mRNA_H-paniculata_contig55649.13068.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55649.13068.1
Unique NamemRNA_H-paniculata_contig55649.13068.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig55649.13068.1 vs. uniprot
Match: A0A3G5FPU5_9PHAE (Ribosomal protein S3 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPU5_9PHAE)

HSP 1 Score: 444 bits (1141), Expect = 6.950e-156
Identity = 222/273 (81.32%), Postives = 248/273 (90.84%), Query Frame = 1
Query:    1 MAQKAHPNILRIKESLYMGSTYWDEPRLHYITSTIQKLIESCCLETTHYLDKIKVNRDSDLILIEVNLIHLHFKSKRRFISRRYEENKIKIKKQSWTVLASRLHKAIELIQRFTGAKKITLKINRLKAYTRTVPKPVRKQLAYFTKGFNKTKYDYARYGMQLMYLLIKKKASAASLSRFLKQNICSRQRRKRHYQFLGFIKQTLKSLEQYKTIQGLKIQIKGRFTHKAKGRSRSWNHQIGSVPLSQLDKNIQAEYTQAQTAYGSVGLKVWLCL 819
            MAQKAHPNILR+KES Y GSTYW+E R +YI STI KLIE CCLETTHYLDKI++NR   +I IE++LIHLHF+SKRRF+SRRY+ENK+KIKKQSWT+LA RL++AI LIQRFTGAKK+TLKINRLK YTR+VPK  RK+LAYF K FN+TKYDYARYGMQL++L++KKKAS ASLSRFLKQNI SRQRRKRHYQFL +IKQTLK+LE YK IQGLKIQIKGRFTHKAKGRSRSW HQIGS+PLSQLDKNIQAEYTQ QTAYGSVGLKVWLCL
Sbjct:    1 MAQKAHPNILRLKESPYKGSTYWNEARFYYIISTIHKLIEHCCLETTHYLDKIQINRHLGIIFIEIDLIHLHFRSKRRFVSRRYKENKVKIKKQSWTILACRLYRAIPLIQRFTGAKKVTLKINRLKTYTRSVPKGARKRLAYFGKSFNRTKYDYARYGMQLIFLVLKKKASPASLSRFLKQNIRSRQRRKRHYQFLSYIKQTLKALEPYKEIQGLKIQIKGRFTHKAKGRSRSWMHQIGSMPLSQLDKNIQAEYTQTQTAYGSVGLKVWLCL 273          
BLAST of mRNA_H-paniculata_contig55649.13068.1 vs. uniprot
Match: A0A0U1V7S3_9PHAE (Ribosomal protein S3 n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1V7S3_9PHAE)

HSP 1 Score: 419 bits (1077), Expect = 3.870e-146
Identity = 205/272 (75.37%), Postives = 242/272 (88.97%), Query Frame = 1
Query:    1 MAQKAHPNILRIKESLYMGSTYWDEPRLHYITSTIQKLIESCCLETTHYLDKIKVNRDSDLILIEVNLIHLHFKSKRRFISRRYEENKIKIKKQSWTVLASRLHKAIELIQRFTGAKKITLKINRLKAYTRTVPKPVRKQLAYFTKGFNKTKYDYARYGMQLMYLLIKKKASAASLSRFLKQNICSRQRRKRHYQFLGFIKQTLKSLEQYKTIQGLKIQIKGRFTHKAKGRSRSWNHQIGSVPLSQLDKNIQAEYTQAQTAYGSVGLKVWLC 816
            MAQKAHP ILR   SLY GSTYWDEP+ +YITSTI KLIESCCL T +YL+KI +NR   LI+IE++LIHLHF+SK RF+SRRY+ENK+KIKKQSWTV+ASRL+ A++LIQ+ +G KK+TLKINRLKAYTR++PKP R+QL YF KGFN+TKYD+ARYGMQL+YL++K KASA + SRFL QNICSRQ+RKRHYQFL FIKQ LK+LE YK I+GLKIQIKGRFTHKAKGRSRSW HQIGS+PLSQL+K+IQA+YTQ QTAYGSVG+KVW+C
