mRNA_H-paniculata_contig56096.13129.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56096.13129.1
Unique NamemRNA_H-paniculata_contig56096.13129.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig56096.13129.1 vs. uniprot
Match: A0A6H5JJW3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW3_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.980e-15
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1
Query:    1 PRNIDDVRRSKYCPFWEEAIQREMGGHAKTGTFSVISD-SEGKKPLRGHFIFLYKTNEMGDVVKFKSRLVADGRTQTQDVDYDEGFAPTPSA 273
            P    DV  SKY  FWE A++ E+ GH KTGTF+ + +  EG+K +   ++F +KTNE G +V FK+R+VA G +Q   +D+    +  PSA
Sbjct:   47 PMTYKDVICSKYKVFWEAAMEEEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSA 138          
BLAST of mRNA_H-paniculata_contig56096.13129.1 vs. uniprot
Match: A0A2M4CV35_ANODA (Putative pol polyprotein n=4 Tax=argyritarsis section TaxID=44545 RepID=A0A2M4CV35_ANODA)

HSP 1 Score: 72.8 bits (177), Expect = 5.550e-13
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 PRNIDDVRRSKYCPFWEEAIQREMGGHAKTGTFSVISDSEGKKPLRGHFIFLYKTNEMGDVVKFKSRLVADGRTQTQDVDYDEGFAP 261
            P +  +  +S +   W+EA+  EM  H K  T+ V      KK +   ++F  K NE+G+VV+FK+RLVA G  Q   VDYDE FAP
Sbjct:  771 PTSWQEAMKSSHHDEWKEAMDAEMFSHEKNSTWEVTELPPDKKAIGCRWVFKLKKNELGNVVRFKARLVAQGFNQQYGVDYDETFAP 857          
BLAST of mRNA_H-paniculata_contig56096.13129.1 vs. uniprot
Match: A0A6B9KLA8_9VIRU (Gag-Pol polyprotein n=2 Tax=Atrato Retro-like virus TaxID=2689360 RepID=A0A6B9KLA8_9VIRU)

HSP 1 Score: 72.4 bits (176), Expect = 7.590e-13
Identity = 32/87 (36.78%), Postives = 49/87 (56.32%), Query Frame = 1
Query:    1 PRNIDDVRRSKYCPFWEEAIQREMGGHAKTGTFSVISDSEGKKPLRGHFIFLYKTNEMGDVVKFKSRLVADGRTQTQDVDYDEGFAP 261
            P+ +++   S     W  A+  E+  H K GT+ +     GKK +   ++F  KTNE G+V++ K+R+VA G  Q   +DYDE FAP
Sbjct:  863 PKTLEEALESAESSAWRAAMDEEINSHMKNGTWELTHLPPGKKAVGCRWVFKEKTNEKGEVIRHKARIVAQGHVQKYGIDYDEVFAP 949          
BLAST of mRNA_H-paniculata_contig56096.13129.1 vs. uniprot
Match: A0A6H5KLE6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.150e-12
Identity = 35/92 (38.04%), Postives = 54/92 (58.70%), Query Frame = 1
Query:    1 PRNIDDVRRSKYCPFWEEAIQREMGGHAKTGTFSV-ISDSEGKKPLRGHFIFLYKTNEMGDVVKFKSRLVADGRTQTQDVDYDEGFAPTPSA 273
            P + ++ R+SKY   W++AI  E GG  + GTF++ +    G   +   +++ +K NE G ++K K+RLVA G  Q   VDY E F+PT  A
Sbjct:   15 PSSYNEARQSKYSSIWDKAISAEFGGLLRAGTFALAVKIPIGCNVIDARWVYKWKANETGKILKAKARLVAKGFKQKHGVDYFETFSPTAHA 106          
BLAST of mRNA_H-paniculata_contig56096.13129.1 vs. uniprot
Match: A0A5D3C971_CUCME (Putative mitochondrial protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3C971_CUCME)

HSP 1 Score: 65.9 bits (159), Expect = 8.820e-12
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    1 PRNIDDVRRSKYCPFWEEAIQREMGGHAKTGTFSVISDSEGKKPLRGHFIFLYKTNEMGDVVKFKSRLVADGRTQTQDVDYDEGFAP 261
            P  +D     +Y   W  A+Q E+    +   ++ +S SEG   +   ++F  KT+E+G V+K K+RLVA G TQ +D+D+DE FAP
Sbjct:   43 PSTVDSAFMDEY---WLNAMQEELLQFRRNNVWTFVSKSEGVNVIGTKWVFKNKTDEVGCVMKNKARLVAQGYTQVEDIDFDETFAP 126          
BLAST of mRNA_H-paniculata_contig56096.13129.1 vs. uniprot
Match: A0A507BSG4_9FUNG (DNA-directed DNA polymerase n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507BSG4_9FUNG)

