mRNA_H-paniculata_contig55487.13043.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55487.13043.1
Unique NamemRNA_H-paniculata_contig55487.13043.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig55487.13043.1 vs. uniprot
Match: A0A8F0K092_9PHAE (Ribosomal protein L16 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0K092_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 1.490e-83
Identity = 125/135 (92.59%), Postives = 132/135 (97.78%), Query Frame = 1 
Query:    7 MQPKKTKYRKYYKPRQLPKALTQTHKLKPISSLILVALESAYLNGRQIEAARQGIRRKIKRQGRLKIHLFTDIGVSHKSSASRMGKGKGKVNHWVGGLSAGQTIFKLTGIPIKEGISALKCGANKLPLKLQIYKQ 411
            MQPKK+KY+KYYKPRQLPKALTQTHKLKPISSL LVA +SAYLN RQIEAARQGIRRKIKRQGRLKIHLFTDIG+SHKSSASRMGKGKGK+NHWVGGLSAGQT+FKLTGIP+KEGISALKCGANKLPLKLQIYKQ
Sbjct:    1 MQPKKSKYKKYYKPRQLPKALTQTHKLKPISSLTLVASQSAYLNNRQIEAARQGIRRKIKRQGRLKIHLFTDIGISHKSSASRMGKGKGKINHWVGGLSAGQTLFKLTGIPLKEGISALKCGANKLPLKLQIYKQ 135
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BLAST of mRNA_H-paniculata_contig55487.13043.1 vs. uniprot
Match: A0A4Y5T7U0_9PHAE (Ribosomal protein L16 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T7U0_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 5.710e-56
Identity = 90/132 (68.18%), Postives = 112/132 (84.85%), Query Frame = 1 
Query:    7 MQPKKTKYRKYYKPRQLPKALTQTHKLKPISSLILVALESAYLNGRQIEAARQGIRRKIKRQGRLKIHLFTDIGVSHKSSASRMGKGKGKVNHWVGGLSAGQTIFKLTGIPIKEGISALKCGANKLPLKLQI 402
            MQP KTKYRKYYKPRQ+PK   +   LKP S L L++LES Y+NGRQIEAARQ IRRKIKR+GRLKI +F DIG+S KS++SRMGKGKGK++HWVG +SAG+TIF+L G+P+K+GI ALK G+NK P+K++I
Sbjct:    1 MQPLKTKYRKYYKPRQVPKINPKLLTLKPHSHLSLISLESTYVNGRQIEAARQTIRRKIKRRGRLKIMIFPDIGISKKSTSSRMGKGKGKIDHWVGKISAGKTIFQLIGVPVKDGIPALKSGSNKFPIKVKI 132
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BLAST of mRNA_H-paniculata_contig55487.13043.1 vs. uniprot
Match: V9PA30_UNDPI (Ribosomal protein L16 n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=V9PA30_UNDPI)

HSP 1 Score: 178 bits (452), Expect = 2.470e-55
Identity = 88/134 (65.67%), Postives = 110/134 (82.09%), Query Frame = 1 
Query:    7 MQPKKTKYRKYYKPRQLPKALTQTHKLKPISSLILVALESAYLNGRQIEAARQGIRRKIKRQGRLKIHLFTDIGVSHKSSASRMGKGKGKVNHWVGGLSAGQTIFKLTGIPIKEGISALKCGANKLPLKLQIYK 408
            +QPKKTKYRKY+KPR LP   T+THKLK I+   +  LES YLNGRQIEAARQ IRRK+KR+G+L+I +F DI +S K+SA+RMGKGKGKVNHW+  +SAGQT+F L GI +++GI AL  GANKLPLK++IY+
Sbjct:    3 IQPKKTKYRKYFKPRGLPNTSTKTHKLKEITCFAVTTLESGYLNGRQIEAARQSIRRKVKREGKLEILIFPDIAISRKASAARMGKGKGKVNHWITSISAGQTLFLLYGIGVEQGIPALHSGANKLPLKVKIYQ 136
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BLAST of mRNA_H-paniculata_contig55487.13043.1 vs. uniprot