Sbjct:    1 MAQKAHPTILRPTYSLYTGSTYWDEPKFYYITSTIHKLIESCCLGTNNYLNKIHINRHLGLIIIEIDLIHLHFRSKGRFVSRRYKENKLKIKKQSWTVVASRLYIALKLIQKLSGTKKVTLKINRLKAYTRSIPKPARRQLIYFNKGFNRTKYDFARYGMQLIYLILKGKASALTFSRFLTQNICSRQKRKRHYQFLAFIKQALKALEPYKKIKGLKIQIKGRFTHKAKGRSRSWKHQIGSMPLSQLNKSIQAQYTQTQTAYGSVGIKVWIC 272          
BLAST of mRNA_H-paniculata_contig55649.13068.1 vs. uniprot
Match: A0A089MX77_PETFA (Ribosomal protein S3 n=1 Tax=Petalonia fascia TaxID=2893 RepID=A0A089MX77_PETFA)

HSP 1 Score: 416 bits (1068), Expect = 9.090e-145
Identity = 204/272 (75.00%), Postives = 236/272 (86.76%), Query Frame = 1
Query:    1 MAQKAHPNILRIKESLYMGSTYWDEPRLHYITSTIQKLIESCCLETTHYLDKIKVNRDSDLILIEVNLIHLHFKSKRRFISRRYEENKIKIKKQSWTVLASRLHKAIELIQRFTGAKKITLKINRLKAYTRTVPKPVRKQLAYFTKGFNKTKYDYARYGMQLMYLLIKKKASAASLSRFLKQNICSRQRRKRHYQFLGFIKQTLKSLEQYKTIQGLKIQIKGRFTHKAKGRSRSWNHQIGSVPLSQLDKNIQAEYTQAQTAYGSVGLKVWLC 816
            MAQKAHP ILR    LY GSTYWDEP+ +YITSTI KLIESCC+ TTHYLD IK+ R    ++IE++L+HLHF+SK RF+SRRY+ENK  IKKQSWTVLA RLH AI+LIQ+ +GAKKI+LKINRLK+YTR++PKP R+QL YF KGFN+T+YDYARYGMQL+YLLI +KA+A+SLSRFL QNICSRQRRKRHYQFL FIKQ  ++LE Y+ I GLKIQIKGRFTHKAKGRSRSW HQIGS+PLSQLDK IQA YTQ QTAYGSVG+KVW+C
Sbjct:    1 MAQKAHPTILRPTHDLYKGSTYWDEPKFYYITSTINKLIESCCIGTTHYLDNIKITRHLGFVIIEIDLLHLHFRSKGRFVSRRYKENKKTIKKQSWTVLACRLHTAIKLIQKLSGAKKISLKINRLKSYTRSIPKPARRQLMYFNKGFNRTRYDYARYGMQLIYLLITEKANASSLSRFLTQNICSRQRRKRHYQFLAFIKQVFQALEPYRKIIGLKIQIKGRFTHKAKGRSRSWKHQIGSMPLSQLDKKIQAIYTQTQTAYGSVGIKVWIC 272          
BLAST of mRNA_H-paniculata_contig55649.13068.1 vs. uniprot
Match: E6ZER7_ECTSI (Ribosomal protein S3 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZER7_ECTSI)

HSP 1 Score: 410 bits (1054), Expect = 1.230e-142
Identity = 201/272 (73.90%), Postives = 232/272 (85.29%), Query Frame = 1
Query:    1 MAQKAHPNILRIKESLYMGSTYWDEPRLHYITSTIQKLIESCCLETTHYLDKIKVNRDSDLILIEVNLIHLHFKSKRRFISRRYEENKIKIKKQSWTVLASRLHKAIELIQRFTGAKKITLKINRLKAYTRTVPKPVRKQLAYFTKGFNKTKYDYARYGMQLMYLLIKKKASAASLSRFLKQNICSRQRRKRHYQFLGFIKQTLKSLEQYKTIQGLKIQIKGRFTHKAKGRSRSWNHQIGSVPLSQLDKNIQAEYTQAQTAYGSVGLKVWLC 816
