTGSLQAPVGYDKSSFAYRDIAGSKVRTS 153
            YWECTVL PET EGHCRLGWS   G LQ PVGYDK S+AYRDIAGSKV  S
Sbjct:  132 YWECTVLPPETTEGHCRLGWSLPAGKLQGPVGYDKFSYAYRDIAGSKVHDS 182
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BLAST of mRNA_H-paniculata_contig5700.13249.1 vs. uniprot
Match: D8LMA4_ECTSI (B30.2/SPRY domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA4_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 6.030e-20
Identity = 39/51 (76.47%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 YWECTVLSPETKEGHCRLGWSRRTGSLQAPVGYDKSSFAYRDIAGSKVRTS 153
            YWEC VL PET EGHCRLGWS   G LQ PVGYDK S+AYRDIAGSKV  S
Sbjct:  130 YWECAVLPPETTEGHCRLGWSLPAGKLQGPVGYDKFSYAYRDIAGSKVHDS 180
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BLAST of mRNA_H-paniculata_contig5700.13249.1 vs. uniprot
Match: A0A835YSC8_9STRA (Concanavalin A-like lectin/glucanase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSC8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.020e-13
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 YWECTVLSPETKEGHCRLGWSRRTGSLQAPVGYDKSSFAYRDIAGSKVRTS 153
            Y+E  VL P   +GH R+GWS   G LQAPVGYD+ S+AYRD+AGS+V  S
Sbjct:   43 YFEVLVLPPARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHAS 93
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BLAST of mRNA_H-paniculata_contig5700.13249.1 vs. uniprot
Match: A0A482ULD5_9ARCH (B30.2/SPRY domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482ULD5_9ARCH)

HSP 1 Score: 69.7 bits (169), Expect = 1.480e-13
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 YWECTVLSPETKEGHCRLGWSRRTGSLQAPVGYDKSSFAYRDIAGSKVRTSRAL 162
            YWE  VL     + H R+GWS R G LQAPVGYD+ S+AYRDIAGS V  S  +
Sbjct:   14 YWEAEVLPSLGDDAHVRIGWSTREGELQAPVGYDQHSYAYRDIAGSMVHKSTRI 67
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BLAST of mRNA_H-paniculata_contig5700.13249.1 vs. uniprot
Match: A0A7S2HUN3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HUN3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.590e-11
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 YWECTVLSPETKEG-HCRLGWSRRTGSLQAPVGYDKSSFAYRDIAGSKVRTS 153
            YWE  VL P   EG H R+GW+ +   LQAPVGYD+ S+A+RD+AGSK+  S
Sbjct:    1 YWESVVLPPAGPEGGHVRVGWAAKPAELQAPVGYDQWSYAFRDVAGSKLHKS 52
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BLAST of mRNA_H-paniculata_contig5700.13249.1 vs. uniprot
Match: A0A448YXR5_9STRA (SPRY domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YXR5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.040e-10
Identity = 29/48 (60.42%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   13 TVLSPETKEGHCRLGWSRRTGSLQAPVGYDKSSFAYRDIAGSKVRTSR 156
            T  S +    H RLGWS RTG LQAPVGYDK S+  RDI GSK+  SR
Sbjct:  395 TTXSKQAFGAHVRLGWSMRTGDLQAPVGYDKWSYGLRDIQGSKIHCSR 442
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BLAST of mRNA_H-paniculata_contig5700.13249.1 vs. uniprot
Match: I0YT44_COCSC (B30.2/SPRY domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YT44_COCSC)

HSP 1 Score: 62.8 bits (151), Expect = 3.480e-10
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   40 GHCRLGWSRRTGSLQAPVGYDKSSFAYRDIAGSKV 144
            GHCRLGWS + G LQAPVGYD+ S AYRD+ GSKV
Sbjct:  113 GHCRLGWSTKKGELQAPVGYDEHSMAYRDLEGSKV 147
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BLAST of mRNA_H-paniculata_contig5700.13249.1 vs. uniprot
Match: A0A8J9REB5_9CHLO (Set1/Ash2 histone methyltransferase complex subunit ASH2 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9REB5_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 3.520e-10
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   40 GHCRLGWSRRTGSLQAPVGYDKSSFAYRDIAGSKV 144
            GHCRLGWS + G LQAPVGYD+ S AYRD+ GSKV
Sbjct:  111 GHCRLGWSTKKGELQAPVGYDEHSLAYRDLEGSKV 145
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BLAST of mRNA_H-paniculata_contig5700.13249.1 vs. uniprot
Match: A0A835DK97_9MAGN (B30.2/SPRY domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835DK97_9MAGN)

