mRNA_H-paniculata_contig55505.13050.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55505.13050.1
Unique NamemRNA_H-paniculata_contig55505.13050.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig55505.13050.1 vs. uniprot
Match: A0A6H5KWG9_9PHAE (ALDH protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWG9_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.090e-22
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:   10 MLQSLPFGGVKDSGYGRFAGPEGLRACCLLKSVTVDRFPSIMSTVVPLPLR 162
            ++QSLPFGGVKDSGYGRFAGPEGLRACCLLKSVTVDRFP IM TVVP PL+
Sbjct:  518 LVQSLPFGGVKDSGYGRFAGPEGLRACCLLKSVTVDRFPKIMGTVVPAPLQ 568
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BLAST of mRNA_H-paniculata_contig55505.13050.1 vs. uniprot
Match: A0A0D3BA10_BRAOL (Uncharacterized protein n=2 Tax=Brassica oleracea TaxID=3712 RepID=A0A0D3BA10_BRAOL)

HSP 1 Score: 73.6 bits (179), Expect = 3.520e-16
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   10 MLQSLPFGGVKDSGYGRFAGPEGLRACCLLKSVTVDRFPSIMSTVVPLPLR 162
            M QSLPFGGVKDS +GRFAG EGLRACCL+KSV  DRF  ++ T +P P++
Sbjct:    1 MCQSLPFGGVKDSEFGRFAGIEGLRACCLVKSVVEDRFWPLIKTKIPKPIQ 51
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BLAST of mRNA_H-paniculata_contig55505.13050.1 vs. uniprot
Match: A0A803Q4S6_CANSA (Aldehyde dehydrogenase n=7 Tax=Rosales TaxID=3744 RepID=A0A803Q4S6_CANSA)

HSP 1 Score: 78.6 bits (192), Expect = 1.240e-15
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 SSSMLQSLPFGGVKDSGYGRFAGPEGLRACCLLKSVTVDRFPSIMSTVVPLPLRVRL 171
            S+ M QSLPFGGVKDSG+GRFAG EGLRACCL+K+V  DRF   + T +P P++VR+
Sbjct:  492 STYMCQSLPFGGVKDSGFGRFAGVEGLRACCLVKAVAEDRFWPYIKTKIPKPIQVRI 548
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BLAST of mRNA_H-paniculata_contig55505.13050.1 vs. uniprot
Match: A0A1Z5KC68_FISSO (Aldedh domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KC68_FISSO)

HSP 1 Score: 78.6 bits (192), Expect = 1.250e-15
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 SSSMLQSLPFGGVKDSGYGRFAGPEGLRACCLLKSVTVDRFPSIMSTVVPLPL 159
            S+ ++Q+LPFGGVKDSG+GRFAGPEGL+A CL +S+ VDRFPS++ T +P PL
Sbjct:  525 SNYLVQALPFGGVKDSGFGRFAGPEGLQALCLERSILVDRFPSLVRTSIPPPL 577
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BLAST of mRNA_H-paniculata_contig55505.13050.1 vs. uniprot
Match: A0A3L6TAV1_PANMI (Aldehyde dehydrogenase 22A1 n=4 Tax=Panicoideae TaxID=147369 RepID=A0A3L6TAV1_PANMI)

HSP 1 Score: 78.6 bits (192), Expect = 1.250e-15
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 SSSMLQSLPFGGVKDSGYGRFAGPEGLRACCLLKSVTVDRFPSIMSTVVPLPLR 162
            SS M QSLPFGGVKDSG+GRFAG EGLRACCL+KSV  DRF   + T++P P++
Sbjct:  475 SSYMCQSLPFGGVKDSGFGRFAGVEGLRACCLVKSVVEDRFWPYIKTMIPKPIQ 528
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BLAST of mRNA_H-paniculata_contig55505.13050.1 vs. uniprot
Match: UPI000B8CAFCD (LOW QUALITY PROTEIN: aldehyde dehydrogenase 22A1 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CAFCD)