            MAQKAHP ILR   + Y G T+W+E + +YI STI KLIESCC ET HYL+KI++NR    I+IE++LIHLHF+SKRRF+SRRY+ENK   KKQSWT++A RL+ A +LIQRF G KK+ LKINRLKAYTR++PKP RKQLAYF+KGFN+ KYDYARYGMQLMYLL+K KA+A S   FLKQNICSRQRRKRHYQFLG+IKQ LK+LE YK IQG KIQIKGRFTHKAKGRSRSW HQIGS+PLSQLDKNIQA+Y Q QTAYGSVGLK+W+C
Sbjct:    1 MAQKAHPIILRTTNNPYQGPTHWNEAKSYYIISTIHKLIESCCSETNHYLNKIQINRHLGFIIIEIDLIHLHFRSKRRFVSRRYKENKKNKKKQSWTIVACRLYTATKLIQRFVGTKKVALKINRLKAYTRSIPKPARKQLAYFSKGFNRAKYDYARYGMQLMYLLLKNKANATSFLNFLKQNICSRQRRKRHYQFLGYIKQALKALEPYKEIQGFKIQIKGRFTHKAKGRSRSWKHQIGSMPLSQLDKNIQAQYAQTQTAYGSVGLKIWIC 272          
BLAST of mRNA_H-paniculata_contig55649.13068.1 vs. uniprot
Match: W5RGE7_COSCS (Ribosomal protein S3 n=50 Tax=Phaeophyceae TaxID=2870 RepID=W5RGE7_COSCS)

HSP 1 Score: 410 bits (1053), Expect = 2.580e-142
Identity = 201/272 (73.90%), Postives = 236/272 (86.76%), Query Frame = 1
Query:    1 MAQKAHPNILRIKESLYMGSTYWDEPRLHYITSTIQKLIESCCLETTHYLDKIKVNRDSDLILIEVNLIHLHFKSKRRFISRRYEENKIKIKKQSWTVLASRLHKAIELIQRFTGAKKITLKINRLKAYTRTVPKPVRKQLAYFTKGFNKTKYDYARYGMQLMYLLIKKKASAASLSRFLKQNICSRQRRKRHYQFLGFIKQTLKSLEQYKTIQGLKIQIKGRFTHKAKGRSRSWNHQIGSVPLSQLDKNIQAEYTQAQTAYGSVGLKVWLC 816
            MAQKAHP ILR   +LY G T+WDEPR ++I STI+KL+ESCCL TTHYLDKI+VNR   LILIE NLIHLHF+SKRR  SRRY+EN++K KKQSWTV+A RL  A++LIQ+FTG KK+TL+INRLK YTR+VPKP R+Q+AYFTK FN  +YDYARYGMQLMYLLIKKKASAASL+RFL QNICSRQRRKRHYQFL +IKQ  ++L+QYK IQGLKIQIKGRFTHKAKGRSR W +Q+G +P+SQL+K+IQA+Y Q QT YGSVGLK+W+C
Sbjct:    1 MAQKAHPTILRPGNNLYQGCTHWDEPRFYFILSTIKKLMESCCLGTTHYLDKIQVNRHLGLILIEANLIHLHFRSKRRLKSRRYKENQVKSKKQSWTVVACRLQSALKLIQKFTGTKKVTLRINRLKTYTRSVPKPARRQMAYFTKSFNHIRYDYARYGMQLMYLLIKKKASAASLTRFLTQNICSRQRRKRHYQFLAYIKQGFQALQQYKEIQGLKIQIKGRFTHKAKGRSRVWKYQMGQMPISQLNKSIQADYAQTQTGYGSVGLKIWIC 272          
BLAST of mRNA_H-paniculata_contig55649.13068.1 vs. uniprot
Match: A0A8F0FD58_9PHAE (Ribosomal protein S3 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0FD58_9PHAE)

HSP 1 Score: 408 bits (1048), Expect = 1.010e-141
Identity = 196/272 (72.06%), Postives = 235/272 (86.40%), Query Frame = 1
Query:    1 MAQKAHPNILRIKESLYMGSTYWDEPRLHYITSTIQKLIESCCLETTHYLDKIKVNRDSDLILIEVNLIHLHFKSKRRFISRRYEENKIKIKKQSWTVLASRLHKAIELIQRFTGAKKITLKINRLKAYTRTVPKPVRKQLAYFTKGFNKTKYDYARYGMQLMYLLIKKKASAASLSRFLKQNICSRQRRKRHYQFLGFIKQTLKSLEQYKTIQGLKIQIKGRFTHKAKGRSRSWNHQIGSVPLSQLDKNIQAEYTQAQTAYGSVGLKVWLC 816
