mRNA_H-paniculata_contig56160.13143.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56160.13143.1
Unique NamemRNA_H-paniculata_contig56160.13143.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig56160.13143.1 vs. uniprot
Match: A0A2A9NB75_9AGAR (CCHC-type domain-containing protein (Fragment) n=1 Tax=Amanita thiersii Skay4041 TaxID=703135 RepID=A0A2A9NB75_9AGAR)

HSP 1 Score: 55.1 bits (131), Expect = 1.280e-6
Identity = 45/132 (34.09%), Postives = 58/132 (43.94%), Query Frame = 1 
Query:    1 CWVCGSSEHLARRCPK----RHRDTNKGTVALLATIKGPKAMIAVTDDRKTTDNPAVTREKEHWNSDTGATDHMTSDETAFEDYTPALLGTMCEIANGTFVPVEGWGRLVFRVSQPGGTSRVAVLNRVAHVP 384
            C+ C    H  RRCPK    R +  N    A  A      A  A T    ++D    T     WN+DTGAT HMT     F+DY    +    ++A+ + V  EG G +VFR +  G   R     RV HVP
Sbjct:   70 CYFCQEIGHTVRRCPKLKDKREQGGNASNKAERAEETTESAGHASTLCYTSSDTS--TNSDWSWNTDTGATSHMTPHRQWFKDYKHYRVPI--KLADNSVVYSEGVGNVVFRPNLNGKVGRDIEFTRVLHVP 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56160.13143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2A9NB75_9AGAR1.280e-634.09CCHC-type domain-containing protein (Fragment) n=1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56160contigH-paniculata_contig56160:695..1078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930597.3263485-CDS-H-paniculata_contig56160:694..10781622930597.3263485-CDS-H-paniculata_contig56160:694..1078Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56160 695..1078 +
1691481365.1705072-CDS-H-paniculata_contig56160:694..10781691481365.1705072-CDS-H-paniculata_contig56160:694..1078Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56160 695..1078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56160.13143.1prot_H-paniculata_contig56160.13143.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56160 695..1078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56160.13143.1

>prot_H-paniculata_contig56160.13143.1 ID=prot_H-paniculata_contig56160.13143.1|Name=mRNA_H-paniculata_contig56160.13143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
CWVCGSSEHLARRCPKRHRDTNKGTVALLATIKGPKAMIAVTDDRKTTDN
PAVTREKEHWNSDTGATDHMTSDETAFEDYTPALLGTMCEIANGTFVPVE
GWGRLVFRVSQPGGTSRVAVLNRVAHVP
back to top

mRNA from alignment at H-paniculata_contig56160:695..1078+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56160.13143.1 ID=mRNA_H-paniculata_contig56160.13143.1|Name=mRNA_H-paniculata_contig56160.13143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=384bp|location=Sequence derived from alignment at H-paniculata_contig56160:695..1078+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTGGGTGTGCGGTAGCTCAGAGCACCTCGCGAGACGGTGCCCAAAACG
CCACCGCGATACCAACAAAGGAACAGTGGCACTCCTGGCTACCATAAAAG
GACCCAAGGCAATGATAGCCGTAACTGACGATCGCAAGACAACAGATAAC
CCTGCCGTGACCAGAGAGAAGGAACACTGGAATTCAGACACCGGCGCGAC
AGACCACATGACGTCGGATGAGACTGCGTTCGAGGACTACACTCCAGCGC
TCCTGGGGACCATGTGTGAAATCGCCAACGGGACATTCGTGCCTGTAGAG
GGGTGGGGACGCCTTGTATTTCGAGTAAGTCAGCCGGGGGGAACATCACG
GGTAGCAGTGTTAAACAGGGTTGCCCACGTACCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig56160:695..1078+

>mRNA_H-paniculata_contig56160.13143.1 ID=mRNA_H-paniculata_contig56160.13143.1|Name=mRNA_H-paniculata_contig56160.13143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig56160:695..1078+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTGGGTGTGCGGTAGCTCAGAGCACCTCGCGAGACGGTGCCCAAAACG
CCACCGCGATACCAACAAAGGAACAGTGGCACTCCTGGCTACCATAAAAG
GACCCAAGGCAATGATAGCCGTAACTGACGATCGCAAGACAACAGATAAC
CCTGCCGTGACCAGAGAGAAGGAACACTGGAATTCAGACACCGGCGCGAC
AGACCACATGACGTCGGATGAGACTGCGTTCGAGGACTACACTCCAGCGC
TCCTGGGGACCATGTGTGAAATCGCCAACGGGACATTCGTGCCTGTAGAG
GGGTGGGGACGCCTTGTATTTCGAGTAAGTCAGCCGGGGGGAACATCACG
GGTAGCAGTGTTAAACAGGGTTGCCCACGTACCCTGCTGGGTGTGCGGTA
GCTCAGAGCACCTCGCGAGACGGTGCCCAAAACGCCACCGCGATACCAAC
AAAGGAACAGTGGCACTCCTGGCTACCATAAAAGGACCCAAGGCAATGAT
AGCCGTAACTGACGATCGCAAGACAACAGATAACCCTGCCGTGACCAGAG
AGAAGGAACACTGGAATTCAGACACCGGCGCGACAGACCACATGACGTCG
GATGAGACTGCGTTCGAGGACTACACTCCAGCGCTCCTGGGGACCATGTG
TGAAATCGCCAACGGGACATTCGTGCCTGTAGAGGGGTGGGGACGCCTTG
TATTTCGAGTAAGTCAGCCGGGGGGAACATCACGGGTAGCAGTGTTAAAC
AGGGTTGCCCACGTACCC
back to top