mRNA_H-paniculata_contig56149.13140.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56149.13140.1
Unique NamemRNA_H-paniculata_contig56149.13140.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig56149.13140.1 vs. uniprot
Match: A0A6B7EXG5_9PHAE (50S ribosomal protein L29 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EXG5_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.670e-32
Identity = 60/68 (88.24%), Postives = 67/68 (98.53%), Query Frame = 1 
Query:    1 MSLPKIDEIISLTDSELEDEILNVKKELFRLRVRRGTKQSFKSHQIKHSKHRLSQLLMIKKSDKQRLE 204
            MSLPKIDE+ISLT+ ELEDEILNVKKELF+LR+RRGTKQSFKSHQIKHSKHRLSQLLMI+KS+KQ+LE
Sbjct:    1 MSLPKIDEVISLTNRELEDEILNVKKELFKLRLRRGTKQSFKSHQIKHSKHRLSQLLMIRKSNKQKLE 68
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BLAST of mRNA_H-paniculata_contig56149.13140.1 vs. uniprot
Match: A0A7T8JK69_SCYLO (50S ribosomal protein L29, chloroplastic n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JK69_SCYLO)

HSP 1 Score: 105 bits (261), Expect = 2.230e-28
Identity = 56/64 (87.50%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 MSLPKIDEIISLTDSELEDEILNVKKELFRLRVRRGTKQSFKSHQIKHSKHRLSQLLMIKKSDK 192
            MSLPKIDEI  LT  ELEDEILNVKKELFRLR+RRGTKQSFKSHQIKHSKHRL+QLLMIK S K
Sbjct:    1 MSLPKIDEITMLTQGELEDEILNVKKELFRLRLRRGTKQSFKSHQIKHSKHRLAQLLMIKNSQK 64
[Close]
BLAST of mRNA_H-paniculata_contig56149.13140.1 vs. uniprot
Match: D1J744_ECTSI (50S ribosomal protein L29, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J744_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 7.490e-27
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 MSLPKIDEIISLTDSELEDEILNVKKELFRLRVRRGTKQSFKSHQIKHSKHRLSQLLMIKKSD 189
            MSLPKIDEI  L+ SELEDEI NVKKELFRLR+RRGTKQSFKSHQ+KHSKHRL+QLLMIK  D
Sbjct:    1 MSLPKIDEITMLSKSELEDEIFNVKKELFRLRLRRGTKQSFKSHQLKHSKHRLAQLLMIKNRD 63
[Close]
BLAST of mRNA_H-paniculata_contig56149.13140.1 vs. uniprot
Match: A0A1I9LVL3_9PHAE (50S ribosomal protein L29, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVL3_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.260e-24
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 MSLPKIDEIISLTDSELEDEILNVKKELFRLRVRRGTKQS--FKSHQIKHSKHRLSQLLMIKKS 186
            MSLPKI+EII L+ SELEDEILNVKKELF+LR+RRGTKQ   FKSHQ KHSKHRL+QLLMI+KS
Sbjct:    1 MSLPKINEIIMLSQSELEDEILNVKKELFKLRLRRGTKQKQFFKSHQFKHSKHRLAQLLMIQKS 64
[Close]
BLAST of mRNA_H-paniculata_contig56149.13140.1 vs. uniprot
Match: A0A8F0F7Y7_9PHAE (Ribosomal protein L29 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Y7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 5.780e-24
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 MSLPKIDEIISLTDSELEDEILNVKKELFRLRVRRGTKQSFKSHQIKHSKHRLSQLLMIKKSD 189
            MSLPKIDEI +L   +LE+EILN+KKELF+LR+RRG KQSFKSHQ KH KHRL+QLLMIKKS+
Sbjct:    1 MSLPKIDEIKNLNKDDLENEILNIKKELFKLRLRRGAKQSFKSHQFKHGKHRLAQLLMIKKSN 63
[Close]
BLAST of mRNA_H-paniculata_contig56149.13140.1 vs. uniprot
Match: A0A5B9RGZ9_9PHAE (50S ribosomal protein L29, chloroplastic n=23 Tax=Laminariales TaxID=2886 RepID=A0A5B9RGZ9_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 6.760e-23