            MAQKAHP ILR    +Y G T+WDE R +YI STI KL+ESCCL TTHYLDKI++NR   L+LIE +LIHLHF+SKRR  SRRY+ENK+KIKKQSWT++A RLH A++LIQ+FTG KK+TLKINRLKAYTR+VPKP R+Q+AYF K FN  +YDYARYGMQLMYLL++ KASA SLSRFLKQNICSRQRRKRHYQFLG++KQ  ++L++Y++IQGLKIQIKGRFTHKAKGRSR W +Q+G +P+SQL+K IQA+Y Q QT YGSVG+KVW+C
Sbjct:    1 MAQKAHPTILRPTGGIYQGCTHWDEARFYYIVSTIHKLLESCCLGTTHYLDKIQINRHLGLVLIEADLIHLHFRSKRRLRSRRYKENKLKIKKQSWTLVACRLHSAVQLIQKFTGTKKVTLKINRLKAYTRSVPKPARRQMAYFAKSFNHIRYDYARYGMQLMYLLVRNKASALSLSRFLKQNICSRQRRKRHYQFLGYLKQGFQALQEYRSIQGLKIQIKGRFTHKAKGRSRVWKYQMGQMPISQLNKTIQAKYEQTQTGYGSVGIKVWIC 272          
BLAST of mRNA_H-paniculata_contig55649.13068.1 vs. uniprot
Match: A0A1I9LW83_9PHAE (Ribosomal protein S3 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW83_9PHAE)

HSP 1 Score: 403 bits (1036), Expect = 6.760e-140
Identity = 200/272 (73.53%), Postives = 233/272 (85.66%), Query Frame = 1
Query:    1 MAQKAHPNILRIKESLYMGSTYWDEPRLHYITSTIQKLIESCCLETTHYLDKIKVNRDSDLILIEVNLIHLHFKSKRRFISRRYEENKIKIKKQSWTVLASRLHKAIELIQRFTGAKKITLKINRLKAYTRTVPKPVRKQLAYFTKGFNKTKYDYARYGMQLMYLLIKKKASAASLSRFLKQNICSRQRRKRHYQFLGFIKQTLKSLEQYKTIQGLKIQIKGRFTHKAKGRSRSWNHQIGSVPLSQLDKNIQAEYTQAQTAYGSVGLKVWLC 816
            MAQKAHP ILR   +LY GSTYWDE R ++I STI KLIESCCL+TTH+L+KI+VNR   LILIE++LIHLHF+SKRR ISRRY+ENK  IKK+SWT++A RL+ A +LIQRFT  KK+ LKINRLK YTR+VPK  RKQL YF K FN+ +YDYARYGMQL+YL+IKKKAS ASL RFLKQN+CSRQ+RKRHYQFL +IKQT K+LE YK +QGLKIQIKGRFTHKAKGRSR W +Q+GS+PLSQ+DK I+AEY Q QTAYGSVGLKVW+C
Sbjct:    1 MAQKAHPTILRPTNNLYQGSTYWDEARSYFIISTIHKLIESCCLKTTHFLNKIQVNRQLGLILIEIDLIHLHFRSKRRLISRRYKENKKTIKKESWTIVACRLNHAAQLIQRFTKTKKVILKINRLKTYTRSVPKSARKQLVYFNKSFNQARYDYARYGMQLIYLIIKKKASPASLVRFLKQNMCSRQKRKRHYQFLNYIKQTFKALEPYKELQGLKIQIKGRFTHKAKGRSRIWKYQMGSMPLSQIDKKIEAEYAQTQTAYGSVGLKVWIC 272          
BLAST of mRNA_H-paniculata_contig55649.13068.1 vs. uniprot
Match: A0A0U1V7B9_SCYLO (Ribosomal protein S3 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1V7B9_SCYLO)

HSP 1 Score: 400 bits (1029), Expect = 7.860e-139
Identity = 195/272 (71.69%), Postives = 232/272 (85.29%), Query Frame = 1
