mRNA_H-paniculata_contig55496.13047.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55496.13047.1
Unique NamemRNA_H-paniculata_contig55496.13047.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig55496.13047.1 vs. uniprot
Match: A0A6A4ZGC5_9STRA (DDE-1 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZGC5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.480e-7
Identity = 37/91 (40.66%), Postives = 45/91 (49.45%), Query Frame = 1 
Query:   13 EVWIADSGATVHTTPSRDNMFNY--CKTDGTTYLTVASGVQLPIEGYGKLTIVFKTPE---------CKYQLLLGKVAHVPELDCNLFSLR 252
            E WI DSGA+   TP+RD   NY  C       LTV +G QLP+ GYG L++               C  +L  G   H PEL  NLFS+R
Sbjct:  565 EHWIVDSGASASCTPNRDYFSNYVPCALS----LTVGNGAQLPVLGYGPLSLAVDMSSRDQADDIRPCALRLTFG--LHCPELQFNLFSVR 649
[Close]
BLAST of mRNA_H-paniculata_contig55496.13047.1 vs. uniprot
Match: A0A6H5KDA4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDA4_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 5.010e-7
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:   10 EEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTVASGVQ-LPIEGYGKLTIVFKTPECKYQLLLGKVAHVPELDCNLFSL 249
            +E ++AD+GAT H  PS +   NY + D    L+VA+G Q   I GYG + +   +      LLL +VAHVPEL+ NL SL
Sbjct:   53 QERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSL 131
[Close]
BLAST of mRNA_H-paniculata_contig55496.13047.1 vs. uniprot
Match: A0A0A9YZ05_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YZ05_LYGHE)

HSP 1 Score: 54.7 bits (130), Expect = 9.510e-7
Identity = 28/78 (35.90%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:   13 EVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTVASGVQLPIEGYGKLTIVFKTPECKYQLLLGKVAHVPELDCNLFS 246
            +VWI DSG+++H T  R+   +  K+  T Y+ + S  +LP+ G G + I     +  Y  ++  V +VPEL  NLFS
Sbjct:  278 DVWILDSGSSLHMTGHREYFSSIDKSFETKYVVLGSNTRLPVHGTGTVMIKKMINDVWYDSIIKDVLYVPELKRNLFS 355
[Close]
BLAST of mRNA_H-paniculata_contig55496.13047.1 vs. uniprot
Match: A0A0A9YT45_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YT45_LYGHE)

HSP 1 Score: 54.7 bits (130), Expect = 9.720e-7
Identity = 28/78 (35.90%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:   13 EVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTVASGVQLPIEGYGKLTIVFKTPECKYQLLLGKVAHVPELDCNLFS 246
            +VWI DSG+++H T  R+   +  K+  T Y+ + S  +LP+ G G + I     +  Y  ++  V +VPEL  NLFS
Sbjct:  278 DVWILDSGSSLHMTGHREYFSSIDKSFETKYVVLGSNTRLPVHGTGTVMIKKMINDVWYDSIIKDVLYVPELKRNLFS 355
[Close]
BLAST of mRNA_H-paniculata_contig55496.13047.1 vs. uniprot
Match: A0A6H5KPC5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC5_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.780e-6
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:   10 EEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTVASGVQ-LPIEGYGKLTIVFKTPECKYQLLLGKVAHVPELDCNLFSL 249
            +E ++AD+GAT H  PS +   NY + D    L+VA+G Q   I GYG + +   +      LLL +VAHVPEL+ NL SL
Sbjct:  279 QERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSL 357
[Close]
BLAST of mRNA_H-paniculata_contig55496.13047.1 vs. uniprot
Match: A0A6H5KRW7_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW7_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.790e-6
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:   10 EEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTVASGVQ-LPIEGYGKLTIVFKTPECKYQLLLGKVAHVPELDCNLFSL 249
            +E ++AD+GAT H  PS +   NY + D    L+VA+G Q   I GYG + +   +      LLL +VAHVPEL+ NL SL
Sbjct:  506 QERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSL 584
[Close]
BLAST of mRNA_H-paniculata_contig55496.13047.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.840e-6
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:   10 EEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTVASGVQ-LPIEGYGKLTIVFKTPECKYQLLLGKVAHVPELDCNLFSL 249
            +E ++AD+GAT H  PS +   NY + D    L+VA+G Q   I GYG + +   +      LLL +VAHVPEL+ NL SL
Sbjct:  477 QERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSL 555
[Close]
BLAST of mRNA_H-paniculata_contig55496.13047.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.860e-6
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:   10 EEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTVASGVQ-LPIEGYGKLTIVFKTPECKYQLLLGKVAHVPELDCNLFSL 249
            +E ++AD+GAT H  PS +   NY + D    L+VA+G Q   I GYG + +   +      LLL +VAHVPEL+ NL SL
Sbjct:  857 QERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSL 935
[Close]
BLAST of mRNA_H-paniculata_contig55496.13047.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.860e-6
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:   10 EEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTVASGVQ-LPIEGYGKLTIVFKTPECKYQLLLGKVAHVPELDCNLFSL 249
            +E ++AD+GAT H  PS +   NY + D    L+VA+G Q   I GYG + +   +      LLL +VAHVPEL+ NL SL
Sbjct:  955 QERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSL 1033
[Close]
BLAST of mRNA_H-paniculata_contig55496.13047.1 vs. uniprot
Match: A0A6H5KFZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFZ8_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 6.200e-6
Identity = 35/81 (43.21%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:   10 EEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTVASGVQ-LPIEGYGKLTIVFKTPECKYQLLLGKVAHVPELDCNLFSL 249
            +E ++AD+GAT H  PS +   NY + D    L+VA+G Q   I GYG + +   +      LLL +VAHVPEL  NL SL
Sbjct:  320 QERFVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELIYNLVSL 398
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55496.13047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6A4ZGC5_9STRA1.480e-740.66DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5KDA4_9PHAE5.010e-743.21Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A0A9YZ05_LYGHE9.510e-735.90Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A9YT45_LYGHE9.720e-735.90Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KPC5_9PHAE1.780e-643.21Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KRW7_9PHAE1.790e-643.21CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5K4H5_9PHAE1.840e-643.21CCHC-type domain-containing protein n=11 Tax=Ectoc... [more]
A0A6H5L715_9PHAE1.860e-643.21CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JNN1_9PHAE1.860e-643.21CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KFZ8_9PHAE6.200e-643.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55496contigH-paniculata_contig55496:829..1080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue3.4e-07
Seed eggNOG ortholog67593.Physo139221
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930583.719085-CDS-H-paniculata_contig55496:828..10801622930583.719085-CDS-H-paniculata_contig55496:828..1080Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55496 829..1080 -
1691481358.9207814-CDS-H-paniculata_contig55496:828..10801691481358.9207814-CDS-H-paniculata_contig55496:828..1080Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55496 829..1080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55496.13047.1prot_H-paniculata_contig55496.13047.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55496 829..1080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55496.13047.1

