mRNA_H-paniculata_contig5673.13210.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5673.13210.1
Unique NamemRNA_H-paniculata_contig5673.13210.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5673.13210.1 vs. uniprot
Match: D7FS05_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS05_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.130e-38
Identity = 100/156 (64.10%), Postives = 110/156 (70.51%), Query Frame = 1 
Query:    1 QVFGGYVTGIMGDEDNPQEERIDSVCEILSGATEEARPTSRERAAVASCCKQDLDEFRVTLKERWEARLGKEKKEREAAKAVKLKEMDSKKEAERRQVEXXXXXXXXXXXXXXXXXXXXQRERARLLGEYGYDSDPMDEEGNLLPPEEAEGGEGAA 468
            +V+GGYVTGIMGDEDNPQEERI+SV EILSGA EE                 DL EFR  L ERW+ ++  E+KE+EAAKA K KEMDSKK        XXXXXXXXXXXXXXXX    Q ERARLLGEYGYDSDP+DEEGN LPPEE   GEG +
Sbjct:   26 EVYGGYVTGIMGDEDNPQEERIESVIEILSGAAEEDN---------------DLGEFRSALNERWDMKVEHEEKEKEAAKAAKQKEMDSKKXXXXXXXXXXXXXXXXXXXXXXXXSAEEQAERARLLGEYGYDSDPVDEEGNPLPPEEGGDGEGGS 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5673.13210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS05_ECTSI1.130e-3864.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5673contigH-paniculata_contig5673:198..3257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue1.3e-25
Seed eggNOG ortholog2880.D7FS05
Hectar predicted targeting categoryother localisation
EggNOG OGs29Y8F@1,2RXTG@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_006970.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size486
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5673.13210.1prot_H-paniculata_contig5673.13210.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5673 198..3227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930606.84082-CDS-H-paniculata_contig5673:197..4071622930606.84082-CDS-H-paniculata_contig5673:197..407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5673 198..407 -
1691481369.6322038-CDS-H-paniculata_contig5673:197..4071691481369.6322038-CDS-H-paniculata_contig5673:197..407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5673 198..407 -
1622930606.855867-CDS-H-paniculata_contig5673:1867..20251622930606.855867-CDS-H-paniculata_contig5673:1867..2025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5673 1868..2025 -
1691481369.642708-CDS-H-paniculata_contig5673:1867..20251691481369.642708-CDS-H-paniculata_contig5673:1867..2025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5673 1868..2025 -
1622930606.8670645-CDS-H-paniculata_contig5673:3139..32271622930606.8670645-CDS-H-paniculata_contig5673:3139..3227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5673 3140..3227 -
1691481369.6528597-CDS-H-paniculata_contig5673:3139..32271691481369.6528597-CDS-H-paniculata_contig5673:3139..3227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5673 3140..3227 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930606.8787403-UTR-H-paniculata_contig5673:3227..32571622930606.8787403-UTR-H-paniculata_contig5673:3227..3257Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5673 3228..3257 -
