mRNA_H-paniculata_contig555.13048.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig555.13048.1
Unique NamemRNA_H-paniculata_contig555.13048.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig555.13048.1 vs. uniprot
Match: D7G6Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Y9_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.560e-14
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   13 VGGRHYKNEEFDEAADYYSMALEYCPEDEDHKQDRAVCLGNRAACHLQLKEVQ 171
             G  HYKN EF++A DYY+MAL YCPEDE HK+DRAV L NRA  HL+L+E +
Sbjct:  234 AGNEHYKNGEFEDAVDYYTMALHYCPEDEAHKKDRAVFLANRAQGHLRLEEYE 286
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BLAST of mRNA_H-paniculata_contig555.13048.1 vs. uniprot
Match: A0A835YHX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHX5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.110e-8
Identity = 24/52 (46.15%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   16 GGRHYKNEEFDEAADYYSMALEYCPEDEDHKQDRAVCLGNRAACHLQLKEVQ 171
            G  +Y  +++ +AAD Y++ALE+CP+DE  ++++AV   NRAACHL+L++ Q
Sbjct:   15 GNTYYLAKQYLDAADCYTLALEFCPDDEGERENKAVYFSNRAACHLRLEDFQ 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig555.13048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6Y9_ECTSI1.560e-1464.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YHX5_9STRA1.110e-846.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig555contigH-paniculata_contig555:385..567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue5.7e-12
Seed eggNOG ortholog2880.D7G6Y9
Preferred nameTTC1
KEGG koko:K04136,ko:K07562
KEGG Pathwayko03008,ko03013,ko04020,ko04022,ko04080,ko04261,ko04270,ko04970,map03008,map03013,map04020,map04022,map04080,map04261,map04270,map04970
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000209,GO:0001664,GO:0001666,GO:0002931,GO:0003674,GO:0003824,GO:0004842,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005783,GO:0005829,GO:0006457,GO:0006464,GO:0006508,GO:0006511,GO:0006515,GO:0006605,GO:0006626,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006986,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010498,GO:0010604,GO:0010646,GO:0010648,GO:0010817,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016234,GO:0016567,GO:0016740,GO:0017015,GO:0019216,GO:0019218,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019900,GO:0019904,GO:0019941,GO:0023051,GO:0023052,GO:0023057,GO:0030016,GO:0030017,GO:0030018,GO:0030162,GO:0030163,GO:0030433,GO:0030512,GO:0030544,GO:0030579,GO:0030674,GO:0030911,GO:0030968,GO:0031072,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031334,GO:0031371,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031625,GO:0031647,GO:0031674,GO:0031943,GO:0031974,GO:0031981,GO:0032091,GO:0032268,GO:0032270,GO:0032350,GO:0032434,GO:0032436,GO:0032446,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034450,GO:0034605,GO:0034613,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036293,GO:0036294,GO:0036503,GO:0042176,GO:0042221,GO:0042405,GO:0042802,GO:0042803,GO:0042886,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043292,GO:0043393,GO:0043412,GO:0043632,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045184,GO:0045732,GO:0045862,GO:0046332,GO:0046907,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051082,GO:0051087,GO:0051098,GO:0051100,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0051787,GO:0051788,GO:0051865,GO:0051879,GO:0060090,GO:0060255,GO:0061136,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070482,GO:0070534,GO:0070585,GO:0070647,GO:0070727,GO:0070887,GO:0071218,GO:0071310,GO:0071453,GO:0071456,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072655,GO:0080090,GO:0090034,GO:0090035,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0099080,GO:0099081,GO:0099512,GO:0101031,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1902494,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903844,GO:1903845,GO:1990234,GO:2000058,GO:2000060
EggNOG free text desc.protein binding, bridging
EggNOG OGsKOG4234@1,KOG4234@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-01_011720.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko04030
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930583.768171-CDS-H-paniculata_contig555:384..5671622930583.768171-CDS-H-paniculata_contig555:384..567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig555 385..567 -
1691481358.9329405-CDS-H-paniculata_contig555:384..5671691481358.9329405-CDS-H-paniculata_contig555:384..567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig555 385..567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig555.13048.1prot_H-paniculata_contig555.13048.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig555 385..567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig555.13048.1

>prot_H-paniculata_contig555.13048.1 ID=prot_H-paniculata_contig555.13048.1|Name=mRNA_H-paniculata_contig555.13048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
TCFSVGGRHYKNEEFDEAADYYSMALEYCPEDEDHKQDRAVCLGNRAACH
LQLKEVQYTYR
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mRNA from alignment at H-paniculata_contig555:385..567-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig555.13048.1 ID=mRNA_H-paniculata_contig555.13048.1|Name=mRNA_H-paniculata_contig555.13048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig555:385..567- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATGTTTTTCTGTTGGTGGCAGGCACTACAAAAATGAGGAATTTGACGA
AGCAGCTGATTATTACTCCATGGCGTTGGAGTACTGTCCAGAAGATGAAG
ATCACAAGCAGGATCGGGCGGTGTGCCTTGGAAACCGCGCTGCTTGTCAT
CTTCAACTCAAGGAGGTGCAGTACACTTATCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig555:385..567-

>mRNA_H-paniculata_contig555.13048.1 ID=mRNA_H-paniculata_contig555.13048.1|Name=mRNA_H-paniculata_contig555.13048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig555:385..567- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATGTTTTTCTGTTGGTGGCAGGCACTACAAAAATGAGGAATTTGACGA
AGCAGCTGATTATTACTCCATGGCGTTGGAGTACTGTCCAGAAGATGAAG
ATCACAAGCAGGATCGGGCGGTGTGCCTTGGAAACCGCGCTGCTTGTCAT
CTTCAACTCAAGGAGGTGCAGTACACTTATCGCACATGTTTTTCTGTTGG
TGGCAGGCACTACAAAAATGAGGAATTTGACGAAGCAGCTGATTATTACT
CCATGGCGTTGGAGTACTGTCCAGAAGATGAAGATCACAAGCAGGATCGG
GCGGTGTGCCTTGGAAACCGCGCTGCTTGTCATCTTCAACTCAAGGAGGT
GCAGTACACTTATCGC
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