Query:    1 MAQKAHPNILRIKESLYMGSTYWDEPRLHYITSTIQKLIESCCLETTHYLDKIKVNRDSDLILIEVNLIHLHFKSKRRFISRRYEENKIKIKKQSWTVLASRLHKAIELIQRFTGAKKITLKINRLKAYTRTVPKPVRKQLAYFTKGFNKTKYDYARYGMQLMYLLIKKKASAASLSRFLKQNICSRQRRKRHYQFLGFIKQTLKSLEQYKTIQGLKIQIKGRFTHKAKGRSRSWNHQIGSVPLSQLDKNIQAEYTQAQTAYGSVGLKVWLC 816
            MAQKAHP ILR   +L  GSTYWDE + ++ITS I KL+ESCCL TTHYL+ + +NR    ++IE+NLIHLHFKSK  F+SRRY+ENK  +KKQSWTV+A RLH A++LIQ+ +GAKK++LK+NRLK+YTR+VPK  R+QLAYF KGFN+T+YDYAR GMQL+YL++KKKASA+S SRFL QNICSRQRRKRHYQFL FIKQ  K+LE ++ I GLKIQIKGRFTHKAKGRSRSW HQIGS+PLSQLDK IQ EYTQ QTAYGSVG+KVW+C
Sbjct:    1 MAQKAHPTILRPTYNLNKGSTYWDEAKFYHITSIIYKLLESCCLGTTHYLNNVNINRHLGFVIIEINLIHLHFKSKGHFVSRRYKENKRTVKKQSWTVIACRLHAAVKLIQKLSGAKKVSLKVNRLKSYTRSVPKSARRQLAYFNKGFNRTRYDYARPGMQLIYLVLKKKASASSFSRFLTQNICSRQRRKRHYQFLAFIKQVFKALEPFRKITGLKIQIKGRFTHKAKGRSRSWKHQIGSMPLSQLDKKIQTEYTQTQTAYGSVGIKVWVC 272          
BLAST of mRNA_H-paniculata_contig55649.13068.1 vs. uniprot
Match: V9PA61_UNDPI (Ribosomal protein S3 n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=V9PA61_UNDPI)

HSP 1 Score: 401 bits (1030), Expect = 7.890e-139
Identity = 197/272 (72.43%), Postives = 232/272 (85.29%), Query Frame = 1
Query:    1 MAQKAHPNILRIKESLYMGSTYWDEPRLHYITSTIQKLIESCCLETTHYLDKIKVNRDSDLILIEVNLIHLHFKSKRRFISRRYEENKIKIKKQSWTVLASRLHKAIELIQRFTGAKKITLKINRLKAYTRTVPKPVRKQLAYFTKGFNKTKYDYARYGMQLMYLLIKKKASAASLSRFLKQNICSRQRRKRHYQFLGFIKQTLKSLEQYKTIQGLKIQIKGRFTHKAKGRSRSWNHQIGSVPLSQLDKNIQAEYTQAQTAYGSVGLKVWLC 816
            MAQKAHP ILR   +LY G T+WDEP+ ++I S IQKLIESCCLETTHYLDKI++NR   LI IE NLIHLHF+SKRR  SRRY+EN++  KKQSWTV+A RL  AI+LIQ+FTG KK+ L+I+RLK YTR+VPKP R+Q+AYFTK FN TKYDYAR GMQL+YLLIK KASA SL+RFLKQNICSRQRRKRHYQFL +IKQ  ++L++YK IQGLKIQIKGRFTHKAKGRS+ W +Q+G +P+SQL+K IQAEYTQ QT YGSVGLK+W+C
Sbjct:    1 MAQKAHPTILRSNNNLYQGCTHWDEPKFYFILSIIQKLIESCCLETTHYLDKIQINRHLGLIFIETNLIHLHFRSKRRLKSRRYKENQVITKKQSWTVVACRLQSAIKLIQKFTGTKKVILRIHRLKTYTRSVPKPARRQMAYFTKSFNHTKYDYARSGMQLIYLLIKNKASAVSLTRFLKQNICSRQRRKRHYQFLTYIKQGFQALQEYKKIQGLKIQIKGRFTHKAKGRSKVWKYQMGQMPISQLNKPIQAEYTQTQTGYGSVGLKIWIC 272          
BLAST of mRNA_H-paniculata_contig55649.13068.1 vs. uniprot
Match: A0A4D6E526_9PHAE (Ribosomal protein S3 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E526_9PHAE)

HSP 1 Score: 399 bits (1024), Expect = 4.530e-138
Identity = 195/272 (71.69%), Postives = 232/272 (85.29%), Query Frame = 1