1691481369.6635566-UTR-H-paniculata_contig5673:3227..32571691481369.6635566-UTR-H-paniculata_contig5673:3227..3257Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5673 3228..3257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5673.13210.1

>prot_H-paniculata_contig5673.13210.1 ID=prot_H-paniculata_contig5673.13210.1|Name=mRNA_H-paniculata_contig5673.13210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MGDEDNPQEERIDSVCEILSGATEEARPTSRERAAVASCCKQDLDEFRVT
LKERWEARLGKEKKEREAAKAVKLKEMDSKKEAERRQVEEADAARKAKAE
KMNQRSEEEQRERARLLGEYGYDSDPMDEEGNLLPPEEAEGGEGAAVSVE
C*
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mRNA from alignment at H-paniculata_contig5673:198..3257-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5673.13210.1 ID=mRNA_H-paniculata_contig5673.13210.1|Name=mRNA_H-paniculata_contig5673.13210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3060bp|location=Sequence derived from alignment at H-paniculata_contig5673:198..3257- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGTTCGGCGGGTACGTGACAGGTATTATGGGAGACGAAGACAACCC
ACAGGAGGAGCGAATAGACTCCGTGTGCGAGATACTCTCGGGGGCTACGG
AAGAGGCAAGACCGACCTGTTTGTAGTCCACTTGGGACGATAGATGTTCA
AGTTGCAAAGAGACGCTTGGGGCTTGTGTGCGCAATGTTACATCCCCACG
TGCTGTTACACTGTATGAAAGAGGCAATTATCTGCTCCCCCCCCTCTCTG
TGTGTGTAGAGCGACAGATAGTGATAAAGAGAGAGAGAGAGACCCCTAAA
AATTTAAAGCTTGCCGCAAGATATTAGCGGTTAGGTGATATGAAGAAAAA
TAACGCAAGAGAGGACTGTTTTACTGTTTGCTTCATTAATGTATGTATAT
AACGACCATTACTATTTGGTCCAATCGTAATCAATGATGACTTCAAAAAT
TATCCACGGATGAAAGTACATTTGCACACTTTTATTGATGTATGGGTACA
CGATGGATCCTGCGGCAAAGACACCCAAATGAGAAAATGAAATGATATGT
CATTAAATCGATGTGGGTTGAACTTGTTCAGTGTTTGCGAAGGGGGGTAT
GTTGGTCTTCGGATGCATGATGTCATCCTCCAATCTTGAAACGTGATGAA
TTTTTTTTTTGCAGTAATGGAATGTCTTGGCTCTCCCAACGATGAACAAT
GCAGCGAAATGCGATACTGTACATCTTTTCGACTTGCAGAATCCCGTGAA
TTCATAAAAGATTTTGAACGCATCTTGCGCTTCCGAGATCTTCCTGCGTC
CGTTTAGGCTATCTGTATCGTGTGCGTGCGTGTTTGTATGTGTGTATTTG
CTACAAGCTTTTGTGCACACTGACTGTAATCGGTGATCGGTATGATACCC
AAGCCTGCCGGGAACAGAAGCATGACACTGCTCCGGTACTTTCGGCGAAT
TTTTTATTTCATTCATATTTTTAACGCCATGTAGTTTAAAACGCCTGGAT
AGGATAAAATAGTTCGTATCACCCAAACACCCCACACTCCCACCAGGAGG
GAGAGCGATCGCGCCGAAAACAAATTGACGCGAAAAATAGGCGCGAAAAA
TATTGAACGGTTTTTTAGGACAGGTATGTATTCCTCTTGGGGATTGATCA
TTGATCATTGATTATTGATTATTTGCTGCCTTACGGGTAATTGTTCACCC
GATTCGGGGAATAGAGGTGAACTCGCTGTGAGCTCGGGAACGCGCTGCCG
TGGCTTCTTGCTGCAAACAGGACCTGGACGAGTTTCGAGTCACGTTGAAA
GAACGGTGGGAGGCTAGGTTAGGCAAGGAGAAAAAGGAGAGGGAAGCGGC
GAAGGCAGTCAAACTGAAGGAAATGGACAGCAAAAAGGAGGTGTGTATCA
TACTGCAGTCAGTCATTGCTTGGCACATGCGTCGACAGGATAGCACAGTA
GTACAGTGATTTTTATCTGTCTTTGAAGGTAGGTGTAAAAACATCGCGGA
CGATGTGACGTGCGACTATTTCGCACGGTGTACATATCATGTCCCCACCC
