mRNA_H-paniculata_contig5614.13137.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5614.13137.1
Unique NamemRNA_H-paniculata_contig5614.13137.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5614.13137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5614contigH-paniculata_contig5614:6274..6875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size604
Cds size576
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930596.7436607-UTR-H-paniculata_contig5614:6273..62991622930596.7436607-UTR-H-paniculata_contig5614:6273..6299Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5614 6274..6299 +
1691481364.9490867-UTR-H-paniculata_contig5614:6273..62991691481364.9490867-UTR-H-paniculata_contig5614:6273..6299Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5614 6274..6299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930596.760228-CDS-H-paniculata_contig5614:6299..68751622930596.760228-CDS-H-paniculata_contig5614:6299..6875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5614 6300..6875 +
1691481364.9577603-CDS-H-paniculata_contig5614:6299..68751691481364.9577603-CDS-H-paniculata_contig5614:6299..6875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5614 6300..6875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5614.13137.1prot_H-paniculata_contig5614.13137.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5614 6300..6875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5614.13137.1

>prot_H-paniculata_contig5614.13137.1 ID=prot_H-paniculata_contig5614.13137.1|Name=mRNA_H-paniculata_contig5614.13137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=192bp
MLTGPPRPHPGSSTASPLTANTTPDRPTTEDWLSPPKEGSSSKAPPRGNS
RLKGAGGTSSGGRRPASRANSTGGVENERDRQLHSKRTSASSKGNSHTSS
SNRTNNSHTSSPRPVASAAAKLPPDGRLSAGPGESARRVGGCGGGAGGPK
QTGQVFIADGRVEVGYDVNSKERGTSSSSQSGRGKGKGSVKV
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mRNA from alignment at H-paniculata_contig5614:6274..6875+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5614.13137.1 ID=mRNA_H-paniculata_contig5614.13137.1|Name=mRNA_H-paniculata_contig5614.13137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=602bp|location=Sequence derived from alignment at H-paniculata_contig5614:6274..6875+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGTCACTACCACCACGTCGACTCGATGCTCACAGGTCCACCACGCCCC
CACCCTGGCTCGTCCACGGCGTCGCCTCTGACGGCCAACACAACGCCGGA
CAGACCCACCACGGAGGACTGGCTCTCTCCACCGAAGGAAGGGTCCTCCT
CCAAGGCGCCTCCCCGCGGCAACTCTCGCTTGAAAGGAGCCGGAGGAACC
AGCAGCGGCGGGCGGAGACCGGCCAGCCGTGCAAACAGCACCGGTGGCGT
GGAGAACGAACGGGACAGACAGTTGCACTCCAAGCGCACGTCGGCGTCGT
CCAAGGGTAATAGTCATACTAGTAGTAGTAATCGTACGAATAATAGTCAT
ACTAGTAGCCCGAGGCCGGTAGCGTCGGCGGCTGCTAAACTCCCCCCAGA
TGGACGCTTATCCGCTGGCCCTGGCGAATCCGCACGGCGAGTTGGAGGCT
GCGGTGGTGGTGCCGGCGGGCCCAAACAAACGGGGCAAGTGTTCATCGCC
GATGGCAGGGTAGAGGTAGGATACGACGTGAACAGTAAGGAGCGAGGGAC
GTCCTCCTCGTCCCAGAGCGGCCGGGGTAAAGGTAAAGGTTCTGTGAAGG
TG
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Coding sequence (CDS) from alignment at H-paniculata_contig5614:6274..6875+

>mRNA_H-paniculata_contig5614.13137.1 ID=mRNA_H-paniculata_contig5614.13137.1|Name=mRNA_H-paniculata_contig5614.13137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at H-paniculata_contig5614:6274..6875+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCACAGGTCCACCACGCCCCCACCCTGGCTCGTCCACGGCGTCGCC
TCTGACGGCCAACACAACGCCGGACAGACCCACCACGGAGGACTGGCTCT
CTCCACCGAAGGAAGGGTCCTCCTCCAAGGCGCCTCCCCGCGGCAACTCT
CGCTTGAAAGGAGCCGGAGGAACCAGCAGCGGCGGGCGGAGACCGGCCAG
CCGTGCAAACAGCACCGGTGGCGTGGAGAACGAACGGGACAGACAGTTGC
ACTCCAAGCGCACGTCGGCGTCGTCCAAGGGTAATAGTCATACTAGTAGT
AGTAATCGTACGAATAATAGTCATACTAGTAGCCCGAGGCCGGTAGCGTC
GGCGGCTGCTAAACTCCCCCCAGATGGACGCTTATCCGCTGGCCCTGGCG
AATCCGCACGGCGAGTTGGAGGCTGCGGTGGTGGTGCCGGCGGGCCCAAA
CAAACGGGGCAAGTGTTCATCGCCGATGGCAGGGTAGAGGTAGGATACGA
CGTGAACAGTAAGGAGCGAGGGACGTCCTCCTCGTCCCAGAGCGGCCGGG
GTAAAGGTAAAGGTTCTGTGAAGGTGATGCTCACAGGTCCACCACGCCCC
CACCCTGGCTCGTCCACGGCGTCGCCTCTGACGGCCAACACAACGCCGGA
CAGACCCACCACGGAGGACTGGCTCTCTCCACCGAAGGAAGGGTCCTCCT
CCAAGGCGCCTCCCCGCGGCAACTCTCGCTTGAAAGGAGCCGGAGGAACC
AGCAGCGGCGGGCGGAGACCGGCCAGCCGTGCAAACAGCACCGGTGGCGT
GGAGAACGAACGGGACAGACAGTTGCACTCCAAGCGCACGTCGGCGTCGT
CCAAGGGTAATAGTCATACTAGTAGTAGTAATCGTACGAATAATAGTCAT
ACTAGTAGCCCGAGGCCGGTAGCGTCGGCGGCTGCTAAACTCCCCCCAGA
TGGACGCTTATCCGCTGGCCCTGGCGAATCCGCACGGCGAGTTGGAGGCT
GCGGTGGTGGTGCCGGCGGGCCCAAACAAACGGGGCAAGTGTTCATCGCC
GATGGCAGGGTAGAGGTAGGATACGACGTGAACAGTAAGGAGCGAGGGAC
GTCCTCCTCGTCCCAGAGCGGCCGGGGTAAAGGTAAAGGTTCTGTGAAGG
TG
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