Query:    1 MAQKAHPNILRIKESLYMGSTYWDEPRLHYITSTIQKLIESCCLETTHYLDKIKVNRDSDLILIEVNLIHLHFKSKRRFISRRYEENKIKIKKQSWTVLASRLHKAIELIQRFTGAKKITLKINRLKAYTRTVPKPVRKQLAYFTKGFNKTKYDYARYGMQLMYLLIKKKASAASLSRFLKQNICSRQRRKRHYQFLGFIKQTLKSLEQYKTIQGLKIQIKGRFTHKAKGRSRSWNHQIGSVPLSQLDKNIQAEYTQAQTAYGSVGLKVWLC 816
            MAQKAHP ILR + +LY G T+WDEPR ++I +TI+KLIESC L TTHYLDKIK+NR   LI IE+N+IHLHF+SKRR  SRRY+ENKI  KKQSWT++A RL  AIELIQ+FTG KK+TL++NRLK YTR+VPKP R+Q+AYFTK FN  KYDYARYG+QLMYLLIK KA+ +SL+RFL QNICSRQRRKRHYQFL +IKQ  +SL++YK IQGLKIQIKGRFTHKAKGRSR W +Q+G +P+SQL+K I+AEY Q QT YGSVGLK+W+C
Sbjct:    1 MAQKAHPTILRPRNNLYQGCTHWDEPRFYFILTTIKKLIESCFLGTTHYLDKIKINRHLGLIFIEINIIHLHFRSKRRLKSRRYKENKIINKKQSWTIVACRLQTAIELIQKFTGTKKVTLRVNRLKTYTRSVPKPARRQMAYFTKSFNHIKYDYARYGIQLMYLLIKNKANTSSLTRFLIQNICSRQRRKRHYQFLAYIKQGFQSLQEYKKIQGLKIQIKGRFTHKAKGRSRIWKYQMGQMPISQLNKTIKAEYEQTQTGYGSVGLKIWIC 272          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55649.13068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3G5FPU5_9PHAE6.950e-15681.32Ribosomal protein S3 n=1 Tax=Cladosiphon okamuranu... [more]
A0A0U1V7S3_9PHAE3.870e-14675.37Ribosomal protein S3 n=1 Tax=Colpomenia peregrina ... [more]
A0A089MX77_PETFA9.090e-14575.00Ribosomal protein S3 n=1 Tax=Petalonia fascia TaxI... [more]
E6ZER7_ECTSI1.230e-14273.90Ribosomal protein S3 n=2 Tax=Ectocarpus siliculosu... [more]
W5RGE7_COSCS2.580e-14273.90Ribosomal protein S3 n=50 Tax=Phaeophyceae TaxID=2... [more]
A0A8F0FD58_9PHAE1.010e-14172.06Ribosomal protein S3 n=2 Tax=Laminariales TaxID=28... [more]
A0A1I9LW83_9PHAE6.760e-14073.53Ribosomal protein S3 n=1 Tax=Pleurocladia lacustri... [more]
A0A0U1V7B9_SCYLO7.860e-13971.69Ribosomal protein S3 n=1 Tax=Scytosiphon lomentari... [more]
V9PA61_UNDPI7.890e-13972.43Ribosomal protein S3 n=1 Tax=Undaria pinnatifida T... [more]
A0A4D6E526_9PHAE4.530e-13871.69Ribosomal protein S3 n=2 Tax=Laminariaceae TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55649contigH-paniculata_contig55649:154..975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size822
Cds size822
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930586.6791368-CDS-H-paniculata_contig55649:153..9751622930586.6791368-CDS-H-paniculata_contig55649:153..975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55649 154..975 +