CGTTTTTCAGTGTGTATTTCTTACTTTCCATTCAGGACGGAACCCGACCA
GTAACTATGCCATGCCTATGTTGTTGTTCTACAAAAAGGCAAGCCGCTTT
CATTTATATATTTGTCATTTTCCAACCACAACCAAGTATCGGTGTATGCT
GCCATGACATGGCCTACGTACACCCTCTAGATCATGGTTTGGTAGAGACG
TTACGATGTTGTCGTCGCAGTCATGTTTTTGGCCTGGAGGAGTTTTTGCA
ATACATGAAACGTCGCCTTTTTTCACCAGAAAAGGTTAAAAAAAAGAAGA
AAAAAGGCTAGACATTGAGGTGCAACATTTGACGGGTAAGAAGTGGCGGG
AAAGACTGCATTGCACATGTAAAACGTTACCTGTAGGTGTGGTGAAAAAT
TGGAGTATGACAATATCGGCAGAATGAATCCTGTGAAGTTTTCGCTCTGT
AATGCCTCGCACACTCATCATGTAGAAGAGTCAGACCTCCATTTCTGTCG
TAGATGGAGTGACCATCGAGGGTCGGACACAGCTGAAAAGCTGTTCCGAT
AAAGGGACAATAATGCCATTGGTCGTTGTGTAGGGGGTCGGGGTTCGTGA
ACCCCAGGAACGTCAGGAACGTGCTCTCCACAAACGTACTATTAATATCT
GCCCTTTCTTAACACTTTGGGGGGTTCACCAACATATTTATATTGGTTGA
AACGCGATTATGTCTCGAGAAAAAAAAGGAGAATTGTTCTTGACGCGGTC
GATAACAACGCCGCTAATCGAACAGAGAAGATCTCTGCAAAGATTTCAGC
CCCCGGACAAATACGAATGCTTGCAAATGGTTTTCACAGAAAATTTTCAA
GTATTCGCCTGAGGTTCAAAATGAAGTCGTGTATTCTATGTGCTCCGGAC
CATCCACGATTGCCAATAATACTTGTAAATCGAATGGACAGCGGTGGGTA
CTTTATTACATGTGTCCGCTCATTCCGAACTCTGGCGAATAGTTTTTAAT
TTTCGTGGCGATCGCGCCAAGTACTCGTATTTGTCCGGGGGGCTGAAATG
TTTCATCCTTTCCCCAACCAAGTGTCTGTTTTAAGTACCTTTTTCGATTT
TTTTTTTTTTTTTTAGGCAGTTGATCATGGTGGCACCGTCTTTTTTTTTC
TTTTTTTTCTTTTTTTTCCTTTTCCGTTCGCACCTCGGTGCAGTGTAGTG
ACAGAAAATAATTTAGTTGTGATGAGTAATTAATTCCCGACCGGCTTGTA
CTTTAATTACGATCTATTACATGTATATGCACGCGCACGACTCCACGCAG
GCAGAACGGCGACAAGTTGAAGAAGCCGACGCGGCACGAAAGGCCAAGGC
GGAGAAGATGAACCAACGCTCGGAAGAGGAACAGCGCGAGCGCGCCAGGC
TCCTGGGAGAGTACGGCTACGATTCGGATCCCATGGATGAGGAAGGGAAC
CTCTTGCCTCCTGAGGAGGCAGAAGGAGGAGAGGGGGCCGCGGTAAGTGT
CGAATGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig5673:198..3257-

>mRNA_H-paniculata_contig5673.13210.1 ID=mRNA_H-paniculata_contig5673.13210.1|Name=mRNA_H-paniculata_contig5673.13210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig5673:198..3257- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGACGAAGACAACCCACAGGAGGAGCGAATAGACTCCGTGTGCGA
GATACTCTCGGGGGCTACGGAAGAGGCAAGACCGACCTATGGGAGACGAA
GACAACCCACAGGAGGAGCGAATAGACTCCGTGTGCGAGATACTCTCGGG
GGCTACGGAAGAGGCAAGACCGACCTCTCGGGAACGCGCTGCCGTGGCTT
CTTGCTGCAAACAGGACCTGGACGAGTTTCGAGTCACGTTGAAAGAACGG
TGGGAGGCTAGGTTAGGCAAGGAGAAAAAGGAGAGGGAAGCGGCGAAGGC
AGTCAAACTGAAGGAAATGGACAGCAAAAAGGAGCTCGGGAACGCGCTGC
CGTGGCTTCTTGCTGCAAACAGGACCTGGACGAGTTTCGAGTCACGTTGA
AAGAACGGTGGGAGGCTAGGTTAGGCAAGGAGAAAAAGGAGAGGGAAGCG
GCGAAGGCAGTCAAACTGAAGGAAATGGACAGCAAAAAGGAGGCAGAACG
GCGACAAGTTGAAGAAGCCGACGCGGCACGAAAGGCCAAGGCGGAGAAGA
TGAACCAACGCTCGGAAGAGGAACAGCGCGAGCGCGCCAGGCTCCTGGGA
GAGTACGGCTACGATTCGGATCCCATGGATGAGGAAGGGAACCTCTTGCC
TCCTGAGGAGGCAGAAGGAGGAGAGGGGGCCGCGGTAAGTGTCGAATGTT
AAGCAGAACGGCGACAAGTTGAAGAAGCCGACGCGGCACGAAAGGCCAAG
GCGGAGAAGATGAACCAACGCTCGGAAGAGGAACAGCGCGAGCGCGCCAG
GCTCCTGGGAGAGTACGGCTACGATTCGGATCCCATGGATGAGGAAGGGA
ACCTCTTGCCTCCTGAGGAGGCAGAAGGAGGAGAGGGGGCCGCGGTAAGT
GTCGAATGTTAA
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