Identity = 46/63 (73.02%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 MSLPKIDEIISLTDSELEDEILNVKKELFRLRVRRGTKQSFKSHQIKHSKHRLSQLLMIKKSD 189
            MSLPKID+I +L  +ELE+EILN+KK+LF+LR+RRG KQSFKSHQ KH KHRL+QLLMI+KS+
Sbjct:    1 MSLPKIDDIKNLDKNELENEILNIKKQLFKLRLRRGAKQSFKSHQFKHGKHRLAQLLMIQKSN 63
[Close]
BLAST of mRNA_H-paniculata_contig56149.13140.1 vs. uniprot
Match: A0A8F0F9N7_9PHAE (Ribosomal protein L29 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9N7_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 8.760e-22
Identity = 45/62 (72.58%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 MSLPKIDEIISLTDSELEDEILNVKKELFRLRVRRGTKQSFKSHQIKHSKHRLSQLLMIKKS 186
            MSLPK+DEI +L   ELE+EILN+K +LF+LR+RRG KQSFKSHQ KH KHRL+QLLMIKK+
Sbjct:    1 MSLPKMDEIKTLKKDELENEILNIKTQLFKLRLRRGAKQSFKSHQFKHGKHRLAQLLMIKKA 62
[Close]
BLAST of mRNA_H-paniculata_contig56149.13140.1 vs. uniprot
Match: A0A8F0FB43_9PHAE (Ribosomal protein L29 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB43_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 9.230e-21
Identity = 44/63 (69.84%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 MSLPKIDEIISLTDSELEDEILNVKKELFRLRVRRGTKQSFKSHQIKHSKHRLSQLLMIKKSD 189
            MSLPKI EI +LT+++LE+EIL++KK+LF+LR+ R TKQSFKSHQ KH+KHRL QLLMI+KS+
Sbjct:    1 MSLPKIAEIQTLTNTDLENEILSIKKQLFKLRLCRATKQSFKSHQFKHAKHRLGQLLMIQKSN 63
[Close]
BLAST of mRNA_H-paniculata_contig56149.13140.1 vs. uniprot
Match: A0A2R4QQ56_9PHAE (50S ribosomal protein L29 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ56_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.650e-20
Identity = 44/62 (70.97%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 MSLPKIDEIISLTDSELEDEILNVKKELFRLRVRRGTKQSFKSHQIKHSKHRLSQLLMIKKS 186
            MSLP I+EI SL  +ELE+EILN+KKELF+LR  RG KQ+FKSHQIKH KHRL+QLLMI+++
Sbjct:    1 MSLPNINEIQSLNINELENEILNIKKELFKLRFYRGNKQAFKSHQIKHQKHRLAQLLMIRQN 62
[Close]
BLAST of mRNA_H-paniculata_contig56149.13140.1 vs. uniprot
Match: A0A6B9TQJ7_SARFS (50S ribosomal protein L29, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A6B9TQJ7_SARFS)

HSP 1 Score: 82.4 bits (202), Expect = 2.180e-19
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 MSLPKIDEIISLTDSELEDEILNVKKELFRLRVRRGTKQSFKSHQIKHSKHRLSQLLMIKKSD 189
            MSLPK+DEI +L  +ELE+EILN+KKELF+LR  R  KQSFKSHQ KH KHRL+QLLM  +S+
Sbjct:    1 MSLPKMDEIQNLNKNELENEILNIKKELFKLRFSRANKQSFKSHQFKHQKHRLAQLLMKHQSN 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56149.13140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B7EXG5_9PHAE2.670e-3288.2450S ribosomal protein L29 n=1 Tax=Cladosiphon okam... [more]
A0A7T8JK69_SCYLO2.230e-2887.5050S ribosomal protein L29, chloroplastic n=4 Tax=S... [more]
D1J744_ECTSI7.490e-2784.1350S ribosomal protein L29, chloroplastic n=2 Tax=E... [more]
A0A1I9LVL3_9PHAE3.260e-2481.2550S ribosomal protein L29, chloroplastic n=1 Tax=P... [more]
A0A8F0F7Y7_9PHAE5.780e-2476.19Ribosomal protein L29 n=2 Tax=Laminariales TaxID=2... [more]
A0A5B9RGZ9_9PHAE6.760e-2373.0250S ribosomal protein L29, chloroplastic n=23 Tax=... [more]
