mRNA_H-paniculata_contig55725.13078.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55725.13078.1
Unique NamemRNA_H-paniculata_contig55725.13078.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55725.13078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55725contigH-paniculata_contig55725:204..989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size786
Cds size783
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930587.9884183-UTR-H-paniculata_contig55725:203..2061622930587.9884183-UTR-H-paniculata_contig55725:203..206Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55725 204..206 +
1691481360.8636642-UTR-H-paniculata_contig55725:203..2061691481360.8636642-UTR-H-paniculata_contig55725:203..206Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55725 204..206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930588.006888-CDS-H-paniculata_contig55725:206..9891622930588.006888-CDS-H-paniculata_contig55725:206..989Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55725 207..989 +
1691481360.8747935-CDS-H-paniculata_contig55725:206..9891691481360.8747935-CDS-H-paniculata_contig55725:206..989Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55725 207..989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55725.13078.1prot_H-paniculata_contig55725.13078.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55725 207..989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55725.13078.1

>prot_H-paniculata_contig55725.13078.1 ID=prot_H-paniculata_contig55725.13078.1|Name=mRNA_H-paniculata_contig55725.13078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=261bp
MSITNVEQNRLYEDPTRGKTPCRQQLEVLLSADVSGSGSHDDTHTPAEQP
AQRQVSWQPSPSAPSITTPTDPLSYRGLSSSTELADSGRIAPSLSVPSMA
AMQTFSQDLAAGLRLLTLHIPHLTSNTMSTTSTTNAAPSAVTATGEIPVP
QVAPTAPAIAPFVSAAATTSAVPPVLAITSEEASLRREMAALPADFRRPD
GIPELCWDNFSNTEQRRFVVIFQREAARLREEELRAEASTLALAHQMARE
KMAAVDKALTE
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mRNA from alignment at H-paniculata_contig55725:204..989+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55725.13078.1 ID=mRNA_H-paniculata_contig55725.13078.1|Name=mRNA_H-paniculata_contig55725.13078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=786bp|location=Sequence derived from alignment at H-paniculata_contig55725:204..989+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTATGTCAATCACCAACGTTGAGCAAAATCGCTTGTACGAAGATCCGAC
ACGAGGGAAAACCCCGTGTCGACAGCAGTTGGAAGTTTTGCTTTCTGCAG
ATGTATCAGGTTCAGGTTCGCATGACGACACACACACTCCTGCAGAACAG
CCGGCCCAACGCCAGGTATCGTGGCAACCCTCTCCGAGTGCCCCTTCGAT
CACAACACCAACAGATCCGTTGTCCTATCGAGGCTTATCATCATCCACTG
AATTAGCTGACTCTGGGCGAATTGCGCCTTCCCTATCTGTGCCGTCTATG
GCTGCTATGCAAACCTTTTCTCAAGATTTAGCAGCGGGCCTACGATTATT
GACACTTCATATCCCTCACTTGACGAGCAACACGATGTCCACTACGAGCA
CCACTAATGCTGCCCCTTCTGCAGTCACCGCCACTGGAGAGATACCCGTC
CCGCAAGTAGCCCCCACTGCTCCCGCTATCGCGCCTTTTGTGAGCGCTGC
TGCCACTACGTCGGCCGTCCCTCCCGTTCTTGCCATTACCTCGGAGGAAG
CTTCCCTCCGACGTGAAATGGCTGCTCTGCCGGCAGACTTCCGTAGACCT
GATGGAATACCGGAGTTGTGTTGGGACAATTTCAGTAATACTGAACAGCG
ACGGTTTGTCGTCATATTCCAGCGGGAAGCCGCCCGTCTCAGGGAAGAAG
AACTGCGGGCTGAGGCGTCAACTCTCGCGCTGGCCCATCAAATGGCCCGC
GAGAAGATGGCGGCCGTCGACAAGGCGTTGACGGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig55725:204..989+

>mRNA_H-paniculata_contig55725.13078.1 ID=mRNA_H-paniculata_contig55725.13078.1|Name=mRNA_H-paniculata_contig55725.13078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at H-paniculata_contig55725:204..989+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAATCACCAACGTTGAGCAAAATCGCTTGTACGAAGATCCGACACG
AGGGAAAACCCCGTGTCGACAGCAGTTGGAAGTTTTGCTTTCTGCAGATG
TATCAGGTTCAGGTTCGCATGACGACACACACACTCCTGCAGAACAGCCG
GCCCAACGCCAGGTATCGTGGCAACCCTCTCCGAGTGCCCCTTCGATCAC
AACACCAACAGATCCGTTGTCCTATCGAGGCTTATCATCATCCACTGAAT
TAGCTGACTCTGGGCGAATTGCGCCTTCCCTATCTGTGCCGTCTATGGCT
GCTATGCAAACCTTTTCTCAAGATTTAGCAGCGGGCCTACGATTATTGAC
ACTTCATATCCCTCACTTGACGAGCAACACGATGTCCACTACGAGCACCA
CTAATGCTGCCCCTTCTGCAGTCACCGCCACTGGAGAGATACCCGTCCCG
CAAGTAGCCCCCACTGCTCCCGCTATCGCGCCTTTTGTGAGCGCTGCTGC
CACTACGTCGGCCGTCCCTCCCGTTCTTGCCATTACCTCGGAGGAAGCTT
CCCTCCGACGTGAAATGGCTGCTCTGCCGGCAGACTTCCGTAGACCTGAT
GGAATACCGGAGTTGTGTTGGGACAATTTCAGTAATACTGAACAGCGACG
GTTTGTCGTCATATTCCAGCGGGAAGCCGCCCGTCTCAGGGAAGAAGAAC
TGCGGGCTGAGGCGTCAACTCTCGCGCTGGCCCATCAAATGGCCCGCGAG
AAGATGGCGGCCGTCGACAAGGCGTTGACGGAAATGTCAATCACCAACGT
TGAGCAAAATCGCTTGTACGAAGATCCGACACGAGGGAAAACCCCGTGTC
GACAGCAGTTGGAAGTTTTGCTTTCTGCAGATGTATCAGGTTCAGGTTCG
CATGACGACACACACACTCCTGCAGAACAGCCGGCCCAACGCCAGGTATC
GTGGCAACCCTCTCCGAGTGCCCCTTCGATCACAACACCAACAGATCCGT
TGTCCTATCGAGGCTTATCATCATCCACTGAATTAGCTGACTCTGGGCGA
ATTGCGCCTTCCCTATCTGTGCCGTCTATGGCTGCTATGCAAACCTTTTC
TCAAGATTTAGCAGCGGGCCTACGATTATTGACACTTCATATCCCTCACT
TGACGAGCAACACGATGTCCACTACGAGCACCACTAATGCTGCCCCTTCT
GCAGTCACCGCCACTGGAGAGATACCCGTCCCGCAAGTAGCCCCCACTGC
TCCCGCTATCGCGCCTTTTGTGAGCGCTGCTGCCACTACGTCGGCCGTCC
CTCCCGTTCTTGCCATTACCTCGGAGGAAGCTTCCCTCCGACGTGAAATG
GCTGCTCTGCCGGCAGACTTCCGTAGACCTGATGGAATACCGGAGTTGTG
TTGGGACAATTTCAGTAATACTGAACAGCGACGGTTTGTCGTCATATTCC
AGCGGGAAGCCGCCCGTCTCAGGGAAGAAGAACTGCGGGCTGAGGCGTCA
ACTCTCGCGCTGGCCCATCAAATGGCCCGCGAGAAGATGGCGGCCGTCGA
CAAGGCGTTGACGGAA
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