Match: A0A089N0Z2_PETFA (Ribosomal protein L16 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A089N0Z2_PETFA)

HSP 1 Score: 177 bits (448), Expect = 1.010e-54
Identity = 86/134 (64.18%), Postives = 113/134 (84.33%), Query Frame = 1 
Query:    7 MQPKKTKYRKYYKPRQLPKALTQTHKLKPISSLILVALESAYLNGRQIEAARQGIRRKIKRQGRLKIHLFTDIGVSHKSSASRMGKGKGKVNHWVGGLSAGQTIFKLTGIPIKEGISALKCGANKLPLKLQIYK 408
            +QPKKTKYRKY+KPR LPK+ T+T KLK ++   L+A+ES +LNG+QIEAARQ IRRK+KR+G+L+I +F DI +S K+SA+RMGKGKGKV+HWV  LSAG+T+F L G+  ++GI AL+ GANKLP+KL+IYK
Sbjct:    3 IQPKKTKYRKYFKPRGLPKSSTKTQKLKELNYFALIAMESGFLNGKQIEAARQNIRRKVKREGKLEILVFPDIAISRKASAARMGKGKGKVDHWVAALSAGRTVFLLYGVDAEQGIPALRSGANKLPMKLKIYK 136
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BLAST of mRNA_H-paniculata_contig55487.13043.1 vs. uniprot
Match: A0A1I9LW99_9PHAE (Ribosomal protein L16 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW99_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 4.080e-54
Identity = 85/133 (63.91%), Postives = 112/133 (84.21%), Query Frame = 1 
Query:   10 QPKKTKYRKYYKPRQLPKALTQTHKLKPISSLILVALESAYLNGRQIEAARQGIRRKIKRQGRLKIHLFTDIGVSHKSSASRMGKGKGKVNHWVGGLSAGQTIFKLTGIPIKEGISALKCGANKLPLKLQIYK 408
            QPKKTKYRKY+KPRQ+P   T+THKL+ ++   LVA+ES++LNG+QIEAARQ IRRK+ R+G+L+I +F DI +S K++A+RMGKGKGKV+HWV  LSAGQT+F L GI  ++GI AL+ GANKLP+KL+IY+
Sbjct:    4 QPKKTKYRKYFKPRQMPNNSTKTHKLQDLNCFALVAMESSFLNGKQIEAARQNIRRKVNRKGKLEIIIFPDIAISRKATAARMGKGKGKVDHWVASLSAGQTVFLLYGIDAEQGIPALQAGANKLPMKLKIYQ 136
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BLAST of mRNA_H-paniculata_contig55487.13043.1 vs. uniprot
Match: A0A4D6E560_9PHAE (Ribosomal protein L16 n=4 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E560_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 5.800e-54
Identity = 85/134 (63.43%), Postives = 110/134 (82.09%), Query Frame = 1 
Query:    7 MQPKKTKYRKYYKPRQLPKALTQTHKLKPISSLILVALESAYLNGRQIEAARQGIRRKIKRQGRLKIHLFTDIGVSHKSSASRMGKGKGKVNHWVGGLSAGQTIFKLTGIPIKEGISALKCGANKLPLKLQIYK 408
            +QPKKTKYRKY+KPR LP   T+THKL  ++   L+A+ES+YLN RQIEAARQ IRRK+KR+G+L+I +F DI +S K+SA+RMGKGKGKVNHW+  ++AGQT+F L GI  ++GI AL  GANKLPLK++IY+
Sbjct:    3 IQPKKTKYRKYFKPRGLPNTSTKTHKLTELTCFALIAMESSYLNSRQIEAARQNIRRKVKREGKLEILVFPDIAISRKASAARMGKGKGKVNHWIASITAGQTVFLLYGIDAEQGIPALHSGANKLPLKVKIYQ 136
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BLAST of mRNA_H-paniculata_contig55487.13043.1 vs. uniprot
Match: W5RG04_COSCS (Ribosomal protein L16 n=1 Tax=Costaria costata TaxID=2872 RepID=W5RG04_COSCS)

HSP 1 Score: 174 bits (442), Expect = 7.720e-54