A0A8F0F9N7_9PHAE8.760e-2272.58Ribosomal protein L29 n=1 Tax=Chorda asiatica TaxI... [more]
A0A8F0FB43_9PHAE9.230e-2169.84Ribosomal protein L29 n=1 Tax=Desmarestia aculeata... [more]
A0A2R4QQ56_9PHAE2.650e-2070.9750S ribosomal protein L29 n=3 Tax=Fucaceae TaxID=3... [more]
A0A6B9TQJ7_SARFS2.180e-1968.2550S ribosomal protein L29, chloroplastic n=13 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56149contigH-paniculata_contig56149:416..622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score73.6
Seed ortholog evalue4.2e-11
Seed eggNOG ortholog864702.OsccyDRAFT_3432
Preferred namerpmC
KEGG koko:K02904
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Belongs to the universal ribosomal protein uL29 family
EggNOG OGs1G906@1117,1HCSB@1150,COG0255@1,COG0255@2
COG Functional cat.J
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size207
Cds size207
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930597.178345-CDS-H-paniculata_contig56149:415..6221622930597.178345-CDS-H-paniculata_contig56149:415..622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56149 416..622 -
1691481365.1317337-CDS-H-paniculata_contig56149:415..6221691481365.1317337-CDS-H-paniculata_contig56149:415..622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56149 416..622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56149.13140.1prot_H-paniculata_contig56149.13140.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56149 416..622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56149.13140.1

>prot_H-paniculata_contig56149.13140.1 ID=prot_H-paniculata_contig56149.13140.1|Name=mRNA_H-paniculata_contig56149.13140.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
MSLPKIDEIISLTDSELEDEILNVKKELFRLRVRRGTKQSFKSHQIKHSK
HRLSQLLMIKKSDKQRLE*
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mRNA from alignment at H-paniculata_contig56149:416..622-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56149.13140.1 ID=mRNA_H-paniculata_contig56149.13140.1|Name=mRNA_H-paniculata_contig56149.13140.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig56149:416..622- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTCTACCAAAAATCGATGAAATTATAAGTTTAACGGATAGTGAATT
AGAAGACGAAATTTTGAATGTAAAAAAAGAATTGTTTAGATTACGCGTAC
GACGTGGAACTAAACAATCTTTCAAATCACATCAAATAAAGCATAGTAAA
CATCGGCTATCGCAACTATTAATGATAAAAAAAAGCGATAAGCAAAGATT
AGAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig56149:416..622-

>mRNA_H-paniculata_contig56149.13140.1 ID=mRNA_H-paniculata_contig56149.13140.1|Name=mRNA_H-paniculata_contig56149.13140.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig56149:416..622- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTCTACCAAAAATCGATGAAATTATAAGTTTAACGGATAGTGAATT
AGAAGACGAAATTTTGAATGTAAAAAAAGAATTGTTTAGATTACGCGTAC
GACGTGGAACTAAACAATCTTTCAAATCACATCAAATAAAGCATAGTAAA
CATCGGCTATCGCAACTATTAATGATAAAAAAAAGCGATAAGCAAAGATT
AGAGTAGATGAGTCTACCAAAAATCGATGAAATTATAAGTTTAACGGATA
GTGAATTAGAAGACGAAATTTTGAATGTAAAAAAAGAATTGTTTAGATTA
CGCGTACGACGTGGAACTAAACAATCTTTCAAATCACATCAAATAAAGCA
TAGTAAACATCGGCTATCGCAACTATTAATGATAAAAAAAAGCGATAAGC
AAAGATTAGAGTAG
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