HSP 1 Score: 62.4 bits (150), Expect = 5.420e-10
Identity = 33/49 (67.35%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 YWECTVLS-PETKEGHCRLGWSRRTGSLQAPVGYDKSSFAYRDIAGSKV 144
            Y+E  VL   ET  GH RLGWS   G LQAPVGYD +SFAYRDI GSKV
Sbjct:  178 YFEIRVLKLGET--GHSRLGWSTEKGDLQAPVGYDSNSFAYRDIDGSKV 224
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BLAST of mRNA_H-paniculata_contig5700.13249.1 vs. uniprot
Match: B8BV51_THAPS (B30.2/SPRY domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BV51_THAPS)

HSP 1 Score: 62.4 bits (150), Expect = 5.640e-10
Identity = 28/48 (58.33%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   13 TVLSPETKEGHCRLGWSRRTGSLQAPVGYDKSSFAYRDIAGSKVRTSR 156
            T    + + GH R+GWS R G LQAPVGYDK S+A RD  GSKV  SR
Sbjct:  214 TSTVTKQRNGHLRIGWSTRLGDLQAPVGYDKHSYAVRDTMGSKVHNSR 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5700.13249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYI9_9PHAE3.860e-2078.43B30.2/SPRY domain-containing protein n=1 Tax=Ectoc... [more]
D8LMA4_ECTSI6.030e-2076.47B30.2/SPRY domain-containing protein n=1 Tax=Ectoc... [more]
A0A835YSC8_9STRA1.020e-1358.82Concanavalin A-like lectin/glucanase domain-contai... [more]
A0A482ULD5_9ARCH1.480e-1357.41B30.2/SPRY domain-containing protein n=1 Tax=archa... [more]
A0A7S2HUN3_9STRA1.590e-1155.77Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A448YXR5_9STRA3.040e-1060.42SPRY domain-containing protein n=1 Tax=Pseudo-nitz... [more]
I0YT44_COCSC3.480e-1074.29B30.2/SPRY domain-containing protein n=1 Tax=Cocco... [more]
A0A8J9REB5_9CHLO3.520e-1074.29Set1/Ash2 histone methyltransferase complex subuni... [more]
A0A835DK97_9MAGN5.420e-1067.35B30.2/SPRY domain-containing protein n=1 Tax=Tetra... [more]
B8BV51_THAPS5.640e-1058.33B30.2/SPRY domain-containing protein n=1 Tax=Thala... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5700contigH-paniculata_contig5700:786..950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue4.5e-16
Seed eggNOG ortholog2880.D8LMA4
Preferred nameASH2L
KEGG koko:K13113,ko:K14964,ko:K14967
KEGG Pathwayko04212,ko04934,map04212,map04934
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000228,GO:0000723,GO:0000785,GO:0000790,GO:0000791,GO:0000902,GO:0000904,GO:0001067,GO:0001932,GO:0001933,GO:0002009,GO:0002164,GO:0002165,GO:0002168,GO:0002376,GO:0002520,GO:0002682,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005703,GO:0005719,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007444,GO:0007472,GO:0007474,GO:0007476,GO:0007552,GO:0007560,GO:0007568,GO:0008013,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008284,GO:0008340,GO:0008757,GO:0009058,GO:0009059,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009791,GO:0009793,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009965,GO:0009987,GO:0010016,GO:0010033,GO:0010154,GO:0010228,GO:0010259,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0014070,GO:0016043,GO:0016070,GO:0016278,GO:0016279,GO:0016358,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018130,GO:0018193,GO:0018205,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0019899,GO:0022008,GO:0022414,GO:0022607,GO:0030030,GO:0030097,GO:0030154,GO:0030182,GO:0031056,GO:0031057,GO:0031058,GO:0031060,GO:0031062,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031401,GO:0031490,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0032200,GO:0032259,GO:0032268,GO:0032269,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032989,GO:0032990,GO:0032991,GO:0033043,GO:0033044,GO:0033127,GO:0033128,GO:0033554,GO:0033993,GO:0034401,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034968,GO:0035075,GO:0035097,GO:0035107,GO:0035114,GO:0035120,GO:0035209,GO:0035220,GO:0035239,GO:0035295,GO:0036211,GO:0036314,GO:0040029,GO:0042054,GO:0042127,GO:0042221,GO:0042325,GO:0042326,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043627,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044665,GO:0044666,GO:0045595,GO:0045637,GO:0045652,GO:0045814,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0048096,GO:0048188,GO:0048189,GO:0048316,GO:0048366,GO:0048367,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048563,GO:0048569,GO:0048608,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048812,GO:0048813,GO:0048827,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051569,GO:0051571,GO:0051716,GO:0060249,GO:0060255,GO:0060290,GO:0060322,GO:0060429,GO:0060562,GO:0060776,GO:0061458,GO:0061630,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070647,GO:0070828,GO:0070868,GO:0070869,GO:0071103,GO:0071339,GO:0071704,GO:0071840,GO:0080090,GO:0080182,GO:0090304,GO:0097159,GO:0097305,GO:0097549,GO:0097659,GO:0098687,GO:0099402,GO:0120036,GO:0120039,GO:0140096,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901654,GO:1901700,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1904837,GO:1905268,GO:1905269,GO:1905392,GO:1990188,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.euchromatin binding
EggNOG OGsKOG2626@1,KOG2626@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko03041
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930612.0149038-CDS-H-paniculata_contig5700:785..9501622930612.0149038-CDS-H-paniculata_contig5700:785..950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5700 786..950 -
1691481372.096347-CDS-H-paniculata_contig5700:785..9501691481372.096347-CDS-H-paniculata_contig5700:785..950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5700 786..950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5700.13249.1prot_H-paniculata_contig5700.13249.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5700 786..950 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5700.13249.1