Identity = 84/134 (62.69%), Postives = 109/134 (81.34%), Query Frame = 1 
Query:    7 MQPKKTKYRKYYKPRQLPKALTQTHKLKPISSLILVALESAYLNGRQIEAARQGIRRKIKRQGRLKIHLFTDIGVSHKSSASRMGKGKGKVNHWVGGLSAGQTIFKLTGIPIKEGISALKCGANKLPLKLQIYK 408
            MQPKKTKYRKY+KPR LP   T+THKL  ++   ++ LES Y+NGRQIEAARQ IRRK+KR+G+L+I +F DI +S K+SA+RMGKGKGKV+HWV  +SAGQT+F L G+  ++GI AL  GANKLP+K++IY+
Sbjct:    1 MQPKKTKYRKYFKPRGLPNTSTKTHKLSELTCFAVITLESGYVNGRQIEAARQNIRRKVKREGKLQISIFPDIAISRKASAARMGKGKGKVDHWVTSISAGQTLFTLFGVSAEQGIPALHSGANKLPIKVKIYQ 134
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BLAST of mRNA_H-paniculata_contig55487.13043.1 vs. uniprot
Match: D0IPU3_SACAN (Ribosomal protein L16 n=6 Tax=Laminariales TaxID=2886 RepID=D0IPU3_SACAN)

HSP 1 Score: 173 bits (438), Expect = 3.140e-53
Identity = 84/134 (62.69%), Postives = 109/134 (81.34%), Query Frame = 1 
Query:    7 MQPKKTKYRKYYKPRQLPKALTQTHKLKPISSLILVALESAYLNGRQIEAARQGIRRKIKRQGRLKIHLFTDIGVSHKSSASRMGKGKGKVNHWVGGLSAGQTIFKLTGIPIKEGISALKCGANKLPLKLQIYK 408
            MQPKKTKYRKY+KPR LP    +THKL  ++   ++A+ S YLNGRQIE+ARQ IRRK+KR+G+L+I +F DI +SHK+SA+RMGKGKGKV+HW+  +SAGQT+F L GI  ++GI AL  GANKLPLK++IY+
Sbjct:    1 MQPKKTKYRKYFKPRGLPNTSGKTHKLTELTCFAVIAMGSGYLNGRQIESARQNIRRKVKREGKLEILIFPDIAISHKASAARMGKGKGKVDHWIASISAGQTLFLLYGIDAEQGIPALHSGANKLPLKVKIYQ 134
[Close]
BLAST of mRNA_H-paniculata_contig55487.13043.1 vs. uniprot
Match: A0A0U2M402_9PHAE (Ribosomal protein L16 n=18 Tax=Laminariales TaxID=2886 RepID=A0A0U2M402_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 6.330e-53
Identity = 84/134 (62.69%), Postives = 108/134 (80.60%), Query Frame = 1 
Query:    7 MQPKKTKYRKYYKPRQLPKALTQTHKLKPISSLILVALESAYLNGRQIEAARQGIRRKIKRQGRLKIHLFTDIGVSHKSSASRMGKGKGKVNHWVGGLSAGQTIFKLTGIPIKEGISALKCGANKLPLKLQIYK 408
            MQPKKTKYRKY+KPR LP   T+THKL  ++   ++ +ES YLNGRQIEAARQ IRRK+KR+G+L+I +F DI +S K+SA+RMGKGKGKV+HW+  +SAGQ +F L GI  ++GI AL  GANKLPLK++IY+
Sbjct:    1 MQPKKTKYRKYFKPRGLPNTSTKTHKLTELNCFAVILMESGYLNGRQIEAARQNIRRKVKREGKLEILIFPDIAISRKASAARMGKGKGKVDHWIASVSAGQNLFLLYGIDAEQGIPALHSGANKLPLKVKIYQ 134
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BLAST of mRNA_H-paniculata_contig55487.13043.1 vs. uniprot
Match: A0A3G5FPM2_9PHAE (Ribosomal protein L16 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPM2_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 6.740e-53
Identity = 84/133 (63.16%), Postives = 110/133 (82.71%), Query Frame = 1 
Query:   10 QPKKTKYRKYYKPRQLPKALTQTHKLKPISSLILVALESAYLNGRQIEAARQGIRRKIKRQGRLKIHLFTDIGVSHKSSASRMGKGKGKVNHWVGGLSAGQTIFKLTGIPIKEGISALKCGANKLPLKLQIYK 408