HSP 1 Score: 68.6 bits (166), Expect = 1.670e-11
Identity = 31/88 (35.23%), Postives = 47/88 (53.41%), Query Frame = 1
Query:    1 PRNIDDVRRSKYCPFWEEAIQREMGGHAKTGTFSVISDSEGKKPLRGHFIFLYKTNEMGDVVKFKSRLVADGRTQTQDVDYDEGFAPT 264
            P++IDD    +    W +A++ EM        + ++        + G ++F YK NE G +VK K+R VA G TQ  ++DY E FAPT
Sbjct:  234 PKSIDDALEHRDADNWNQAMEEEMASFKAHDVYELVERQPWMNVIGGKWVFAYKRNEEGQIVKHKARYVAKGFTQRYNIDYKETFAPT 321          
BLAST of mRNA_H-paniculata_contig56096.13129.1 vs. uniprot
Match: A0A6A3LFJ7_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LFJ7_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.250e-11
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = 1
Query:    1 PRNIDDVRRSKYCPFWEEAIQREMGGHAKTGTFSVISDS---EGKKPLRGHFIFLYKTNEMGDVVKFKSRLVADGRTQTQDVDYDEGFAP 261
            PR   +  RSKY PFWE A+ +++G     G    I  +   EG+K L+  ++F  KT+ +G +V+F++R+V  G  Q   +DY E F+P
Sbjct:  467 PRTRREALRSKYAPFWEAAMDKQVGALRAKGVLKTIPRNQLPEGQKLLKTMWVFDAKTDHLGYIVEFRARIVGRGDKQRPGLDYQETFSP 556          
BLAST of mRNA_H-paniculata_contig56096.13129.1 vs. uniprot
Match: A0A6A3WUZ3_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WUZ3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.280e-11
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = 1
Query:    1 PRNIDDVRRSKYCPFWEEAIQREMGGHAKTGTFSVISDS---EGKKPLRGHFIFLYKTNEMGDVVKFKSRLVADGRTQTQDVDYDEGFAP 261
            PR   +  RSKY PFWE A+ +++G     G    I  +   EG+K L+  ++F  KT+ +G +V+F++R+V  G  Q   +DY E F+P
Sbjct:  267 PRTRREALRSKYAPFWEAAMDKQVGALRAKGVLKTIPRNQLPEGQKLLKTMWVFDAKTDHLGYIVEFRARIVGRGDKQRPGLDYQETFSP 356          
BLAST of mRNA_H-paniculata_contig56096.13129.1 vs. uniprot
Match: A0A6A4FC17_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FC17_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.310e-11
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = 1
Query:    1 PRNIDDVRRSKYCPFWEEAIQREMGGHAKTGTFSVISDS---EGKKPLRGHFIFLYKTNEMGDVVKFKSRLVADGRTQTQDVDYDEGFAP 261
            PR   +  RSKY PFWE A+ +++G     G    I  +   EG+K L+  ++F  KT+ +G +V+F++R+V  G  Q   +DY E F+P
Sbjct:  499 PRTRREALRSKYAPFWEAAMDKQVGALRAKGVLKTIPRNQLPEGQKLLKTMWVFDAKTDHLGYIVEFRARIVGRGDKQRPGLDYQETFSP 588          
BLAST of mRNA_H-paniculata_contig56096.13129.1 vs. uniprot
Match: A0A182G7X1_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G7X1_AEDAL)