1691481360.2662632-CDS-H-paniculata_contig55649:153..9751691481360.2662632-CDS-H-paniculata_contig55649:153..975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55649 154..975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55649.13068.1prot_H-paniculata_contig55649.13068.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55649 154..975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55649.13068.1

>prot_H-paniculata_contig55649.13068.1 ID=prot_H-paniculata_contig55649.13068.1|Name=mRNA_H-paniculata_contig55649.13068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=274bp
MAQKAHPNILRIKESLYMGSTYWDEPRLHYITSTIQKLIESCCLETTHYL
DKIKVNRDSDLILIEVNLIHLHFKSKRRFISRRYEENKIKIKKQSWTVLA
SRLHKAIELIQRFTGAKKITLKINRLKAYTRTVPKPVRKQLAYFTKGFNK
TKYDYARYGMQLMYLLIKKKASAASLSRFLKQNICSRQRRKRHYQFLGFI
KQTLKSLEQYKTIQGLKIQIKGRFTHKAKGRSRSWNHQIGSVPLSQLDKN
IQAEYTQAQTAYGSVGLKVWLCL*
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mRNA from alignment at H-paniculata_contig55649:154..975+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55649.13068.1 ID=mRNA_H-paniculata_contig55649.13068.1|Name=mRNA_H-paniculata_contig55649.13068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=822bp|location=Sequence derived from alignment at H-paniculata_contig55649:154..975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCACAAAAAGCTCATCCAAATATCTTGCGAATCAAAGAAAGCCTTTA CATGGGCTCTACCTACTGGGACGAACCACGACTCCACTACATAACATCAA CTATTCAGAAACTTATCGAATCTTGCTGCTTAGAAACAACCCATTACCTA GATAAGATTAAAGTGAATCGTGATTCGGACTTAATTCTTATAGAGGTTAA CCTTATACATTTACATTTTAAATCCAAGAGACGCTTTATTTCTAGAAGAT ATGAAGAAAATAAGATTAAAATTAAAAAACAATCATGGACTGTACTTGCA TCCAGACTACACAAAGCCATAGAATTAATACAACGATTTACAGGCGCCAA AAAGATTACTTTAAAAATAAATAGATTAAAAGCGTATACACGCACGGTGC CAAAACCAGTTCGAAAACAATTAGCCTATTTTACTAAAGGTTTTAACAAA ACCAAGTATGACTATGCCAGGTATGGTATGCAACTAATGTATTTACTTAT AAAAAAAAAAGCAAGCGCTGCCAGCTTATCTAGATTTTTAAAACAAAATA TATGCTCTAGACAAAGAAGAAAAAGGCATTACCAATTTTTAGGTTTTATT AAACAAACTTTAAAATCCTTAGAACAATATAAAACAATTCAAGGACTTAA AATACAAATAAAAGGACGATTCACCCACAAGGCTAAAGGCCGAAGCCGCT CCTGGAATCATCAGATAGGTTCGGTGCCTTTGAGCCAATTAGATAAAAAT ATACAAGCCGAATATACACAAGCGCAAACAGCTTACGGAAGTGTAGGATT AAAAGTTTGGCTTTGTTTATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig55649:154..975+