>prot_H-paniculata_contig55496.13047.1 ID=prot_H-paniculata_contig55496.13047.1|Name=mRNA_H-paniculata_contig55496.13047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
HEGEEVWIADSGATVHTTPSRDNMFNYCKTDGTTYLTVASGVQLPIEGYG
KLTIVFKTPECKYQLLLGKVAHVPELDCNLFSLR
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mRNA from alignment at H-paniculata_contig55496:829..1080-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55496.13047.1 ID=mRNA_H-paniculata_contig55496.13047.1|Name=mRNA_H-paniculata_contig55496.13047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at H-paniculata_contig55496:829..1080- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGAAGGGGAAGAGGTCTGGATAGCGGATTCGGGAGCAACAGTTCATAC
AACCCCTTCACGGGATAATATGTTCAACTATTGTAAAACTGACGGAACAA
CTTACTTGACTGTTGCGTCAGGTGTACAGCTACCCATCGAGGGGTATGGA
AAGCTGACGATAGTTTTCAAAACGCCAGAATGCAAATACCAACTGCTTCT
GGGGAAGGTTGCACACGTACCAGAACTAGATTGTAATCTCTTTTCCCTTC
GG
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Coding sequence (CDS) from alignment at H-paniculata_contig55496:829..1080-

>mRNA_H-paniculata_contig55496.13047.1 ID=mRNA_H-paniculata_contig55496.13047.1|Name=mRNA_H-paniculata_contig55496.13047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig55496:829..1080- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGAAGGGGAAGAGGTCTGGATAGCGGATTCGGGAGCAACAGTTCATAC
AACCCCTTCACGGGATAATATGTTCAACTATTGTAAAACTGACGGAACAA
CTTACTTGACTGTTGCGTCAGGTGTACAGCTACCCATCGAGGGGTATGGA
AAGCTGACGATAGTTTTCAAAACGCCAGAATGCAAATACCAACTGCTTCT
GGGGAAGGTTGCACACGTACCAGAACTAGATTGTAATCTCTTTTCCCTTC
GGCACGAAGGGGAAGAGGTCTGGATAGCGGATTCGGGAGCAACAGTTCAT
ACAACCCCTTCACGGGATAATATGTTCAACTATTGTAAAACTGACGGAAC
AACTTACTTGACTGTTGCGTCAGGTGTACAGCTACCCATCGAGGGGTATG
GAAAGCTGACGATAGTTTTCAAAACGCCAGAATGCAAATACCAACTGCTT
CTGGGGAAGGTTGCACACGTACCAGAACTAGATTGTAATCTCTTTTCCCT
TCGG
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