HSP 1 Score: 67.4 bits (163), Expect = 4.320e-11
Identity = 31/87 (35.63%), Postives = 48/87 (55.17%), Query Frame = 1
Query:    1 PRNIDDVRRSKYCPFWEEAIQREMGGHAKTGTFSVISDSEGKKPLRGHFIFLYKTNEMGDVVKFKSRLVADGRTQTQDVDYDEGFAP 261
            P   ++  +S     W  A+  E   H   GT+ ++    GKK +   ++F  K NE+G+V +FK+R+VA G +Q   VD+DE FAP
Sbjct:  462 PTTFNEAMKSSESRSWRSAMDDEYHSHMVNGTWDLVDLPAGKKIVGSRWVFKAKQNEVGEVTRFKARIVAQGYSQRYGVDFDEVFAP 548          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56096.13129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJW3_9PHAE1.980e-1542.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2M4CV35_ANODA5.550e-1341.38Putative pol polyprotein n=4 Tax=argyritarsis sect... [more]
A0A6B9KLA8_9VIRU7.590e-1336.78Gag-Pol polyprotein n=2 Tax=Atrato Retro-like viru... [more]
A0A6H5KLE6_9PHAE1.150e-1238.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5D3C971_CUCME8.820e-1237.93Putative mitochondrial protein n=1 Tax=Cucumis mel... [more]
A0A507BSG4_9FUNG1.670e-1135.23DNA-directed DNA polymerase n=1 Tax=Synchytrium en... [more]
A0A6A3LFJ7_9STRA4.250e-1136.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3WUZ3_9STRA4.280e-1136.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4FC17_9STRA4.310e-1136.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182G7X1_AEDAL4.320e-1135.63Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56096contigH-paniculata_contig56096:186..458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score67.0
Seed ortholog evalue5.2e-09
Seed eggNOG ortholog7425.NV19274-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930596.0115824-CDS-H-paniculata_contig56096:185..4581622930596.0115824-CDS-H-paniculata_contig56096:185..458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56096 186..458 -
1691481364.646368-CDS-H-paniculata_contig56096:185..4581691481364.646368-CDS-H-paniculata_contig56096:185..458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56096 186..458 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56096.13129.1prot_H-paniculata_contig56096.13129.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56096 186..458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56096.13129.1

>prot_H-paniculata_contig56096.13129.1 ID=prot_H-paniculata_contig56096.13129.1|Name=mRNA_H-paniculata_contig56096.13129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
PRNIDDVRRSKYCPFWEEAIQREMGGHAKTGTFSVISDSEGKKPLRGHFI
FLYKTNEMGDVVKFKSRLVADGRTQTQDVDYDEGFAPTPSA
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mRNA from alignment at H-paniculata_contig56096:186..458-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56096.13129.1 ID=mRNA_H-paniculata_contig56096.13129.1|Name=mRNA_H-paniculata_contig56096.13129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=273bp|location=Sequence derived from alignment at H-paniculata_contig56096:186..458- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCGAAACATAGATGATGTGCGACGATCAAAATATTGTCCGTTTTGGGA GGAGGCGATTCAAAGGGAAATGGGGGGCCATGCTAAGACGGGAACTTTTA GCGTAATAAGTGACAGTGAAGGAAAGAAACCGTTGAGGGGGCACTTCATT TTTTTGTATAAAACTAACGAGATGGGGGATGTGGTGAAGTTCAAATCAAG ATTGGTAGCTGATGGAAGGACCCAAACCCAAGACGTAGACTACGATGAAG GTTTTGCACCTACCCCTTCCGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig56096:186..458-

>mRNA_H-paniculata_contig56096.13129.1 ID=mRNA_H-paniculata_contig56096.13129.1|Name=mRNA_H-paniculata_contig56096.13129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig56096:186..458- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCGAAACATAGATGATGTGCGACGATCAAAATATTGTCCGTTTTGGGA
GGAGGCGATTCAAAGGGAAATGGGGGGCCATGCTAAGACGGGAACTTTTA
GCGTAATAAGTGACAGTGAAGGAAAGAAACCGTTGAGGGGGCACTTCATT
TTTTTGTATAAAACTAACGAGATGGGGGATGTGGTGAAGTTCAAATCAAG
ATTGGTAGCTGATGGAAGGACCCAAACCCAAGACGTAGACTACGATGAAG
GTTTTGCACCTACCCCTTCCGCCCCTCGAAACATAGATGATGTGCGACGA
TCAAAATATTGTCCGTTTTGGGAGGAGGCGATTCAAAGGGAAATGGGGGG
CCATGCTAAGACGGGAACTTTTAGCGTAATAAGTGACAGTGAAGGAAAGA
AACCGTTGAGGGGGCACTTCATTTTTTTGTATAAAACTAACGAGATGGGG
GATGTGGTGAAGTTCAAATCAAGATTGGTAGCTGATGGAAGGACCCAAAC
CCAAGACGTAGACTACGATGAAGGTTTTGCACCTACCCCTTCCGCC
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