HSP 1 Score: 78.2 bits (191), Expect = 1.700e-15
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 SSSMLQSLPFGGVKDSGYGRFAGPEGLRACCLLKSVTVDRFPSIMSTVVPLPLR 162
            S+ M QSLPFGGVKDSG+GRFAG EGLRACCL+KSV  DRF   + TV+P P++
Sbjct:  478 STYMCQSLPFGGVKDSGFGRFAGIEGLRACCLVKSVVEDRFWPYIKTVIPKPIQ 531
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BLAST of mRNA_H-paniculata_contig55505.13050.1 vs. uniprot
Match: A0A314KVI2_NICAT (Aldehyde dehydrogenase 22a1 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A314KVI2_NICAT)

HSP 1 Score: 73.6 bits (179), Expect = 1.760e-15
Identity = 33/50 (66.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:   13 LQSLPFGGVKDSGYGRFAGPEGLRACCLLKSVTVDRFPSIMSTVVPLPLR 162
            +QSLPFGGVKDSG+GRFAG EGLRACCL+KSV  DR+  ++ T +P P++
Sbjct:   18 MQSLPFGGVKDSGFGRFAGIEGLRACCLVKSVVEDRWWPLIKTKIPKPIQ 67
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BLAST of mRNA_H-paniculata_contig55505.13050.1 vs. uniprot
Match: AL221_ARATH (Aldehyde dehydrogenase 22A1 n=31 Tax=Brassicaceae TaxID=3700 RepID=AL221_ARATH)

HSP 1 Score: 77.0 bits (188), Expect = 4.340e-15
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 SSSMLQSLPFGGVKDSGYGRFAGPEGLRACCLLKSVTVDRFPSIMSTVVPLPLR 162
            S+ M QSLPFGGVKDSG+GRFAG EGLRACCL+KSV  DRF  ++ T +P P++
Sbjct:  492 SNYMCQSLPFGGVKDSGFGRFAGIEGLRACCLVKSVVEDRFWPLIKTKIPKPIQ 545
[Close]
BLAST of mRNA_H-paniculata_contig55505.13050.1 vs. uniprot
Match: A0A843X3Y6_COLES (Aldedh domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843X3Y6_COLES)

HSP 1 Score: 76.6 bits (187), Expect = 5.920e-15
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 SSSMLQSLPFGGVKDSGYGRFAGPEGLRACCLLKSVTVDRFPSIMSTVVPLPLR 162
            S+ M QSLPFGGVKDSG+GRFAG EGLRACCL+KSV  DR+   + T +P P+R
Sbjct:  463 STYMCQSLPFGGVKDSGFGRFAGVEGLRACCLVKSVVEDRWWPFIKTTIPPPIR 516
[Close]
BLAST of mRNA_H-paniculata_contig55505.13050.1 vs. uniprot
Match: A0A4S8J1S1_MUSBA (Aldedh domain-containing protein n=5 Tax=Zingiberales TaxID=4618 RepID=A0A4S8J1S1_MUSBA)