            QPKKTKYRKY+KPR+ P  L QTHKL+ ++   L+A+ES +LNGRQIEAARQ IRRK+KR+G+L+I +F DI +S K+SA+RMGKGKGKV+HWV  + AG+TIF L GI  ++G+ AL+ GANKLP+KL+IY+
Sbjct:    4 QPKKTKYRKYFKPRRGPGNLNQTHKLEELNFFALIAMESGFLNGRQIEAARQNIRRKVKREGKLEIKVFPDIAISRKASAARMGKGKGKVDHWVSSIPAGKTIFTLYGIEAEQGVPALQSGANKLPIKLKIYQ 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55487.13043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0K092_9PHAE1.490e-8392.59Ribosomal protein L16 n=1 Tax=Protohalopteris sp. ... [more]
A0A4Y5T7U0_9PHAE5.710e-5668.18Ribosomal protein L16 n=1 Tax=Dictyopteris divaric... [more]
V9PA30_UNDPI2.470e-5565.67Ribosomal protein L16 n=1 Tax=Undaria pinnatifida ... [more]
A0A089N0Z2_PETFA1.010e-5464.18Ribosomal protein L16 n=4 Tax=Scytosiphonaceae Tax... [more]
A0A1I9LW99_9PHAE4.080e-5463.91Ribosomal protein L16 n=1 Tax=Pleurocladia lacustr... [more]
A0A4D6E560_9PHAE5.800e-5463.43Ribosomal protein L16 n=4 Tax=Laminariaceae TaxID=... [more]
W5RG04_COSCS7.720e-5462.69Ribosomal protein L16 n=1 Tax=Costaria costata Tax... [more]
D0IPU3_SACAN3.140e-5362.69Ribosomal protein L16 n=6 Tax=Laminariales TaxID=2... [more]
A0A0U2M402_9PHAE6.330e-5362.69Ribosomal protein L16 n=18 Tax=Laminariales TaxID=... [more]
A0A3G5FPM2_9PHAE6.740e-5363.16Ribosomal protein L16 n=1 Tax=Cladosiphon okamuran... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55487contigH-paniculata_contig55487:41..454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score97.4
Seed ortholog evalue5.3e-18
Seed eggNOG ortholog69395.JQLZ01000013_gene4369
Preferred namerplP
KEGG koko:K02878
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
EggNOG OGs1RA0Z@1224,2KGAF@204458,2U710@28211,COG0197@1,COG0197@2
COG Functional cat.J
Best tax levelCaulobacterales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size414
Cds size408
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930583.162791-CDS-H-paniculata_contig55487:40..4481622930583.162791-CDS-H-paniculata_contig55487:40..448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55487 41..448 -
1691481358.677008-CDS-H-paniculata_contig55487:40..4481691481358.677008-CDS-H-paniculata_contig55487:40..448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55487 41..448 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930583.1820652-UTR-H-paniculata_contig55487:448..4541622930583.1820652-UTR-H-paniculata_contig55487:448..454Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55487 449..454 -