>mRNA_H-paniculata_contig55649.13068.1 ID=mRNA_H-paniculata_contig55649.13068.1|Name=mRNA_H-paniculata_contig55649.13068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1644bp|location=Sequence derived from alignment at H-paniculata_contig55649:154..975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCACAAAAAGCTCATCCAAATATCTTGCGAATCAAAGAAAGCCTTTA
CATGGGCTCTACCTACTGGGACGAACCACGACTCCACTACATAACATCAA
CTATTCAGAAACTTATCGAATCTTGCTGCTTAGAAACAACCCATTACCTA
GATAAGATTAAAGTGAATCGTGATTCGGACTTAATTCTTATAGAGGTTAA
CCTTATACATTTACATTTTAAATCCAAGAGACGCTTTATTTCTAGAAGAT
ATGAAGAAAATAAGATTAAAATTAAAAAACAATCATGGACTGTACTTGCA
TCCAGACTACACAAAGCCATAGAATTAATACAACGATTTACAGGCGCCAA
AAAGATTACTTTAAAAATAAATAGATTAAAAGCGTATACACGCACGGTGC
CAAAACCAGTTCGAAAACAATTAGCCTATTTTACTAAAGGTTTTAACAAA
ACCAAGTATGACTATGCCAGGTATGGTATGCAACTAATGTATTTACTTAT
AAAAAAAAAAGCAAGCGCTGCCAGCTTATCTAGATTTTTAAAACAAAATA
TATGCTCTAGACAAAGAAGAAAAAGGCATTACCAATTTTTAGGTTTTATT
AAACAAACTTTAAAATCCTTAGAACAATATAAAACAATTCAAGGACTTAA
AATACAAATAAAAGGACGATTCACCCACAAGGCTAAAGGCCGAAGCCGCT
CCTGGAATCATCAGATAGGTTCGGTGCCTTTGAGCCAATTAGATAAAAAT
ATACAAGCCGAATATACACAAGCGCAAACAGCTTACGGAAGTGTAGGATT
AAAAGTTTGGCTTTGTTTATAGATGGCACAAAAAGCTCATCCAAATATCT
TGCGAATCAAAGAAAGCCTTTACATGGGCTCTACCTACTGGGACGAACCA
CGACTCCACTACATAACATCAACTATTCAGAAACTTATCGAATCTTGCTG
CTTAGAAACAACCCATTACCTAGATAAGATTAAAGTGAATCGTGATTCGG
ACTTAATTCTTATAGAGGTTAACCTTATACATTTACATTTTAAATCCAAG
AGACGCTTTATTTCTAGAAGATATGAAGAAAATAAGATTAAAATTAAAAA
ACAATCATGGACTGTACTTGCATCCAGACTACACAAAGCCATAGAATTAA
TACAACGATTTACAGGCGCCAAAAAGATTACTTTAAAAATAAATAGATTA
AAAGCGTATACACGCACGGTGCCAAAACCAGTTCGAAAACAATTAGCCTA
TTTTACTAAAGGTTTTAACAAAACCAAGTATGACTATGCCAGGTATGGTA
TGCAACTAATGTATTTACTTATAAAAAAAAAAGCAAGCGCTGCCAGCTTA
TCTAGATTTTTAAAACAAAATATATGCTCTAGACAAAGAAGAAAAAGGCA
TTACCAATTTTTAGGTTTTATTAAACAAACTTTAAAATCCTTAGAACAAT
ATAAAACAATTCAAGGACTTAAAATACAAATAAAAGGACGATTCACCCAC
AAGGCTAAAGGCCGAAGCCGCTCCTGGAATCATCAGATAGGTTCGGTGCC
TTTGAGCCAATTAGATAAAAATATACAAGCCGAATATACACAAGCGCAAA
CAGCTTACGGAAGTGTAGGATTAAAAGTTTGGCTTTGTTTATAG
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