HSP 1 Score: 76.6 bits (187), Expect = 5.930e-15
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 SSSMLQSLPFGGVKDSGYGRFAGPEGLRACCLLKSVTVDRFPSIMSTVVPLPLR 162
            S+ M QSLPFGGVK SG+GRFAG EGLRACCL+KSV VDR+   + TV+P P++
Sbjct:  490 STYMCQSLPFGGVKHSGFGRFAGVEGLRACCLVKSVVVDRWWPFIKTVIPKPIQ 543
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55505.13050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWG9_9PHAE2.090e-2288.24ALDH protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A0D3BA10_BRAOL3.520e-1666.67Uncharacterized protein n=2 Tax=Brassica oleracea ... [more]
A0A803Q4S6_CANSA1.240e-1564.91Aldehyde dehydrogenase n=7 Tax=Rosales TaxID=3744 ... [more]
A0A1Z5KC68_FISSO1.250e-1566.04Aldedh domain-containing protein n=2 Tax=Fistulife... [more]
A0A3L6TAV1_PANMI1.250e-1568.52Aldehyde dehydrogenase 22A1 n=4 Tax=Panicoideae Ta... [more]
UPI000B8CAFCD1.700e-1568.52LOW QUALITY PROTEIN: aldehyde dehydrogenase 22A1 n... [more]
A0A314KVI2_NICAT1.760e-1566.00Aldehyde dehydrogenase 22a1 n=1 Tax=Nicotiana atte... [more]
AL221_ARATH4.340e-1566.67Aldehyde dehydrogenase 22A1 n=31 Tax=Brassicaceae ... [more]
A0A843X3Y6_COLES5.920e-1566.67Aldedh domain-containing protein n=1 Tax=Colocasia... [more]
A0A4S8J1S1_MUSBA5.930e-1566.67Aldedh domain-containing protein n=5 Tax=Zingibera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55505contigH-paniculata_contig55505:264..434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score78.2
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog3649.evm.model.supercontig_9.66
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004029,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0008150,GO:0008152,GO:0012505,GO:0016491,GO:0016620,GO:0016903,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0055114
EggNOG free text desc.aldehyde dehydrogenase
EggNOG OGs37KDF@33090,3G9K5@35493,3HMHF@3699,COG1012@1,KOG2454@2759
COG Functional cat.C
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Exons1
Model size171
Cds size162
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930584.5949247-CDS-H-paniculata_contig55505:263..4251622930584.5949247-CDS-H-paniculata_contig55505:263..425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55505 264..425 -
1691481359.3176954-CDS-H-paniculata_contig55505:263..4251691481359.3176954-CDS-H-paniculata_contig55505:263..425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55505 264..425 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930584.6195714-UTR-H-paniculata_contig55505:425..4341622930584.6195714-UTR-H-paniculata_contig55505:425..434Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55505 426..434 -
1691481359.3288481-UTR-H-paniculata_contig55505:425..4341691481359.3288481-UTR-H-paniculata_contig55505:425..434Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55505 426..434 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55505.13050.1prot_H-paniculata_contig55505.13050.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55505 264..425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55505.13050.1

>prot_H-paniculata_contig55505.13050.1 ID=prot_H-paniculata_contig55505.13050.1|Name=mRNA_H-paniculata_contig55505.13050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
MLQSLPFGGVKDSGYGRFAGPEGLRACCLLKSVTVDRFPSIMSTVVPLPL
RVRL
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mRNA from alignment at H-paniculata_contig55505:264..434-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55505.13050.1 ID=mRNA_H-paniculata_contig55505.13050.1|Name=mRNA_H-paniculata_contig55505.13050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at H-paniculata_contig55505:264..434- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGTCATCAATGTTACAGTCTCTTCCCTTCGGAGGCGTGAAGGATTCCGG
ATATGGACGATTTGCGGGGCCGGAGGGACTTCGGGCGTGCTGTCTGCTCA
AGTCCGTGACGGTAGATCGGTTCCCGAGCATCATGAGCACTGTGGTGCCA
CTACCCTTGCGGGTAAGATTA
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Coding sequence (CDS) from alignment at H-paniculata_contig55505:264..434-

>mRNA_H-paniculata_contig55505.13050.1 ID=mRNA_H-paniculata_contig55505.13050.1|Name=mRNA_H-paniculata_contig55505.13050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig55505:264..434- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTACAGTCTCTTCCCTTCGGAGGCGTGAAGGATTCCGGATATGGACG
ATTTGCGGGGCCGGAGGGACTTCGGGCGTGCTGTCTGCTCAAGTCCGTGA
CGGTAGATCGGTTCCCGAGCATCATGAGCACTGTGGTGCCACTACCCTTG
CGGGTAAGATTAATGTTACAGTCTCTTCCCTTCGGAGGCGTGAAGGATTC
CGGATATGGACGATTTGCGGGGCCGGAGGGACTTCGGGCGTGCTGTCTGC
TCAAGTCCGTGACGGTAGATCGGTTCCCGAGCATCATGAGCACTGTGGTG
CCACTACCCTTGCGGGTAAGATTA
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