1691481358.689845-UTR-H-paniculata_contig55487:448..4541691481358.689845-UTR-H-paniculata_contig55487:448..454Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55487 449..454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55487.13043.1prot_H-paniculata_contig55487.13043.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55487 41..448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55487.13043.1

>prot_H-paniculata_contig55487.13043.1 ID=prot_H-paniculata_contig55487.13043.1|Name=mRNA_H-paniculata_contig55487.13043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
MQPKKTKYRKYYKPRQLPKALTQTHKLKPISSLILVALESAYLNGRQIEA
ARQGIRRKIKRQGRLKIHLFTDIGVSHKSSASRMGKGKGKVNHWVGGLSA
GQTIFKLTGIPIKEGISALKCGANKLPLKLQIYKQ*
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mRNA from alignment at H-paniculata_contig55487:41..454-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55487.13043.1 ID=mRNA_H-paniculata_contig55487.13043.1|Name=mRNA_H-paniculata_contig55487.13043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=414bp|location=Sequence derived from alignment at H-paniculata_contig55487:41..454- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTAAAAATGCAACCTAAAAAAACAAAATATCGAAAATATTATAAGCCAAG
GCAATTACCAAAAGCATTAACTCAAACTCATAAATTAAAACCAATATCAT
CATTAATACTAGTTGCTTTAGAGTCCGCTTATTTAAATGGACGTCAAATT
GAAGCAGCGCGACAAGGAATAAGGCGAAAAATTAAACGGCAAGGAAGACT
AAAGATACATTTATTTACTGATATTGGTGTAAGCCATAAATCCTCGGCAT
CTAGGATGGGTAAAGGTAAAGGTAAAGTTAATCACTGGGTTGGTGGCTTA
TCTGCAGGTCAAACAATATTTAAACTAACAGGTATACCAATAAAAGAAGG
AATATCTGCTTTAAAATGTGGAGCTAATAAACTTCCCCTTAAGCTTCAAA
TATATAAACAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig55487:41..454-

>mRNA_H-paniculata_contig55487.13043.1 ID=mRNA_H-paniculata_contig55487.13043.1|Name=mRNA_H-paniculata_contig55487.13043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig55487:41..454- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACCTAAAAAAACAAAATATCGAAAATATTATAAGCCAAGGCAATT
ACCAAAAGCATTAACTCAAACTCATAAATTAAAACCAATATCATCATTAA
TACTAGTTGCTTTAGAGTCCGCTTATTTAAATGGACGTCAAATTGAAGCA
GCGCGACAAGGAATAAGGCGAAAAATTAAACGGCAAGGAAGACTAAAGAT
ACATTTATTTACTGATATTGGTGTAAGCCATAAATCCTCGGCATCTAGGA
TGGGTAAAGGTAAAGGTAAAGTTAATCACTGGGTTGGTGGCTTATCTGCA
GGTCAAACAATATTTAAACTAACAGGTATACCAATAAAAGAAGGAATATC
TGCTTTAAAATGTGGAGCTAATAAACTTCCCCTTAAGCTTCAAATATATA
AACAATAAATGCAACCTAAAAAAACAAAATATCGAAAATATTATAAGCCA
AGGCAATTACCAAAAGCATTAACTCAAACTCATAAATTAAAACCAATATC
ATCATTAATACTAGTTGCTTTAGAGTCCGCTTATTTAAATGGACGTCAAA
TTGAAGCAGCGCGACAAGGAATAAGGCGAAAAATTAAACGGCAAGGAAGA
CTAAAGATACATTTATTTACTGATATTGGTGTAAGCCATAAATCCTCGGC
ATCTAGGATGGGTAAAGGTAAAGGTAAAGTTAATCACTGGGTTGGTGGCT
TATCTGCAGGTCAAACAATATTTAAACTAACAGGTATACCAATAAAAGAA
GGAATATCTGCTTTAAAATGTGGAGCTAATAAACTTCCCCTTAAGCTTCA
AATATATAAACAATAA
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