>prot_H-paniculata_contig5700.13249.1 ID=prot_H-paniculata_contig5700.13249.1|Name=mRNA_H-paniculata_contig5700.13249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
YWECTVLSPETKEGHCRLGWSRRTGSLQAPVGYDKSSFAYRDIAGSKVRT
SRALP
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mRNA from alignment at H-paniculata_contig5700:786..950-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5700.13249.1 ID=mRNA_H-paniculata_contig5700.13249.1|Name=mRNA_H-paniculata_contig5700.13249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at H-paniculata_contig5700:786..950- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATTGGGAATGCACAGTACTATCCCCCGAGACCAAGGAGGGTCATTGTCG
CCTTGGTTGGTCTCGCCGTACCGGCAGCCTCCAGGCCCCCGTGGGCTATG
ACAAGTCTAGCTTCGCGTATCGAGACATCGCCGGATCGAAGGTACGTACG
TCCCGCGCCCTACCT
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Coding sequence (CDS) from alignment at H-paniculata_contig5700:786..950-

>mRNA_H-paniculata_contig5700.13249.1 ID=mRNA_H-paniculata_contig5700.13249.1|Name=mRNA_H-paniculata_contig5700.13249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig5700:786..950- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATTGGGAATGCACAGTACTATCCCCCGAGACCAAGGAGGGTCATTGTCG
CCTTGGTTGGTCTCGCCGTACCGGCAGCCTCCAGGCCCCCGTGGGCTATG
ACAAGTCTAGCTTCGCGTATCGAGACATCGCCGGATCGAAGGTACGTACG
TCCCGCGCCCTACCTTATTGGGAATGCACAGTACTATCCCCCGAGACCAA
GGAGGGTCATTGTCGCCTTGGTTGGTCTCGCCGTACCGGCAGCCTCCAGG
CCCCCGTGGGCTATGACAAGTCTAGCTTCGCGTATCGAGACATCGCCGGA
TCGAAGGTACGTACGTCCCGCGCCCTACCT
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